View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5875_low_23 (Length: 352)

Name: NF5875_low_23
Description: NF5875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5875_low_23
NF5875_low_23
[»] chr8 (33 HSPs)
chr8 (92-215)||(3085799-3085922)
chr8 (92-211)||(39512883-39513002)
chr8 (92-215)||(16939944-16940067)
chr8 (92-215)||(34892201-34892324)
chr8 (92-215)||(35206327-35206450)
chr8 (92-215)||(37656194-37656317)
chr8 (92-215)||(43520450-43520573)
chr8 (93-215)||(38133815-38133937)
chr8 (92-215)||(13782517-13782640)
chr8 (92-212)||(36595614-36595733)
chr8 (92-215)||(39208087-39208210)
chr8 (92-210)||(45410391-45410509)
chr8 (93-215)||(22961175-22961297)
chr8 (92-215)||(41471374-41471502)
chr8 (18-94)||(13175309-13175385)
chr8 (101-168)||(35206097-35206164)
chr8 (99-215)||(40741558-40741665)
chr8 (101-215)||(7121255-7121360)
chr8 (101-215)||(16939734-16939839)
chr8 (101-215)||(39512675-39512780)
chr8 (101-215)||(41471625-41471730)
chr8 (101-206)||(43520240-43520335)
chr8 (105-215)||(22960970-22961071)
chr8 (101-215)||(36595387-36595492)
chr8 (101-168)||(3086077-3086144)
chr8 (101-168)||(34892465-34892532)
chr8 (101-162)||(37656465-37656526)
chr8 (166-210)||(36345677-36345721)
chr8 (167-215)||(13782745-13782794)
chr8 (131-179)||(3641796-3641844)
chr8 (141-179)||(7121517-7121555)
chr8 (92-126)||(36345641-36345675)
chr8 (311-343)||(13163320-13163352)
[»] scaffold0217 (1 HSPs)
scaffold0217 (92-215)||(8984-9107)
[»] chr7 (15 HSPs)
chr7 (92-215)||(11886266-11886389)
chr7 (92-214)||(13645010-13645132)
chr7 (92-215)||(30846490-30846613)
chr7 (92-215)||(48001043-48001166)
chr7 (92-215)||(14102017-14102139)
chr7 (92-215)||(14412034-14412156)
chr7 (92-162)||(19073032-19073102)
chr7 (102-215)||(11886511-11886615)
chr7 (101-215)||(30846281-30846386)
chr7 (164-215)||(19072719-19072770)
chr7 (101-179)||(2526669-2526747)
chr7 (101-215)||(14101785-14101894)
chr7 (101-215)||(14411802-14411911)
chr7 (101-206)||(19073217-19073312)
chr7 (167-215)||(13644839-13644888)
[»] chr4 (19 HSPs)
chr4 (92-215)||(11566135-11566258)
chr4 (92-215)||(37295876-37295999)
chr4 (92-215)||(37856115-37856238)
chr4 (92-215)||(48807054-48807177)
chr4 (92-210)||(28234954-28235072)
chr4 (92-194)||(7088366-7088468)
chr4 (92-210)||(16472952-16473070)
chr4 (92-186)||(43176011-43176105)
chr4 (101-215)||(48806843-48806948)
chr4 (101-168)||(43176273-43176340)
chr4 (104-168)||(7088173-7088237)
chr4 (101-215)||(37856360-37856464)
chr4 (101-168)||(2449298-2449365)
chr4 (167-206)||(6092382-6092421)
chr4 (131-179)||(43493027-43493075)
chr4 (167-206)||(2449354-2449393)
chr4 (174-215)||(43176206-43176248)
chr4 (101-141)||(6092433-6092473)
chr4 (131-179)||(53536753-53536801)
[»] chr3 (23 HSPs)
chr3 (92-215)||(20484916-20485039)
chr3 (92-212)||(45075631-45075751)
chr3 (92-215)||(7941674-7941797)
chr3 (92-215)||(11269952-11270075)
chr3 (92-215)||(32743463-32743586)
chr3 (92-215)||(4274617-4274740)
chr3 (92-215)||(39999247-39999370)
chr3 (92-210)||(4331122-4331240)
chr3 (92-213)||(26494167-26494291)
chr3 (92-215)||(32592496-32592619)
chr3 (92-215)||(19842784-19842907)
chr3 (111-215)||(10659098-10659202)
chr3 (101-215)||(4274411-4274516)
chr3 (101-215)||(32592724-32592829)
chr3 (101-215)||(30294551-30294656)
chr3 (101-206)||(45075870-45075965)
chr3 (101-215)||(7941464-7941569)
chr3 (101-215)||(20485143-20485248)
chr3 (101-162)||(19843057-19843118)
chr3 (101-215)||(26493939-26494044)
chr3 (101-168)||(31889618-31889685)
chr3 (118-179)||(31890103-31890164)
chr3 (131-179)||(34722375-34722423)
[»] chr2 (21 HSPs)
chr2 (92-215)||(14002775-14002898)
chr2 (92-215)||(23265910-23266033)
chr2 (92-215)||(2271407-2271530)
chr2 (92-210)||(23260904-23261022)
chr2 (92-214)||(29407536-29407658)
