View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5875_low_20 (Length: 373)

Name: NF5875_low_20
Description: NF5875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5875_low_20
NF5875_low_20
[»] chr4 (3 HSPs)
chr4 (1-272)||(4093616-4093887)
chr4 (283-354)||(55849519-55849590)
chr4 (212-268)||(49541175-49541231)
[»] chr8 (7 HSPs)
chr8 (283-368)||(4678075-4678160)
chr8 (282-368)||(4676129-4676215)
chr8 (283-354)||(12062765-12062837)
chr8 (283-338)||(369263-369318)
chr8 (314-354)||(35416188-35416228)
chr8 (312-354)||(31909197-31909238)
chr8 (301-354)||(3785888-3785940)
[»] chr5 (3 HSPs)
chr5 (283-368)||(39040622-39040707)
chr5 (282-338)||(27172940-27172996)
chr5 (301-354)||(18587468-18587521)
[»] chr3 (8 HSPs)
chr3 (282-354)||(35610796-35610868)
chr3 (283-354)||(20868675-20868747)
chr3 (283-354)||(20871313-20871385)
chr3 (283-354)||(51308791-51308862)
chr3 (283-354)||(24595209-24595276)
chr3 (297-354)||(447169-447226)
chr3 (281-353)||(51306328-51306400)
chr3 (316-354)||(27462140-27462178)
[»] chr2 (1 HSPs)
chr2 (281-352)||(26608108-26608179)
[»] chr1 (3 HSPs)
chr1 (283-350)||(20225594-20225661)
chr1 (284-349)||(20226953-20227018)
chr1 (301-354)||(16385581-16385633)
[»] chr6 (3 HSPs)
chr6 (283-354)||(9664731-9664802)
chr6 (283-354)||(787267-787338)
chr6 (283-333)||(3074909-3074959)
[»] chr7 (2 HSPs)
chr7 (301-354)||(2576998-2577050)
chr7 (301-342)||(26389192-26389233)


Alignment Details
Target: chr4 (Bit Score: 272; Significance: 1e-152; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 272
Target Start/End: Original strand, 4093616 - 4093887
Alignment:
Q  1 cggcacttgtgtgtcattgtgaatttgtgacaatttttgttagttaattattattaatcaaaagtttataagaacttttttgtgagtgaagactttttgt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4093616 cggcacttgtgtgtcattgtgaatttgtgacaatttttgttagttaattattattaatcaaaagtttataagaacttttttgtgagtgaagactttttgt 4093715  T
Q  101 gacaaatcttctactgtgtactgctcttgtgactagggaaaggttatggatgaagtaaaaacaatctggcattgccatgaataaatattctgtcttgata 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4093716 gacaaatcttctactgtgtactgctcttgtgactagggaaaggttatggatgaagtaaaaacaatctggcattgccatgaataaatattctgtcttgata 4093815  T
Q  201 aattgaaattatatgatagatgctatcagtaataccaacttggtgcccagaatattcattcatgtcacaact 272  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4093816 aattgaaattatatgatagatgctatcagtaataccaacttggtgcccagaatattcattcatgtcacaact 4093887  T

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Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 283 - 354
Target Start/End: Complemental strand, 55849590 - 55849519
Alignment:
Q  283 tattaagaataatgatatagttagttagagtactagtttagttactatataagtcacaaggttgactcattt 354  Q
    ||||||||||||||||||||||||||||   ||||||| ||||||||||||||||||| |||||||||||||    
T  55849590 tattaagaataatgatatagttagttaggacactagttcagttactatataagtcacatggttgactcattt 55849519  T

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Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 212 - 268
Target Start/End: Complemental strand, 49541231 - 49541175
Alignment:
Q  212 tatgatagatgctatcagtaataccaacttggtgcccagaatattcattcatgtcac 268  Q
    |||||||||||| ||||||| ||| |||| |||||||||||||||||||||||||||    
T  49541231 tatgatagatgccatcagtattactaactaggtgcccagaatattcattcatgtcac 49541175  T

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Target: chr8 (Bit Score: 86; Significance: 5e-41; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 283 - 368
Target Start/End: Original strand, 4678075 - 4678160
Alignment:
Q  283 tattaagaataatgatatagttagttagagtactagtttagttactatataagtcacaaggttgactcattttggatatctcttat 368  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4678075 tattaagaataatgatatagttagttagagtactagtttagttactatataagtcacaaggttgactcattttggatatctcttat 4678160  T

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Target: chr8; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 282 - 368
Target Start/End: Original strand, 4676129 - 4676215
Alignment:
Q  282 ttattaagaataatgatatagttagttagagtactagtttagttactatataagtcacaaggttgactcattttggatatctcttat 368  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  4676129 ttattaagaataatgatatagttagttagagtactagtttagttactatataagtcacagggttgactcattttggatatctcttat 4676215  T

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Target: chr8; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 283 - 354
Target Start/End: Original strand, 12062765 - 12062837
Alignment:
Q  283 tattaagaataatgatatagttagttagagtactagttt-agttactatataagtcacaaggttgactcattt 354  Q
    |||||||||||||||||||||||||||   ||||||||| ||||||||||||||||||| |||||||||||||    
T  12062765 tattaagaataatgatatagttagttaagatactagttttagttactatataagtcacatggttgactcattt 12062837  T

