View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5875_high_9 (Length: 454)
Name: NF5875_high_9
Description: NF5875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5875_high_9 |
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Alignment Details
Target: chr8 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 12 - 435
Target Start/End: Complemental strand, 16750443 - 16750024
Alignment:
| Q |
12 |
aagaaggatttgataaagttattgttgaacactgacatcgatgtcaaaggaaatgtttcagttatttccatcattggaattggaggacttggaaagaccg |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16750443 |
aagaaggatttgataaagttattgttgaacactgacatcgatgtcaaaggaaatgtttcagttatttccatcattggaattggaggacttggaaagaccg |
16750344 |
T |
|
| Q |
112 |
cagttgctcaacgtgtgtacaatgataaaaccgttcaacagcattttgaattgaaaaagtgggtgtgtgttgctgacgatgattctgaagtgaaaggttt |
211 |
Q |
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|| ||||||||| |||||||| |||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16750343 |
ca-ttgctcaacttgtgtaca-tgataagaccgttcaacaacattttgaattgaaaaagtgggtgtgtgttgctgacgatgattctgaagtgaaaggttt |
16750246 |
T |
|
| Q |
212 |
tgatgtagaaggtattgctgcaaagatcttagaatctaagactcgtgatgagatggatcgcaagtgcaacaagaactccgtacaaaaattgacggaaata |
311 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
16750245 |
tgatgtagaaggtattgctgctaagatcttagaatctaagactcgtgatgagatggatc--aagtgcaacaagaactccgtacaaaaattgacggaaata |
16750148 |
T |
|
| Q |
312 |
gatatttgctcattttagatgacatgtggaatgaggaccgtgaaaattggcttcagttgatgacattgttgatggatggagcaaaaggaagtaaaattgt |
411 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| |
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| T |
16750147 |
gatatttgctcattttagatgacatgtggaatgaggagcgtgaaaattggcttcagttgatgacactgttgagggatggagcaaaaggaagtaaaattgt |
16750048 |
T |
|
| Q |
412 |
cataactacaaggagcgagacggt |
435 |
Q |
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|||||||||||||||||||||||| |
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| T |
16750047 |
cataactacaaggagcgagacggt |
16750024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 63; Significance: 3e-27; HSPs: 12)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 9 - 187
Target Start/End: Original strand, 7481989 - 7482167
Alignment:
| Q |
9 |
gagaagaaggatttgataaagttattgttgaacactgacatcgatgtcaaaggaaatgtttcagttatttccatcattggaattggaggacttggaaaga |
108 |
Q |
| |
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|||||||| || |||||| |||| ||||| ||||| | || | |||| |||| ||||||||| ||||||| || ||||||||||||||||||||||||| |
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| T |
7481989 |
gagaagaaagagttgatagagttgttgtttaacaccggcaacaatgtgaaagagaatgtttcaattatttctataattggaattggaggacttggaaaga |
7482088 |
T |
|
| Q |
109 |
ccgcagttgctcaacgtgtgtacaatgataaaaccgttcaacagcattttgaattgaaaaagtgggtgtgtgttgctga |
187 |
Q |
| |
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| ||| ||||||||| ||| |||||||| ||| || ||||| |||||| | |||||||||||||| |||||| |||| |
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| T |
7482089 |
ctgcacttgctcaacttgtatacaatgacaaagaagtgcaacaacattttcagttgaaaaagtgggtttgtgtttctga |
7482167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 21 - 187
Target Start/End: Complemental strand, 7129137 - 7128971
Alignment:
| Q |
21 |
ttgataaagttattgttgaacactgacatcgatgtcaaaggaaatgtttcagttatttccatcattggaattggaggacttggaaagaccgcagttgctc |
120 |
Q |
| |
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|||||| |||| ||||| ||||| | || | |||| |||| ||||||||| ||||||| || |||||||||||||||||||||||||| ||| |||||| |
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| T |
7129137 |
ttgatagagttgttgtttaacaccggcaacaatgtgaaagagaatgtttcaattatttctataattggaattggaggacttggaaagactgcacttgctc |
7129038 |
T |
|
| Q |
121 |
aacgtgtgtacaatgataaaaccgttcaacagcattttgaattgaaaaagtgggtgtgtgttgctga |
187 |
Q |
| |
