View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5875_high_49 (Length: 212)

Name: NF5875_high_49
Description: NF5875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5875_high_49
NF5875_high_49
[»] chr2 (3 HSPs)
chr2 (17-196)||(12607418-12607595)
chr2 (108-154)||(5322166-5322212)
chr2 (108-154)||(16519136-16519182)
[»] chr8 (6 HSPs)
chr8 (109-158)||(28517295-28517344)
chr8 (108-154)||(40985121-40985167)
chr8 (108-154)||(26772689-26772735)
chr8 (108-154)||(43733167-43733213)
chr8 (108-153)||(34272504-34272549)
chr8 (114-154)||(9054566-9054606)
[»] chr7 (2 HSPs)
chr7 (108-154)||(30080960-30081006)
chr7 (108-153)||(33406679-33406724)
[»] chr4 (5 HSPs)
chr4 (108-158)||(42777336-42777385)
chr4 (107-154)||(54205827-54205874)
chr4 (108-154)||(27485289-27485335)
chr4 (108-153)||(31530008-31530053)
chr4 (108-153)||(38317276-38317321)
[»] chr1 (2 HSPs)
chr1 (108-154)||(27102871-27102917)
chr1 (108-154)||(50476526-50476572)
[»] chr5 (4 HSPs)
chr5 (108-160)||(13294021-13294072)
chr5 (111-154)||(1978194-1978237)
chr5 (108-154)||(6491172-6491218)
chr5 (108-150)||(27480219-27480261)
[»] scaffold0991 (1 HSPs)
scaffold0991 (108-159)||(3232-3283)
[»] scaffold0036 (1 HSPs)
scaffold0036 (108-154)||(82784-82830)
[»] chr3 (1 HSPs)
chr3 (108-154)||(32858818-32858864)