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Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 283 - 338
Target Start/End: Original strand, 369263 - 369318
Alignment:
Q  283 tattaagaataatgatatagttagttagagtactagtttagttactatataagtca 338  Q
    ||||||||||||| ||||||||||||||| || |||||||||||||| ||||||||    
T  369263 tattaagaataataatatagttagttagaatagtagtttagttactaaataagtca 369318  T

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Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 314 - 354
Target Start/End: Complemental strand, 35416228 - 35416188
Alignment:
Q  314 actagtttagttactatataagtcacaaggttgactcattt 354  Q
    ||||||||||| ||||||||||||||| |||||||||||||    
T  35416228 actagtttagtgactatataagtcacatggttgactcattt 35416188  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 312 - 354
Target Start/End: Complemental strand, 31909238 - 31909197
Alignment:
Q  312 gtactagtttagttactatataagtcacaaggttgactcattt 354  Q
    ||||||||||||| |||||||||||||||| ||||||||||||    
T  31909238 gtactagtttagtcactatataagtcacaa-gttgactcattt 31909197  T

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Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 354
Target Start/End: Complemental strand, 3785940 - 3785888
Alignment:
Q  301 agttagttagagtactagtttagttactatataagtcacaaggttgactcattt 354  Q
    |||||||||| |||||| | |||| |||||||||||||||| ||||||||||||    
T  3785940 agttagttagggtactactatagtcactatataagtcacaa-gttgactcattt 3785888  T

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Target: chr5 (Bit Score: 82; Significance: 1e-38; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 283 - 368
Target Start/End: Complemental strand, 39040707 - 39040622
Alignment:
Q  283 tattaagaataatgatatagttagttagagtactagtttagttactatataagtcacaaggttgactcattttggatatctcttat 368  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  39040707 tattaagaataatgatatagttagttagagtactagtttagttactatataagtcacaaggttgactcattttgaatatctcttat 39040622  T

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Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 282 - 338
Target Start/End: Complemental strand, 27172996 - 27172940
Alignment:
Q  282 ttattaagaataatgatatagttagttagagtactagtttagttactatataagtca 338  Q
    |||||||||||||||||||||| ||||||  ||||||||||||||||||||||||||    
T  27172996 ttattaagaataatgatatagtaagttaggatactagtttagttactatataagtca 27172940  T

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Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 301 - 354
Target Start/End: Complemental strand, 18587521 - 18587468
Alignment:
Q  301 agttagttagagtactagtttagttactatataagtcacaaggttgactcattt 354  Q
    |||||||||| |||||||||  ||||||||||||||||||||||||| ||||||    
T  18587521 agttagttagggtactagttaggttactatataagtcacaaggttgattcattt 18587468  T

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Target: chr3 (Bit Score: 65; Significance: 2e-28; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 282 - 354
Target Start/End: Original strand, 35610796 - 35610868
Alignment:
Q  282 ttattaagaataatgatatagttagttagagtactagtttagttactatataagtcacaaggttgactcattt 354  Q
    |||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  35610796 ttattaagaataataatatagttagttagggtactagtttagttactatataagtcacaaggttgactcattt 35610868  T

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Target: chr3; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 283 - 354
Target Start/End: Original strand, 20868675 - 20868747
Alignment:
Q  283 tattaagaataatgatatagttagttagagtactag-tttagttactatataagtcacaaggttgactcattt 354  Q
    ||||||||||||||||||||||||||||  |||||| |||||||||||||||||||||| |||||||| ||||    
T  20868675 tattaagaataatgatatagttagttaggatactagttttagttactatataagtcacatggttgacttattt 20868747  T

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Target: chr3; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 283 - 354
Target Start/End: Original strand, 20871313 - 20871385
Alignment:
Q  283 tattaagaataatgatatagttagttagagtactagttt-agttactatataagtcacaaggttgactcattt 354  Q
    |||||||||| |||||||||||||||||  ||||||||| ||||||||||||||||||| |||||||||||||    
T  20871313 tattaagaatgatgatatagttagttaggatactagttttagttactatataagtcacatggttgactcattt 20871385  T

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Target: chr3; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 283 - 354
Target Start/End: Original strand, 51308791 - 51308862
Alignment:
Q  283 tattaagaataatgatatagttagttagagtactagtttagttactatataagtcacaaggttgactcattt 354  Q
    ||||||||||||||||||||||| ||||    ||||| |||||||||||||||||||| |||||||||||||    
T  51308791 tattaagaataatgatatagttaattaggacgctagtgtagttactatataagtcacatggttgactcattt 51308862  T

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Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 283 - 354
Target Start/End: Original strand, 24595209 - 24595276
Alignment:
Q  283 tattaagaataatgatatagttagttagagtactagtttagttactatataagtcacaaggttgactcattt 354  Q
    ||||||||||||||||||||||||   ||  ||||||||||||||||||||||||||| |||||||||||||    
T  24595209 tattaagaataatgatatagttag---gac-actagtttagttactatataagtcacatggttgactcattt 24595276  T

