View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5875_low_2 (Length: 655)

Name: NF5875_low_2
Description: NF5875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5875_low_2
NF5875_low_2
[»] chr7 (6 HSPs)
chr7 (11-640)||(13706058-13706684)
chr7 (11-640)||(13643609-13644235)
chr7 (197-586)||(17173704-17174093)
chr7 (445-593)||(13467837-13467985)
chr7 (196-264)||(13425399-13425467)
chr7 (92-180)||(17173578-17173666)
[»] chr4 (1 HSPs)
chr4 (197-600)||(34653473-34653876)
[»] chr1 (1 HSPs)
chr1 (444-586)||(25522613-25522755)


Alignment Details
Target: chr7 (Bit Score: 520; Significance: 0; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 520; E-Value: 0
Query Start/End: Original strand, 11 - 640
Target Start/End: Complemental strand, 13706684 - 13706058
Alignment:
Q  11 cacagacacaattgataaccacttccaaaaaccaaataaaatatccatggcaactttattggtaataaacaaagacaacaccttaagggttactatatat 110  Q
    |||| ||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  13706684 cacaaacacaattggtaaccacttccaaaaaccaaacaaaatatccatggcaactttattagtaataaacaaagacaacaccttaagggttactatatat 13706585  T
Q  111 cttctccatgaggtcaatttcctgctttataggaattttaggaaaaaactccattccatttgatccaaacccatttttcattctatcatcatcatcattg 210  Q
    ||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| ||  |||||   ||||||||||||||    
T  13706584 cttctccattaggtcaatttcctgctttataggaatttcaggaaaaaactccattccatttgatctaaacccacttgccattc---catcatcatcattg 13706488  T
Q  211 aacatcaatggcacatagccaccaatttcatcttttggagtagacaaaccttcagagaaaaaatcactctcagaactttcataatttggctgattcccga 310  Q
    ||||||| ||||||||||||||||||| |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13706487 aacatcattggcacatagccaccaattccatcttctggagtagtcaaaccttcagagaaaaaatcactctcagaactttcataatttggctgattcccga 13706388  T
Q  311 tattcatcatgctcagagaattattcatcatctccttttcaactttcttggcagaagtaacttccattatgtatttcaaaagtagtgttgcctttgaact 410  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||    
T  13706387 tattcatcatgctcggagaattattcatcatctccttttcaactttcttggcagaagtaacttccattatgtatttcaaaagcagtgttccctttgaact 13706288  T
Q  411 gttacctcgattctttttcttggctttctggcggcgcttagtggcgttccagtggtttttgacggagttctcggtgcgccccggcattctccttgcaatt 510  Q
    ||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  13706287 gttacctcgattctttttcttggctttctggcgtcgcttagtggtgttccagtggtttttgacggagttctcggtgcgccccggcaatctccttgcaatt 13706188  T
Q  511 tccacccacttgttaccaactatcttgtgagcttcgatcaatattttgtcttcctcttcggtccatgactccttcttcaatcattcaaaaaagttaataa 610  Q
    ||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  13706187 tccgcccacttgttaccaactatcttgtgagcttcaatcaatattttgtcttcctcctcggtccatgactccttcttcaatcattcaaaaaagttaataa 13706088  T
Q  611 atggattagttatataaatatgattaaatt 640  Q
    || |||||||||||||||||||||||||||    
T  13706087 atagattagttatataaatatgattaaatt 13706058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 492; E-Value: 0
Query Start/End: Original strand, 11 - 640
Target Start/End: Complemental strand, 13644235 - 13643609
Alignment:
Q  11 cacagacacaattgataaccacttccaaaaaccaaataaaatatccatggcaactttattggtaataaacaaagacaacaccttaagggttactatatat 110  Q
    |||| ||||||||| ||||||||| |||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  13644235 cacaaacacaattggtaaccactttcaaacaccaaacaaaatatccatggcaactttattggtaataaacaaagacaacaccttaagggtttctatatat 13644136  T
Q  111 cttctccatgaggtcaatttcctgctttataggaattttaggaaaaaactccattccatttgatccaaacccatttttcattctatcatcatcatcattg 210  Q
    |||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| ||  |||||   ||||||||||||||    