Alignment Details
Target: chr2 (Bit Score: 153; Significance: 3e-81; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 17 - 196
Target Start/End: Complemental strand, 12607595 - 12607418
Alignment:
Q  17 acttaacattatatattctcccaaatcaaaaggatttaacactgtgtcaaacaatttttggtaaactatctttctacaacacctctattgtatacaattt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| ||||  |||||||||    
T  12607595 acttaacattatatattctcccaaatcaaaaggatttaacactctgtgaaacaatttttggtaaactatctttctacaacacctttatt--atacaattt 12607498  T
Q  117 ttgagtttcctcaaatgatgaggattttgtattatgaaaaaagaagaaccattcaaagtcatcctctccaaatgtcctat 196  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12607497 ttgagttacctcaaatgatgaggattttgtattatgaaaaaagaagaaccattcaaagtcatcctctccaaatgtcctat 12607418  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 154
Target Start/End: Original strand, 5322166 - 5322212
Alignment:
Q  108 atacaatttttgagtttcctcaaatgatgaggattttgtattatgaa 154  Q
    ||||| |||||||||| || ||||||| |||||||||||||||||||    
T  5322166 atacagtttttgagttcccccaaatgaggaggattttgtattatgaa 5322212  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 154
Target Start/End: Original strand, 16519136 - 16519182
Alignment:
Q  108 atacaatttttgagtttcctcaaatgatgaggattttgtattatgaa 154  Q
    |||||| |||| ||||||| ||||||| |||||||||||||||||||    
T  16519136 atacaactttttagtttccccaaatgaggaggattttgtattatgaa 16519182  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 109 - 158
Target Start/End: Original strand, 28517295 - 28517344
Alignment:
Q  109 tacaatttttgagtttcctcaaatgatgaggattttgtattatgaaaaaa 158  Q
    |||||||||||||| ||| ||| |||||||||||||||||||||||||||    
T  28517295 tacaatttttgagtatccccaagtgatgaggattttgtattatgaaaaaa 28517344  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 108 - 154
Target Start/End: Original strand, 40985121 - 40985167
Alignment:
Q  108 atacaatttttgagtttcctcaaatgatgaggattttgtattatgaa 154  Q
    |||||||||||||||| || ||||||| |||||||||||||||||||    
T  40985121 atacaatttttgagttcccccaaatgaggaggattttgtattatgaa 40985167  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 154
Target Start/End: Original strand, 26772689 - 26772735
Alignment:
Q  108 atacaatttttgagtttcctcaaatgatgaggattttgtattatgaa 154  Q
    ||||||||||| |||| | ||||||||||||| ||||||||||||||    
T  26772689 atacaattttttagttccttcaaatgatgagggttttgtattatgaa 26772735  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 154
Target Start/End: Original strand, 43733167 - 43733213
Alignment:
Q  108 atacaatttttgagtttcctcaaatgatgaggattttgtattatgaa 154  Q
    ||||||||||| | || |||||||||| |||||||||||||||||||    
T  43733167 atacaattttttaattccctcaaatgaggaggattttgtattatgaa 43733213  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 108 - 153
Target Start/End: Complemental strand, 34272549 - 34272504
Alignment:
Q  108 atacaatttttgagtttcctcaaatgatgaggattttgtattatga 153  Q
    ||||||||||||||||||| ||||||| | ||||||| ||||||||    
T  34272549 atacaatttttgagtttccccaaatgagggggattttttattatga 34272504  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 154
Target Start/End: Original strand, 9054566 - 9054606
Alignment:
Q  114 tttttgagtttcctcaaatgatgaggattttgtattatgaa 154  Q
    ||||| ||||||||||||||| |||||||||||||| ||||    
T  9054566 ttttttagtttcctcaaatgaggaggattttgtattttgaa 9054606  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000007; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 108 - 154
Target Start/End: Complemental strand, 30081006 - 30080960
Alignment:
Q  108 atacaatttttgagtttcctcaaatgatgaggattttgtattatgaa 154  Q
    |||||||||||  ||||||||||||||||||| ||||||||||||||    
T  30081006 atacaatttttttgtttcctcaaatgatgagggttttgtattatgaa 30080960  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 108 - 153
Target Start/End: Original strand, 33406679 - 33406724
Alignment:
Q  108 atacaatttttgagtttcctcaaatgatgaggattttgtattatga 153  Q
    |||||||||||||||| |||||||||| | ||||||| ||||||||    
T  33406679 atacaatttttgagttccctcaaatgagggggattttttattatga 33406724  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000007; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 108 - 158
Target Start/End: Original strand, 42777336 - 42777385
Alignment:
Q  108 atacaatttttgagtttcctcaaatgatgaggattttgtattatgaaaaaa 158  Q
    |||||||||||||||||| | ||||||||| ||||||||||||||||||||    
T  42777336 atacaatttttgagtttc-taaaatgatgaagattttgtattatgaaaaaa 42777385  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 107 - 154
