View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5875_low_1 (Length: 660)
Name: NF5875_low_1
Description: NF5875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5875_low_1 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 602; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 602; E-Value: 0
Query Start/End: Original strand, 19 - 660
Target Start/End: Complemental strand, 53581735 - 53581094
Alignment:
| Q |
19 |
acttacctttccttaatttccactgacatttattcatgaaacacctaactaccgtcacgctcattgcacctccttatattaacattaataatttgttact |
118 |
Q |
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| T |
53581735 |
acttacctttccttaatttccactgacatttattcatgaaacacctaactaccatcacgctcattgcacctccttatattaacatttataatttgttact |
53581636 |
T |
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| Q |
119 |
attatttttcaaccacatatgtgtaacttttcttctagtttgtttctttcttgcaacatataaagaccacccaaaaataagtagtgttggccacaaaaac |
218 |
Q |
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| T |
53581635 |
attattttccaaccacatatgtgtaacttttcttctagtttgtttctttcttgcaacatataaagaccacccaaaaataagcagtgttggccacaaaaac |
53581536 |
T |
|
| Q |
219 |
atcaaagattgatcttagttatacatgttttcaattgcacgtttgaaaaactggatgtctagagataaaggtgaatcagttaatgttgaaaaactacatg |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53581535 |
atcaaagattgatcttagttatacatgttttcaattgcacgtttgaaaaactggatgtctagagataaaggtgaatcagttaatgttgaaaaactacatg |
53581436 |
T |
|
| Q |
319 |
tggccattttggcattcccatttggaacacatgcaggtccactccttagccttgctagaaggattgctgtagatgctcataaagttacattttcattctt |
418 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53581435 |
tggccgttttggcattcccatttggaacacatgcaggtccactccttaaccttgctagaaggattgctgtagatgctcataaagttacattttcattctt |
53581336 |
T |
|
| Q |
419 |
gtgcacaagcagaaaaaatgctgctttattttctggatcaaatgactatgatgagtttcttcctaacataaagcattatgatgttcatgatggattacca |
518 |
Q |
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| T |
53581335 |
gtgcacaagcagaacaaatgccgctttattttctggatcaaaagactatgatgagtttcttcctaacataaagcattatgatgttcatgatggattacca |
53581236 |
T |
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| Q |
519 |
gaaggttatgtgccttcaggacacccacttgaacccattttcatcttcattaaggcaatgccagataactataagagtgttatggttaaagctgtggcag |
618 |
Q |
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| T |
53581235 |
gaagggtatgtgccttcaggacacccacttgaacccattttcatcttcattaaggcaatgccagataactataagagtgttatggttaaagctgtggcag |
53581136 |
T |
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| Q |
619 |
agacagggaagaacattacttgtttagttactgatgcatttt |
660 |
Q |
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| T |
53581135 |
agacagggaagaacattacttgtttagttactgatgcatttt |
53581094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 313 - 660
Target Start/End: Complemental strand, 53568142 - 53567804
Alignment:
| Q |
313 |
tacatgtggccattttggcattcccatttggaacacatgcaggtccactccttagccttgctagaaggattgctgtagatgctcataaagttacattttc |
412 |
Q |
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|||||||||| ||||||||||||||||||| |||||||| | ||||||||||||||| | | || |||||| ||| |||| ||||||||||||||| |
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| T |
53568142 |
tacatgtggctgttttggcattcccatttggcacacatgctgctccactccttagcctagtgaaaaaaattgctacagaggctcctaaagttacattttc |
53568043 |
T |
|
| Q |
413 |
attcttgtgcacaagcagaaaaaatgctgctttattttctggatcaaatgactatgatgagtttcttcctaacataaagcattatgatgttcatgatgga |
512 |
Q |
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|||||| ||||||| || || ||||| | ||||||||||| | ||||| || ||||||||| ||||||||| ||||| ||||||||||||| |
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| T |
53568042 |
attcttctgcacaaccacaacaaatgatactttattttctaggtcaaacga---------gtttcttccaaacataaagtattataatgttcatgatggg |
53567952 |
T |
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| Q |
513 |
ttaccagaaggttatgtgccttcaggacacccacttgaacccattttcatcttcattaaggcaatgccagataactataagagtgttatggttaaagctg |
612 |
Q |
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|||||| ||||||| || |||| || | |||| |||||| ||||| ||||||||||||| |||| ||| |||| |||| |||||| | | |||||| |
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| T |
53567951 |
ttaccaaaaggttacgtatcttctgggaatccacgtgaaccaatttttctcttcattaaggccatgcaagagaactttaagcatgttattgatgaagctg |
53567852 |
T |
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| Q |
613 |
tggcagagacagggaagaacattacttgtttagttactgatgcatttt |
660 |
Q |
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| T |
53567851 |
tggcagagacagggaagaacattacttgtttggttactgatgcatttt |
53567804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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