View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5875_low_12 (Length: 441)
Name: NF5875_low_12
Description: NF5875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5875_low_12 |
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| [»] chr2 (3 HSPs) |
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| [»] scaffold0041 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 382; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 11 - 441
Target Start/End: Complemental strand, 40665672 - 40665240
Alignment:
| Q |
11 |
acatcatcataaccaacttcatcaagtctttcttcatcctctcttttcacaggttccccctcacagaagacctcagtgtctggagcaaccacacagaact |
110 |
Q |
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| T |
40665672 |
acatcatcataaccaacttcatcaagtctttcttcatcatctcttttcacaggttccccctcacagaagatctcagtgtctggagcaaccgtacagtact |
40665573 |
T |
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| Q |
111 |
ccccaggatcagtttcaatgaccttaaactctacacttctcatccctccccgcacaagaaatagatctccttttctgacgggacgataagcttccacgaa |
210 |
Q |
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| T |
40665572 |
caccaggatcagtttcaatgaccttaaactctacacttctcatccctccccgcacaagaaatagatctccttttctgacgggacgataagcttccacgaa |
40665473 |
T |
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| Q |
211 |
atacgctgtaaattacatacattaaaaaagttaagacttgtgc--aaagattaacatatacatataacatattcaaaatgtaaaattataatgcctctaa |
308 |
Q |
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| T |
40665472 |
ataggctgtaaattatatacattaaaaaagttaagacttgtgcaaaaagattaacatatacatataacatattcaaaatgtaaaattataatgcctctaa |
40665373 |
T |
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| Q |
309 |
gacactaaagtttaaagattagacaaagctagcaaaaccaagtgatgaaaggtgggaactcacgtttcaagaatgcatcaaagagatttccagtgagacc |
408 |
Q |
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| T |
40665372 |
gaaactaaagtttaaagattagacaaagctagcaaaaccaagtgatgaaaggtgggaactcacgtttcaagaaagcatcaaagagatttccagtgagacc |
40665273 |
T |
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| Q |
409 |
ttcaattgtatcatcaataggcagaatgtgcac |
441 |
Q |
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| T |
40665272 |
ttcaattgtatcatcaataggcagaatgtgcac |
40665240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 11 - 271
Target Start/End: Original strand, 40724382 - 40724641
Alignment:
| Q |
11 |
acatcatcataaccaacttcatcaagtctttcttcatcctctcttttcacaggttccccctcacagaagacctcagtgtctggagcaaccacacagaact |
110 |
Q |
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| T |
40724382 |
acatcatcataaccgacttcatcaagcctttcttcatcctctcttttcacgggttccccctcgcagaagacctcagtgtctggagcaaccgcacagaact |
40724481 |
T |
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| Q |
111 |
ccccaggatcagtttcaatgaccttaaactctacacttctcatccctccccgcacaagaaatagatctccttttctgacgggacgataagcttccacgaa |
210 |
Q |
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| T |
40724482 |
ccccaggatcagtttcattgaccttaaattctacacttctcatccctccccgcacaagaaatagatctccttttctgaccggacaataagcctccaagaa |
40724581 |
T |
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| Q |
211 |
atacgctgtaaattacatacattaaaaaagttaagacttgtgcaaagattaacatatacat |
271 |
Q |
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| T |
40724582 |
ataggctgtaaattagatacatcaaaaaagtt-agacttgtgcagagacaaaaatatacat |
40724641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 330 - 441
Target Start/End: Original strand, 40725193 - 40725304
Alignment:
| Q |
330 |
gacaaagctagcaaaaccaagtgatgaaaggtgggaactcacgtttcaagaatgcatcaaagagatttccagtgagaccttcaattgtatcatcaatagg |
429 |
Q |
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| T |
40725193 |
gacaaagctagcaaaaccaagtgatgaaaggtgggaactcacgtttcaagaaagcatcaaagagatttccagtgagaccttcaattgtatcatcaatagg |
40725292 |
T |
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| Q |
430 |
cagaatgtgcac |
441 |
Q |
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| T |
40725293 |
cagaatgtgcac |
40725304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 365 - 423
Target Start/End: Complemental strand, 109551 - 109493
Alignment:
| Q |
365 |
aactcacgtttcaagaatgcatcaaagagatttccagtgagaccttcaattgtatcatc |
423 |
Q |
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| T |
109551 |
aactcacgttttaagtatgcatcaaagagattcccagtaactccttcaatagtatcatc |
109493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 365 - 423
Target Start/End: Original strand, 41093745 - 41093803
Alignment:
| Q |
365 |
aactcacgtttcaagaatgcatcaaagagatttccagtgagaccttcaattgtatcatc |
423 |
Q |
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| T |
41093745 |
aactcacgttttaagtatgcatcaaagagattcccagtaactccttcaatagtatcatc |
41093803 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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