View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5875_high_50 (Length: 208)
Name: NF5875_high_50
Description: NF5875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5875_high_50 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 4093480 - 4093273
Alignment:
| Q |
1 |
gctgcaacaccatcttaaacctcaatcaaacttatagtggatacgaaaacttgtagaaacaaagcaaagcagaagcgaatgataaactgatttcatctaa |
100 |
Q |
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| T |
4093480 |
gctgcaacaccatcttaaacctcaatcaaacttatagtggatacgaaaacttgtagaaacaaagcaaagcagaagcgaatgataaactgatttcatctaa |
4093381 |
T |
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| Q |
101 |
gaaaaaatgtgacataaacagaatagtatttgtaaaatgcaaaaggggtgcaaatgtgatacaaatgtataactatttccactaagccttgttagatgaa |
200 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4093380 |
gaaaaaatatgacataaacagaatagtatttgtaaaatgcaaaaggggtgcaaatgtgatacaaatgtataactatttccactaagccttgttagatgaa |
4093281 |
T |
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| Q |
201 |
agccaatc |
208 |
Q |
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| T |
4093280 |
aaccaatc |
4093273 |
T |
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