View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5875_high_40 (Length: 239)
Name: NF5875_high_40
Description: NF5875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5875_high_40 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 164; Significance: 9e-88; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 14 - 221
Target Start/End: Complemental strand, 46565367 - 46565160
Alignment:
| Q |
14 |
aatatcatagatgttaaaattgaaaactaaaaatagagatgtagtagaaatggcttacgagtgatggtactatggtaagtacttaatgtttgaattcatg |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
46565367 |
aatatcatagatgttaaaattgaaaactaaaaatagagatgtaatagaaatggcttacgagtgatgctactatggtaagtacttaatgtttgaattcatt |
46565268 |
T |
|
| Q |
114 |
ataaattttaactgaattttgatgagcgactgtgataaattcattgtgatacaaacatgcattaagaatgtctttcaattcttaaaattgatgttgttgc |
213 |
Q |
| |
|
||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46565267 |
ttaactgaattttgaattttgatgagcgactgtgataaattcattgtgatacaaacatgcattaagaatgtctttcaattcttaaaattgatgttgttgc |
46565168 |
T |
|
| Q |
214 |
ggaatata |
221 |
Q |
| |
|
|||||||| |
|
|
| T |
46565167 |
ggaatata |
46565160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University