View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5875_high_53 (Length: 202)
Name: NF5875_high_53
Description: NF5875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5875_high_53 |
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Alignment Details
Target: chr4 (Bit Score: 123; Significance: 2e-63; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 17 - 180
Target Start/End: Original strand, 27724854 - 27725017
Alignment:
| Q |
17 |
cacagagaatcaccctcctaatattaggtcatttgcaagtaagaaccaaaaactcgaacctgtgggagagaatctgactccagaagcttttatcacatgt |
116 |
Q |
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| T |
27724854 |
cacagagaatcaccctcctaatattaggtcatttgcaagtaagaaccaaaaactcgaacgtgtgggggagaatctgactccagaagcttttatcacgtgt |
27724953 |
T |
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| Q |
117 |
ccagaccagnnnnnnnttacggctgttgaatttgcaagctttggtgatccttcgggtttctgtg |
180 |
Q |
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| T |
27724954 |
ccggaccagaaaaaaattacggctgttgagtttgcaagctttggtgatccttcgggtttctgtg |
27725017 |
T |
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