View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5875_high_48 (Length: 222)
Name: NF5875_high_48
Description: NF5875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5875_high_48 |
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Alignment Details
Target: chr3 (Bit Score: 173; Significance: 3e-93; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 36784918 - 36784699
Alignment:
| Q |
1 |
aaccacggtgatttcacttaataaaagagttaatgtcaaaaa--ggtattgaaaagagaatattcttaatgtttcttaaaatagaaatcaccttagacaa |
98 |
Q |
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| T |
36784918 |
aaccacggtaatttcacttaataaaagagttaatgtcaaaaaagggtattgaaaagagaacattcttgatgtttcttaaaatagaagtcaccttagacaa |
36784819 |
T |
|
| Q |
99 |
agaaagttaaacagaggattttaaacgagtagagtatttgagattgaaaatacttcaaaagaagaaaggttgaagctcctaaagcttctactgagtacat |
198 |
Q |
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|||||||||||| |||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
36784818 |
agaaagttaaacggaggattttaaacgagtagagtatttgaaactgaaaatacttcaaaagaagaaaggttgaagctcctaaagcttctactaagtacat |
36784719 |
T |
|
| Q |
199 |
cagagagagatgaaacgtag |
218 |
Q |
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|||||||||| ||||||||| |
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| T |
36784718 |
cagagagagaagaaacgtag |
36784699 |
T |
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