View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5875_low_15 (Length: 407)
Name: NF5875_low_15
Description: NF5875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5875_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 1 - 389
Target Start/End: Original strand, 39907786 - 39908174
Alignment:
| Q |
1 |
ataaaacaccccctttcccctcaatgggatgtggccatcatatcctcagagtacctactttcgtggatccactaccactgtgagtatctttatcctcttt |
100 |
Q |
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| T |
39907786 |
ataaaacactccatttcccctcaatgggatgtggccatcatatcctcggagtacctactttcgtggatccactaccactgtgagtatctttatcctcttt |
39907885 |
T |
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| Q |
101 |
gggtaaatttttcgactagttatgaacataagtcttataaaagtacagtactcgtaaattttagaagagaatcttatattctagaactgtttaatttttc |
200 |
Q |
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| T |
39907886 |
gggtaaatttttcgactagttatgaacataagtcttataaaagtacagtactcgtaaatttttcaagagaatcttatattctagaactgtttaatttttc |
39907985 |
T |
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| Q |
201 |
taatcatacttagtcaacttggaccaatcctactttaaccaactgtcttaactaannnnnnnattcaacctttgattttgactagaccgtgctaacttgt |
300 |
Q |
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| T |
39907986 |
taatcatacttggtcaacttggaccaatcctactttaaccaactgtcttaactaatttttttattcaacctttgattttgactagaccgtgctaacttgt |
39908085 |
T |
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| Q |
301 |
ttaagttcctactaatccaagacagttcgcaacattattgcaaacatgctgcgtaattgttgttatttgtttaacccccatctcattac |
389 |
Q |
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| T |
39908086 |
ttaagttcctactaatccaagacagttcgcaacattattgcaaacatgctgcgtaattgttgttatttgtttaacccccatctcattac |
39908174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 55 - 109
Target Start/End: Original strand, 4027959 - 4028013
Alignment:
| Q |
55 |
ctactttcgtggatccactaccactgtgagtatctttatcctctttgggtaaatt |
109 |
Q |
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| T |
4027959 |
ctacttccgtcgctccaccaccactgtaagtatctttatcctctttggataaatt |
4028013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 74 - 110
Target Start/End: Complemental strand, 6119861 - 6119825
Alignment:
| Q |
74 |
accactgtgagtatctttatcctctttgggtaaattt |
110 |
Q |
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| T |
6119861 |
accactgtaagtatctttatcctctttggctaaattt |
6119825 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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