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||| ||| |||||||| ||| || ||||| |||||||| |||||||| ||||| |||||| |||| |
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| T |
7129037 |
aacttgtatacaatgacaaagaagtgcaacaacattttgagttgaaaaaatgggtttgtgtttctga |
7128971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 12 - 187
Target Start/End: Original strand, 7528111 - 7528286
Alignment:
| Q |
12 |
aagaaggatttgataaagttattgttgaacactgacatcgatgtcaaaggaaatgtttcagttatttccatcattggaattggaggacttggaaagaccg |
111 |
Q |
| |
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||||| || |||||| |||| ||||| |||||| || | |||| |||| ||||||||||||||||| || |||||||||||||||||||||||||| | |
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| T |
7528111 |
aagaaagagttgatagagttgttgtttaacactagcaacaatgtgaaagagaatgtttcagttatttctataattggaattggaggacttggaaagactg |
7528210 |
T |
|
| Q |
112 |
cagttgctcaacgtgtgtacaatgataaaaccgttcaacagcattttgaattgaaaaagtgggtgtgtgttgctga |
187 |
Q |
| |
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|| |||||||| ||| |||||||| || | || ||| | |||||||| || ||||| ||||| |||||| |||| |
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| T |
7528211 |
cacttgctcaatttgtatacaatgacaagaaagtgcaagaacattttgagtttaaaaaatgggtttgtgtttctga |
7528286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 9 - 187
Target Start/End: Original strand, 7520058 - 7520236
Alignment:
| Q |
9 |
gagaagaaggatttgataaagttattgttgaacactgacatcgatgtcaaaggaaatgtttcagttatttccatcattggaattggaggacttggaaaga |
108 |
Q |
| |
|
|||||||| || |||||| |||| ||||| |||||| || | |||| | || ||||||||||||||||| || ||||||||||||||||||||||||| |
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| T |
7520058 |
gagaagaaagagttgatagagttgttgtttaacactagcaacaatgtgacagagaatgtttcagttatttctataattggaattggaggacttggaaaga |
7520157 |
T |
|
| Q |
109 |
ccgcagttgctcaacgtgtgtacaatgataaaaccgttcaacagcattttgaattgaaaaagtgggtgtgtgttgctga |
187 |
Q |
| |
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| ||| |||||||| ||| |||||||| || | || ||| | |||||||| || ||||| ||||| |||||| |||| |
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| T |
7520158 |
ctgcacttgctcaatttgtatacaatgacaagaaagtgcaagaacattttgagtttaaaaaatgggtttgtgtttctga |
7520236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 209 - 408
Target Start/End: Original strand, 7482171 - 7482368
Alignment:
| Q |
209 |
ttttgatgtagaaggtattgctgcaaagatcttagaatctaagactcgtgatgagatggatcgcaagtgcaacaagaactccgtacaaaaattgacggaa |
308 |
Q |
| |
|
|||||||||| |||||||||| |||||||| |||||||||| ||| ||||||||||||| |||||||| || |||||| |||| |||| |||| |
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| T |
7482171 |
ttttgatgtaaaaggtattgcatcaaagatcatagaatctaaaactaatgatgagatggat--aaagtgcaattggagctccgtgaaaaagttgaaggaa |
7482268 |
T |
|
| Q |
309 |
atagatatttgctcattttagatgacatgtggaatgaggaccgtgaaaattggcttcagttgatgacattgttgatggatggagcaaaaggaagtaaaat |
408 |
Q |
| |
|
||||||||||| | || ||||||| ||||||||||| ||||| ||||||| | ||||||| | || ||| | |||||||||||||||||||| |
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|
| T |
7482269 |
gaagatatttgcttgtcttggatgacaattggaatgaggatcgtgatctttggcttgaattgatgagactgctgaaaggcggagcaaaaggaagtaaaat |
7482368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 9 - 109
Target Start/End: Complemental strand, 7714136 - 7714036
Alignment:
| Q |
9 |
gagaagaaggatttgataaagttattgttgaacactgacatcgatgtcaaaggaaatgtttcagttatttccatcattggaattggaggacttggaaaga |
108 |
Q |
| |
|
|||||||| || |||||| |||| ||||| ||||| | || |||||| || | ||||||||||||||||| || |||||||| |||||||||||||||| |
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|
| T |
7714136 |
gagaagaaagagttgatagagttgttgtttaacaccggcaacgatgtgaaggagaatgtttcagttatttctataattggaatcggaggacttggaaaga |
7714037 |
T |
|
| Q |
109 |
c |
109 |
Q |
| |
|
| |
|
|
| T |
7714036 |
c |
7714036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 63 - 187