chr2 (92-210)||(37321808-37321926)
chr2 (90-209)||(6232894-6233013)
chr2 (92-210)||(40156792-40156910)
chr2 (153-215)||(28138862-28138924)
chr2 (101-206)||(1729129-1729224)
chr2 (101-168)||(28139174-28139241)
chr2 (101-162)||(29407328-29407389)
chr2 (101-215)||(2271198-2271303)
chr2 (101-215)||(23260698-23260803)
chr2 (92-161)||(28138945-28139013)
chr2 (153-215)||(14003002-14003065)
chr2 (101-168)||(37294683-37294750)
chr2 (167-215)||(23265760-23265809)
chr2 (118-180)||(29193775-29193837)
chr2 (118-180)||(44553152-44553214)
chr2 (123-179)||(37893266-37893322)
[»] chr1 (11 HSPs)
chr1 (92-215)||(5329681-5329804)
chr1 (92-215)||(21700158-21700281)
chr1 (92-215)||(51461339-51461462)
chr1 (92-215)||(42290552-42290674)
chr1 (95-213)||(12627805-12627923)
chr1 (92-215)||(7943224-7943347)
chr1 (101-215)||(12627574-12627678)
chr1 (101-215)||(5329453-5329558)
chr1 (101-215)||(51461566-51461672)
chr1 (101-206)||(41909290-41909385)
chr1 (92-127)||(41909517-41909552)
[»] chr5 (12 HSPs)
chr5 (92-215)||(35282062-35282185)
chr5 (92-215)||(41622431-41622554)
chr5 (92-215)||(20743655-20743777)
chr5 (92-215)||(35671365-35671488)
chr5 (92-215)||(2170249-2170360)
chr5 (101-168)||(41622696-41622763)
chr5 (107-215)||(30192775-30192874)
chr5 (101-206)||(2170042-2170138)
chr5 (101-215)||(35671673-35671777)
chr5 (101-215)||(20743448-20743553)
chr5 (92-127)||(35671514-35671549)
chr5 (131-179)||(30966240-30966288)
[»] chr6 (9 HSPs)
chr6 (92-210)||(32396319-32396437)
chr6 (92-215)||(11159094-11159217)
chr6 (92-210)||(17338447-17338565)
chr6 (92-209)||(26350514-26350631)
chr6 (92-215)||(17338231-17338345)
chr6 (101-215)||(11158885-11158990)
chr6 (118-180)||(22209485-22209547)
chr6 (173-215)||(35096921-35096963)
chr6 (131-179)||(15888674-15888722)
[»] scaffold0019 (3 HSPs)
scaffold0019 (92-215)||(127774-127897)
scaffold0019 (101-168)||(128067-128134)
scaffold0019 (174-215)||(128000-128042)
[»] scaffold1379 (1 HSPs)
scaffold1379 (131-179)||(308-356)


Alignment Details
Target: chr8 (Bit Score: 108; Significance: 3e-54; HSPs: 33)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 92 - 215
Target Start/End: Complemental strand, 3085922 - 3085799
Alignment:
Q  92 aaatattagtataaagtaataatagattagtcaaacctatgaataatgacagacatcattaaaattaattactaataattacaaatataattattctatc 191  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| | |||||||||||||||||||||||||||||||||||||||    
T  3085922 aaatattagtataaagtaataataggttagtcaaacctatgaataatgacaaacatcaatgaaattaattactaataattacaaatataattattctatc 3085823  T
Q  192 atttataacgtttttgttgttgca 215  Q
    ||||||||||||||||||||||||    
T  3085822 atttataacgtttttgttgttgca 3085799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 92 - 211
Target Start/End: Original strand, 39512883 - 39513002
Alignment:
Q  92 aaatattagtataaagtaataatagattagtcaaacctatgaataatgacagacatcattaaaattaattactaataattacaaatataattattctatc 191  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||    
T  39512883 aaatattagtataaagtaataataggttagtcaaacctatgaataatgacagacatcaatgaaattaattactaataattacaaatataattattctatc 39512982  T
Q  192 atttataacgtttttgttgt 211  Q
    |||| |||||||||||||||    
T  39512983 atttgtaacgtttttgttgt 39513002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 92 - 215
Target Start/End: Original strand, 16939944 - 16940067
Alignment:
Q  92 aaatattagtataaagtaataatagattagtcaaacctatgaataatgacagacatcattaaaattaattactaataattacaaatataattattctatc 191  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| ||||    
T  16939944 aaatattagtataaagtaataataggttagtcaaacctatgaataatgacagacatcaatgaaattaattactaataattacaaatataattattttatc 16940043  T
Q  192 atttataacgtttttgttgttgca 215  Q
    |||| |||| ||||||||||||||    