T  13644135 cttctccatgaggtcaatttcctgctttttaggaatttcaggaaaaaactccattccatttgatccaaacccacttgccattc---catcatcatcattg 13644039  T
Q  211 aacatcaatggcacatagccaccaatttcatcttttggagtagacaaaccttcagagaaaaaatcactctcagaactttcataatttggctgattcccga 310  Q
    ||||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13644038 aacatcattggcacatagccaccaatttcatcttctggagtagtcaaaccttcagagaaaaaatcactctcagaactttcataatttggctgattcccga 13643939  T
Q  311 tattcatcatgctcagagaattattcatcatctccttttcaactttcttggcagaagtaacttccattatgtatttcaaaagtagtgttgcctttgaact 410  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |||||| ||||||||||    
T  13643938 tattcatcatgctcagagaattagtcatcatctccttttcaactttcttggcacaagtgacttccattatgtatttcaaaagcagtgttccctttgaact 13643839  T
Q  411 gttacctcgattctttttcttggctttctggcggcgcttagtggcgttccagtggtttttgacggagttctcggtgcgccccggcattctccttgcaatt 510  Q
    |||||||||||||||||||||||||||| ||| |||||||||||||||||| ||||||||||||||||||||||||||||||| || ||| |||| ||||    
T  13643838 gttacctcgattctttttcttggctttcaggcagcgcttagtggcgttccaatggtttttgacggagttctcggtgcgccccgacaatcttcttgaaatt 13643739  T
Q  511 tccacccacttgttaccaactatcttgtgagcttcgatcaatattttgtcttcctcttcggtccatgactccttcttcaatcattcaaaaaagttaataa 610  Q
    ||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| |    
T  13643738 tccgcccacttgttaccaactatcttgtgagcttcgaccaatattttgtcttcctcctcggtccatgcctccttcttcaatcattcaaaaaagttaatta 13643639  T
Q  611 atggattagttatataaatatgattaaatt 640  Q
    ||||||||||||||||||||||||||||||    
T  13643638 atggattagttatataaatatgattaaatt 13643609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 197 - 586
Target Start/End: Original strand, 17173704 - 17174093
Alignment:
Q  197 catcatcatcattgaacatcaatggcacatagccaccaatttcatcttttggagtagacaaaccttcagagaaaaaatcactctcagaactttcataatt 296  Q
    |||||||| |||||||||||| ||| |||||  ||| |||||  |  | |||||||| |||||||||||    |||||||||||  || |||||| ||||    
T  17173704 catcatcaccattgaacatcattggaacatactcacaaattttgttctctggagtagtcaaaccttcagttctaaaatcactctttgagctttcaaaatt 17173803  T
Q  297 tggctgattcccgatattcatcatgctcagagaattattcatcatctccttttcaactttcttggcagaagtaacttccattatgtatttcaaaagtagt 396  Q
      | |||||    |||| ||||||||||  |||||   |||||  |||||||||||||| ||| |||   || ||||||||||||||||||| ||| |||    
T  17173804 cagttgatttttaatatccatcatgctcgtagaatacgtcatcggctccttttcaacttccttagcatcggtgacttccattatgtatttcagaagaagt 17173903  T
Q  397 gttgcctttgaactgttacctcgattctttttcttggctttctggcggcgcttagtggcgttccagtggtttttgacggagttctcggtgcgccccggca 496  Q
     || |||||||||| |||||||| |||||  ||||||  || ||||| ||||||||||| ||||||||||| |||| ||||||||| |||||||| ||||    
T  17173904 attccctttgaactcttacctcggttcttcctcttgggattttggcgacgcttagtggcattccagtggttcttgatggagttctcagtgcgccctggca 17174003  T
Q  497 ttctccttgcaatttccacccacttgttaccaactatcttgtgagcttcgatcaatattttgtcttcctcttcggtccatgactccttct 586  Q
     |||||||| ||||||   ||||||||| |||||||| |||||||||||||| | ||||||||||||||||||||||||||| |||||||    
T  17174004 atctccttgaaatttcagtccacttgtttccaactattttgtgagcttcgattagtattttgtcttcctcttcggtccatgaatccttct 17174093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 445 - 593
Target Start/End: Original strand, 13467837 - 13467985
Alignment:
Q  445 cgcttagtggcgttccagtggtttttgacggagttctcggtgcgccccggcattctccttgcaatttccacccacttgttaccaactatcttgtgagctt 544  Q
    |||||||||| ||||||| |||| |||| ||||||||| ||||| || |||| ||| |||||||||||  |||||||||| ||||||  |||||| ||||    
T  13467837 cgcttagtggagttccagcggttcttgatggagttctcagtgcgtccaggcagtctacttgcaatttcagcccacttgtttccaactgccttgtgtgctt 13467936  T
Q  545 cgatcaatattttgtcttcctcttcggtccatgactccttcttcaatca 593  Q