Target Start/End: Complemental strand, 54205874 - 54205827
Alignment:
Q  107 tatacaatttttgagtttcctcaaatgatgaggattttgtattatgaa 154  Q
    ||||||||||||||||| || ||||||| ||||||||||| |||||||    
T  54205874 tatacaatttttgagttcccccaaatgaggaggattttgttttatgaa 54205827  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 154
Target Start/End: Original strand, 27485289 - 27485335
Alignment:
Q  108 atacaatttttgagtttcctcaaatgatgaggattttgtattatgaa 154  Q
    ||||| |||| ||||| |||||||||| |||||||||||||||||||    
T  27485289 atacatttttcgagttccctcaaatgaggaggattttgtattatgaa 27485335  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 108 - 153
Target Start/End: Complemental strand, 31530053 - 31530008
Alignment:
Q  108 atacaatttttgagtttcctcaaatgatgaggattttgtattatga 153  Q
    |||||||||||||||| || ||||||| ||||||||| ||||||||    
T  31530053 atacaatttttgagttcccccaaatgaggaggattttttattatga 31530008  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 108 - 153
Target Start/End: Original strand, 38317276 - 38317321
Alignment:
Q  108 atacaatttttgagtttcctcaaatgatgaggattttgtattatga 153  Q
    |||||||||||||||| || ||||||| ||||||||| ||||||||    
T  38317276 atacaatttttgagttcccccaaatgaggaggattttttattatga 38317321  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000007; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 108 - 154
Target Start/End: Original strand, 27102871 - 27102917
Alignment:
Q  108 atacaatttttgagtttcctcaaatgatgaggattttgtattatgaa 154  Q
    ||||||||||||||||||| ||||||| ||| |||||||||||||||    
T  27102871 atacaatttttgagtttccccaaatgaagagcattttgtattatgaa 27102917  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 108 - 154
Target Start/End: Complemental strand, 50476572 - 50476526
Alignment:
Q  108 atacaatttttgagtttcctcaaatgatgaggattttgtattatgaa 154  Q
    |||||||||||||||| |||||||||| | |||||||||||||||||    
T  50476572 atacaatttttgagttccctcaaatgagggggattttgtattatgaa 50476526  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 108 - 160
Target Start/End: Original strand, 13294021 - 13294072
Alignment:
Q  108 atacaatttttgagtttcctcaaatgatgaggattttgtattatgaaaaaaga 160  Q
    ||||||||||| |||||| | |||||| |||||||||||||||||||||||||    
T  13294021 atacaatttttaagtttctt-aaatgaggaggattttgtattatgaaaaaaga 13294072  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 111 - 154
Target Start/End: Complemental strand, 1978237 - 1978194
Alignment:
Q  111 caatttttgagtttcctcaaatgatgaggattttgtattatgaa 154  Q
    |||||||||||||||| ||||||| | |||||||||||||||||    
T  1978237 caatttttgagtttccccaaatgagggggattttgtattatgaa 1978194  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 154
Target Start/End: Complemental strand, 6491218 - 6491172
Alignment:
Q  108 atacaatttttgagtttcctcaaatgatgaggattttgtattatgaa 154  Q
    |||||||||||||||| || ||||||| || ||||||||||||||||    
T  6491218 atacaatttttgagttcccccaaatgaggaagattttgtattatgaa 6491172  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 150
Target Start/End: Original strand, 27480219 - 27480261
Alignment:
Q  108 atacaatttttgagtttcctcaaatgatgaggattttgtatta 150  Q
    |||||||||||||||| |||||||||| ||||||||| |||||    
T  27480219 atacaatttttgagttccctcaaatgaggaggattttttatta 27480261  T

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Target: scaffold0991 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0991
Description:

Target: scaffold0991; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 108 - 159
Target Start/End: Complemental strand, 3283 - 3232
Alignment:
Q  108 atacaatttttgagtttcctcaaatgatgaggattttgtattatgaaaaaag 159  Q
    ||||||||||| |  |||| ||||||| ||||||||||||||||||||||||    
T  3283 atacaattttttaagttccccaaatgaggaggattttgtattatgaaaaaag 3232  T

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Target: scaffold0036 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 154
Target Start/End: Complemental strand, 82830 - 82784
Alignment:
Q  108 atacaatttttgagtttcctcaaatgatgaggattttgtattatgaa 154  Q
    |||||||||| ||||| |||||||| | |||||||||||||||||||    
T  82830 atacaattttggagttccctcaaattaggaggattttgtattatgaa 82784  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 154
Target Start/End: Complemental strand, 32858864 - 32858818
Alignment:
Q  108 atacaatttttgagtttcctcaaatgatgaggattttgtattatgaa 154  Q
    |||||||||||||||| || ||||||| ||||||||| |||||||||    
T  32858864 atacaatttttgagttcccccaaatgaggaggattttatattatgaa 32858818  T

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