Target Start/End: Complemental strand, 7722369 - 7722245
Alignment:
| Q |
63 |
aatgtttcagttatttccatcattggaattggaggacttggaaagaccgcagttgctcaacgtgtgtacaatgataaaaccgttcaacagcattttgaat |
162 |
Q |
| |
|
||||||||||||||||| || ||||||||||||||||| |||||||| || ||||||||| ||| ||| || ||| || ||||| |||||||| | |
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|
| T |
7722369 |
aatgtttcagttatttctataattggaattggaggactcggaaagactgcgcttgctcaacttgtatacggcgacaaagaagtgcaacaacattttgagt |
7722270 |
T |
|
| Q |
163 |
tgaaaaagtgggtgtgtgttgctga |
187 |
Q |
| |
|
||||||| ||||| |||||| |||| |
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|
| T |
7722269 |
tgaaaaaatgggtttgtgtttctga |
7722245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 209 - 408
Target Start/End: Original strand, 7520240 - 7520437
Alignment:
| Q |
209 |
ttttgatgtagaaggtattgctgcaaagatcttagaatctaagactcgtgatgagatggatcgcaagtgcaacaagaactccgtacaaaaattgacggaa |
308 |
Q |
| |
|
|||||||||| |||||||||||||||||||| ||||||| | ||| || |||||||||| |||| ||| ||||||||| |||| |||| |||| |
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|
| T |
7520240 |
ttttgatgtaaaaggtattgctgcaaagatcacagaatctcaaactaatgttgagatggat--aaagttcaattggaactccgtgaaaaagttgaaggaa |
7520337 |
T |
|
| Q |
309 |
atagatatttgctcattttagatgacatgtggaatgaggaccgtgaaaattggcttcagttgatgacattgttgatggatggagcaaaaggaagtaaaat |
408 |
Q |
| |
|
||||||||||| | || ||||||| ||||||||||| ||| | ||||||| | ||||||||| || ||| ||||| ||| ||||||||||||| |
|
|
| T |
7520338 |
gaagatatttgcttgtcttggatgacaattggaatgaggatcgtaatctttggcttgaattgatgacactgctgaaagatggcgcagaaggaagtaaaat |
7520437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 21 - 187
Target Start/End: Original strand, 7494403 - 7494569
Alignment:
| Q |
21 |
ttgataaagttattgttgaacactgacatcgatgtcaaaggaaatgtttcagttatttccatcattggaattggaggacttggaaagaccgcagttgctc |
120 |
Q |
| |
|
|||||| |||| ||||| ||||| | || | |||| |||| ||||||||||||||||| || |||||||| |||||||| || ||||| || |||||| |
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|
| T |
7494403 |
ttgatagagttgttgtttaacaccggcaacaatgtgaaagagaatgtttcagttatttctataattggaatcggaggactggggaagactgcgcttgctc |
7494502 |
T |
|
| Q |
121 |
aacgtgtgtacaatgataaaaccgttcaacagcattttgaattgaaaaagtgggtgtgtgttgctga |
187 |
Q |
| |
|
|| ||| |||||||| || | || |||| |||||||| || ||||| ||||| |||||| |||| |
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|
| T |
7494503 |
aatttgtatacaatgacaagaaagtgaaacaacattttgagtttaaaaaatgggtttgtgtttctga |
7494569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 311 - 408
Target Start/End: Complemental strand, 7128867 - 7128770
Alignment:
| Q |
311 |
agatatttgctcattttagatgacatgtggaatgaggaccgtgaaaattggcttcagttgatgacattgttgatggatggagcaaaaggaagtaaaat |
408 |
Q |
| |
|
||||||||||| | || ||||||| ||||||||||| ||||| ||||||||| |||||||||||||||| || || ||| ||||||||||||| |
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|
| T |
7128867 |
agatatttgcttgtcttggatgacaattggaatgaggatcgtgatctttggcttcaattgatgacattgttgaaagacggcgcagaaggaagtaaaat |
7128770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 209 - 265
Target Start/End: Complemental strand, 7722241 - 7722185
Alignment:
| Q |
209 |
ttttgatgtagaaggtattgctgcaaagatcttagaatctaagactcgtgatgagat |
265 |
Q |
| |
|
|||||||||| ||||||||||| |||||||| |||||||||| ||| ||| |||||| |
|
|
| T |
7722241 |
ttttgatgtaaaaggtattgcttcaaagatcatagaatctaaaactagtgttgagat |
7722185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 209 - 250
Target Start/End: Original strand, 7528290 - 7528331
Alignment:
| Q |
209 |
ttttgatgtagaaggtattgctgcaaagatcttagaatctaa |
250 |
Q |
| |
|
|||||||||| |||||||||||||||||||| || ||||||| |
|
|
| T |
7528290 |
ttttgatgtaaaaggtattgctgcaaagatcataaaatctaa |
7528331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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