View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5875_high_51 (Length: 204)
Name: NF5875_high_51
Description: NF5875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5875_high_51 |
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| [»] scaffold0041 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 168; Significance: 3e-90; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 40665253 - 40665070
Alignment:
| Q |
1 |
ggcagaatgtgcacacgtttaccatacttgacatcaggacactgatgcacagacacaacatctccaagccgaactcgcaaattcgacctcacaactttgt |
100 |
Q |
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| T |
40665253 |
ggcagaatgtgcacacgtttaccatacttgacatcagtacactgatgcacagacacaacatctccaagccgaactcgcaaattcgacctcacaactttgt |
40665154 |
T |
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| Q |
101 |
tcatcctaatcctaggctcttcacagctatcatcagcaagagcaatacaaacagtatccttccttttctttccctgcaacacaa |
184 |
Q |
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| T |
40665153 |
tcatcctaatcctaggctcttcacaggtatcatcaccaagagcaatacaaacactatccttccttttctttccctgcaacacaa |
40665070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 40725291 - 40725474
Alignment:
| Q |
1 |
ggcagaatgtgcacacgtttaccatacttgacatcaggacactgatgcacagacacaacatctccaagccgaactcgcaaattcgacctcacaactttgt |
100 |
Q |
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| T |
40725291 |
ggcagaatgtgcacacgtttaccatacttgacatcagtacactgatgcacagacacaacatctccaagccgaactcgcaaattcgacctcacaactttgt |
40725390 |
T |
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| Q |
101 |
tcatcctaatcctaggctcttcacagctatcatcagcaagagcaatacaaacagtatccttccttttctttccctgcaacacaa |
184 |
Q |
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| T |
40725391 |
tcatcctaatcctaggctcttcacaggtatcatcaccaagagcaatacaaacactatccttccttttctttccctgcaacacaa |
40725474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 22 - 175
Target Start/End: Complemental strand, 109467 - 109314
Alignment:
| Q |
22 |
ccatacttgacatcaggacactgatgcacagacacaacatctccaagccgaactcgcaaattcgacctcacaactttgttcatcctaatcctaggctctt |
121 |
Q |
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| T |
109467 |
ccatatttgacatcagcacattgatgcaccgaaacaacatctccaagcctaaccctaagattgttcctcacaaccttgttcattcttatttttggctctt |
109368 |
T |
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| Q |
122 |
cacagctatcatcagcaagagcaatacaaacagtatccttccttttctttccct |
175 |
Q |
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| T |
109367 |
cacatgtttcatcagcgagtgcaatacatatagtatctttccttttcttaccct |
109314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 22 - 175
Target Start/End: Original strand, 41093829 - 41093982
Alignment:
| Q |
22 |
ccatacttgacatcaggacactgatgcacagacacaacatctccaagccgaactcgcaaattcgacctcacaactttgttcatcctaatcctaggctctt |
121 |
Q |
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| T |
41093829 |
ccatatttgacatcagcacattgatgcaccgaaacaacatctccaagcctaaccctaagattgttcctcacaaccttgttcattcttatttttggctctt |
41093928 |
T |
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| Q |
122 |
cacagctatcatcagcaagagcaatacaaacagtatccttccttttctttccct |
175 |
Q |
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| T |
41093929 |
cacatgtttcatcagcgagtgcaatacatatagtatctttccttttcttaccct |
41093982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 22 - 175
Target Start/End: Complemental strand, 27976090 - 27975937
Alignment:
| Q |
22 |
ccatacttgacatcaggacactgatgcacagacacaacatctccaagccgaactcgcaaattcgacctcacaactttgttcatcctaatcctaggctctt |
121 |
Q |
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||||| |||||||||||||| ||||| ||||| |||||||| ||||||| ||| | | ||| |||||||| || ||||| || ||| | ||||||| |
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| T |
27976090 |
ccatatttgacatcaggacattgatgaacagaaacaacatcaccaagcctaaccctaagattgtttctcacaaccttattcattcttatctttggctctt |
27975991 |
T |
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| Q |
122 |
cacagctatcatcagcaagagcaatacaaacagtatccttccttttctttccct |
175 |
Q |
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|||| | ||||||||||| |||||||||| |||||||| |||||||| |||| |
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| T |
27975990 |
cacatgtttcatcagcaagtgcaatacaaatcgtatcctttcttttcttaccct |
27975937 |
T |
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