View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5875_low_17 (Length: 381)
Name: NF5875_low_17
Description: NF5875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5875_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 13 - 363
Target Start/End: Complemental strand, 4242484 - 4242134
Alignment:
| Q |
13 |
ataccagggtggaaatagtgcaataaggaattcaaaatgttacattcatgaaagttacaaatttcnnnnnnnnnnnnnnnggtatggttgatggatatta |
112 |
Q |
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| T |
4242484 |
ataccagggtggaaatagtgcaataaggaattcaaaatgttacattcatgaaagttacgaatttcagaagaaaaaaaaaaggtatggttgatggatatta |
4242385 |
T |
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| Q |
113 |
tgaggaccaagaatcattgcgttgaatatttcaaattgactagtgttgtggcaaaaataacgaccatgcataagtatgatgcacaaaaagatacatgtgt |
212 |
Q |
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| T |
4242384 |
tgaggaccaagaatcattgtgttgaatatctcaaattgactagtgatgtggcaaaaataacgaccatgcataagtatgatgcacaaaaagatacatgtgt |
4242285 |
T |
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| Q |
213 |
gctgagaaagtaaaaagcacacagattatgaatggctaacattacataaaacaggttttggaattatatcaacaattcatttccacattttcttttgtgg |
312 |
Q |
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| T |
4242284 |
gctgagaaagtaaaaagcacacagattatgaatggctaacattacataaaacaggttttggaattatatcaacaattcatttccacattttcttttgtgg |
4242185 |
T |
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| Q |
313 |
tttgtgcgttaaatgaatgtttacgtatcaatggtcatgaatctctgctct |
363 |
Q |
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| T |
4242184 |
tttgtgcgttaaatgaatgtttacatatcaatgctcatgaatctctgctct |
4242134 |
T |
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