    ||||||||| | |||||||||||||| ||||||||||||||| ||||||    
T  13467937 cgatcaataatatgtcttcctcttcgctccatgactccttctacaatca 13467985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 196 - 264
Target Start/End: Original strand, 13425399 - 13425467
Alignment:
Q  196 tcatcatcatcattgaacatcaatggcacatagccaccaatttcatcttttggagtagacaaaccttca 264  Q
    |||| ||||||||||||| ||| ||||||||| ||||||| |||||||| |  ||||| ||||||||||    
T  13425399 tcataatcatcattgaacgtcattggcacatatccaccaagttcatcttctaaagtagtcaaaccttca 13425467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 92 - 180
Target Start/End: Original strand, 17173578 - 17173666
Alignment:
Q  92 cttaagggttactatatatcttctccatgaggtcaatttcctgctttataggaattttaggaaaaaactccattccatttgatccaaac 180  Q
    ||||||||||  |||  ||| |||||||||| |||||||| || || | |||||  | |||||||||||| ||||||| ||||||||||    
T  17173578 cttaagggtttttattgatcatctccatgagatcaatttcttgattaagaggaacctcaggaaaaaactcaattccatatgatccaaac 17173666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 152; Significance: 4e-80; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 152; E-Value: 4e-80
Query Start/End: Original strand, 197 - 600
Target Start/End: Original strand, 34653473 - 34653876
Alignment:
Q  197 catcatcatcattgaacatcaatggcacatagccaccaatttcatcttttggagtagacaaaccttcagagaaaaaatcactctcagaactttcataatt 296  Q
    |||||||| |||||||||||| |||  |||| ||| ||||||| || |||||| ||  |||||||||||||  |||||||||||| || |||||| | ||    
T  34653473 catcatcaccattgaacatcattggagcatacccatcaatttcctcatttggattaaccaaaccttcagagctaaaatcactctccgagctttcaaagtt 34653572  T
Q  297 tggctgattcccgatattcatcatgctcagagaattattcatcatctccttttcaactttcttggcagaagtaacttccattatgtatttcaaaagtagt 396  Q
    ||| |||||||| |  ||||||| ||||  ||||||  |||||| |||||||||| ||| ||| |||  | | |||||||||||||||||||| ||||||    
T  34653573 tgggtgattcccaaatttcatcacgctcgtagaattcgtcatcagctccttttcagcttccttagcatcattgacttccattatgtatttcaagagtagt 34653672  T
Q  397 gttgcctttgaactgttacctcgattctttttcttggctttctggcggcgcttagtggcgttccagtggtttttgacggagttctcggtgcgccccggca 496  Q
     || |||||||||| ||||  ||||||||| |||| |  || ||||||||||| ||||||||||||||||| ||||  |||||||||||||||||  |||    
T  34653673 tttccctttgaactattactccgattctttctcttagtattatggcggcgcttggtggcgttccagtggttcttgattgagttctcggtgcgcccttgca 34653772  T
Q  497 ttctccttgcaatttccacccacttgttaccaactatcttgtgagcttcgatcaatattttgtcttcctcttcggtccatgactccttcttcaatcattc 596  Q
    ||||| ||||||||||  |||||||||| ||||||||||| ||||||||||| | ||||||||| || |||||||||||||| ||||||| ||||||| |    
T  34653773 ttctctttgcaatttcagcccacttgttcccaactatcttatgagcttcgattagtattttgtcctcttcttcggtccatgaatccttctacaatcatac 34653872  T
Q  597 aaaa 600  Q
    ||||    
T  34653873 aaaa 34653876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 5e-27; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 444 - 586
Target Start/End: Complemental strand, 25522755 - 25522613
Alignment:
Q  444 gcgcttagtggcgttccagtggtttttgacggagttctcggtgcgccccggcattctccttgcaatttccacccacttgttaccaactatcttgtgagct 543  Q
    |||||||| || ||||||  |||| |||| |||||||||||| || || || | |||| ||||||||||  |  ||||||| ||||||||||||||||||    
T  25522755 gcgcttagcggagttccaacggttcttgatggagttctcggtacgtccaggaagtctctttgcaatttcagcaaacttgttcccaactatcttgtgagct 25522656  T
Q  544 tcgatcaatattttgtcttcctcttcggtccatgactccttct 586  Q
    ||||||||||||||||||||||||||  |||||||||| ||||    
T  25522655 tcgatcaatattttgtcttcctcttcactccatgactctttct 25522613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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