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Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 297 - 354
Target Start/End: Complemental strand, 447226 - 447169
Alignment:
Q  297 atatagttagttagagtactagtttagttactatataagtcacaaggttgactcattt 354  Q
    |||||||| ||||| |||||||||||| ||||||| ||||||||| ||||||||||||    
T  447226 atatagttggttagggtactagtttagatactatagaagtcacaaagttgactcattt 447169  T

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Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 281 - 353
Target Start/End: Original strand, 51306328 - 51306400
Alignment:
Q  281 tttattaagaataatgatatagttagttagagtactagtttagttactatataagtcacaaggttgactcatt 353  Q
    ||||||||||||||||||||||||| ||||   |||||| |||||||||||||| | | | ||||||||||||    
T  51306328 tttattaagaataatgatatagttaattaggacactagtgtagttactatataacttatatggttgactcatt 51306400  T

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Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 316 - 354
Target Start/End: Original strand, 27462140 - 27462178
Alignment:
Q  316 tagtttagttactatataagtcacaaggttgactcattt 354  Q
    ||||||||||||||||||||||| | |||||||||||||    
T  27462140 tagtttagttactatataagtcatatggttgactcattt 27462178  T

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Target: chr2 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 281 - 352
Target Start/End: Complemental strand, 26608179 - 26608108
Alignment:
Q  281 tttattaagaataatgatatagttagttagagtactagtttagttactatataagtcacaaggttgactcat 352  Q
    ||||||||||||||||||||||||||||||  |||||||| |||||||||||||||||||||||||||||||    
T  26608179 tttattaagaataatgatatagttagttaggatactagttcagttactatataagtcacaaggttgactcat 26608108  T

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Target: chr1 (Bit Score: 52; Significance: 1e-20; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 283 - 350
Target Start/End: Complemental strand, 20225661 - 20225594
Alignment:
Q  283 tattaagaataatgatatagttagttagagtactagtttagttactatataagtcacaaggttgactc 350  Q
    ||||||||||||||||||||||||||||   ||||||||||||||||||||||||||| |||||||||    
T  20225661 tattaagaataatgatatagttagttaggacactagtttagttactatataagtcacatggttgactc 20225594  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 284 - 349
Target Start/End: Complemental strand, 20227018 - 20226953
Alignment:
Q  284 attaagaataatgatatagttagttagagtactagtttagttactatataagtcacaaggttgact 349  Q
    ||||||||||||||||||||||| |||   ||||||||||||||||||||||||| | ||||||||    
T  20227018 attaagaataatgatatagttagctaggacactagtttagttactatataagtcatatggttgact 20226953  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 301 - 354
Target Start/End: Original strand, 16385581 - 16385633
Alignment:
Q  301 agttagttagagtactagtttagttactatataagtcacaaggttgactcattt 354  Q
    |||||||||| ||||||||||||| ||| |||||||||||| ||||||||||||    
T  16385581 agttagttagggtactagtttagtcactgtataagtcacaa-gttgactcattt 16385633  T

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Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 283 - 354
Target Start/End: Complemental strand, 9664802 - 9664731
Alignment:
Q  283 tattaagaataatgatatagttagttagagtactagtttagttactatataagtcacaaggttgactcattt 354  Q
    |||||||||| |||||||||||| ||||   ||||||||||||||||||||||||||| |||||||||||||    
T  9664802 tattaagaatgatgatatagttaattaggacactagtttagttactatataagtcacatggttgactcattt 9664731  T

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Target: chr6; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 283 - 354
Target Start/End: Original strand, 787267 - 787338
Alignment:
Q  283 tattaagaataatgatatagttagttagagtactagtttagttactatataagtcacaaggttgactcattt 354  Q
    |||||||||||||||||||| |||||||   ||||||||||||||||||||||||| | | |||||||||||    
T  787267 tattaagaataatgatataggtagttaggacactagtttagttactatataagtcatatgattgactcattt 787338  T

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Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 283 - 333
Target Start/End: Original strand, 3074909 - 3074959
Alignment:
Q  283 tattaagaataatgatatagttagttagagtactagtttagttactatata 333  Q
    ||||||||||||||||||||||||||||   ||||||||||||||||||||    
T  3074909 tattaagaataatgatatagttagttaggacactagtttagttactatata 3074959  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 301 - 354
Target Start/End: Original strand, 2576998 - 2577050
Alignment:
Q  301 agttagttagagtactagtttagttactatataagtcacaaggttgactcattt 354  Q
    |||||||||| |||||||| |||| |||||||||||||||| ||||||||||||    
T  2576998 agttagttagggtactagtatagtcactatataagtcacaa-gttgactcattt 2577050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 301 - 342
Target Start/End: Original strand, 26389192 - 26389233
Alignment:
Q  301 agttagttagagtactagtttagttactatataagtcacaag 342  Q
    |||||||||| ||||||||||||| |||||||||||||||||    
T  26389192 agttagttagtgtactagtttagtcactatataagtcacaag 26389233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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