T  16940044 atttgtaacatttttgttgttgca 16940067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 92 - 215
Target Start/End: Complemental strand, 34892324 - 34892201
Alignment:
Q  92 aaatattagtataaagtaataatagattagtcaaacctatgaataatgacagacatcattaaaattaattactaataattacaaatataattattctatc 191  Q
    ||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||     
T  34892324 aaatattagtataaagtaataataggttggtcaaacctatgaataatgacagacatcaatgaaattaattactaataattacaaatataattattctatt 34892225  T
Q  192 atttataacgtttttgttgttgca 215  Q
    |||| |||||||||||||||||||    
T  34892224 atttgtaacgtttttgttgttgca 34892201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 92 - 215
Target Start/End: Original strand, 35206327 - 35206450
Alignment:
Q  92 aaatattagtataaagtaataatagattagtcaaacctatgaataatgacagacatcattaaaattaattactaataattacaaatataattattctatc 191  Q
    |||||||| |||||||||||||||| |||||||||| ||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  35206327 aaatattaatataaagtaataataggttagtcaaacttataaataatgacagacatcaataaaattaattactaataattacaaatataattattctatc 35206426  T
Q  192 atttataacgtttttgttgttgca 215  Q
    |||| |||||||||||||||||||    
T  35206427 atttgtaacgtttttgttgttgca 35206450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 92 - 215
Target Start/End: Complemental strand, 37656317 - 37656194
Alignment:
Q  92 aaatattagtataaagtaataatagattagtcaaacctatgaataatgacagacatcattaaaattaattactaataattacaaatataattattctatc 191  Q
    ||||||||||||||||||||||||| ||| ||||||||||||||||| |||||||||| | |||||||||||||||||||||||||||||||||||||||    
T  37656317 aaatattagtataaagtaataataggttaatcaaacctatgaataattacagacatcaatgaaattaattactaataattacaaatataattattctatc 37656218  T
Q  192 atttataacgtttttgttgttgca 215  Q
    |||| |||||||||||||||||||    
T  37656217 atttgtaacgtttttgttgttgca 37656194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 92 - 215
Target Start/End: Original strand, 43520450 - 43520573
Alignment:
Q  92 aaatattagtataaagtaataatagattagtcaaacctatgaataatgacagacatcattaaaattaattactaataattacaaatataattattctatc 191  Q
    ||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| | |||||||||| ||||||||||||||||||||||||||||    
T  43520450 aaatattagtataaagtaataataggtcagtcaaacctatgaataatgacagacatcaatgaaattaattaataataattacaaatataattattctatc 43520549  T
Q  192 atttataacgtttttgttgttgca 215  Q
    |||| |||||||||||||||||||    
T  43520550 atttttaacgtttttgttgttgca 43520573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 93 - 215
Target Start/End: Original strand, 38133815 - 38133937
Alignment:
Q  93 aatattagtataaagtaataatagattagtcaaacctatgaataatgacagacatcattaaaattaattactaataattacaaatataattattctatca 192  Q
    |||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| | |||||| |||||||||||||||||||||||||||||||||    
T  38133815 aatattagtataaagtaataataggttagtcaaacatatgaataatgacagacatcaatgaaattagttactaataattacaaatataattattctatca 38133914  T
Q  193 tttataacgtttttgttgttgca 215  Q
    ||| |||||||||||||||||||    
T  38133915 tttgtaacgtttttgttgttgca 38133937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 92 - 215
Target Start/End: Complemental strand, 13782640 - 13782517
Alignment:
Q  92 aaatattagtataaagtaataatagattagtcaaacctatgaataatgacagacatcattaaaattaattactaataattacaaatataattattctatc 191  Q
    |||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| ||||    
T  13782640 aaatattattataaagtaataataggttagtcaaacctatgaataatgacagacatcaatgaaattaattactaataattacaaatataattattatatc 13782541  T
Q  192 atttataacgtttttgttgttgca 215  Q
     ||| |||||||||||||||||||    
T  13782540 gtttgtaacgtttttgttgttgca 13782517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 92 - 212
Target Start/End: Original strand, 36595614 - 36595733
Alignment:
Q  92 aaatattagtataaagtaataatagattagtcaaacctatgaataatgacagacatcattaaaattaattactaataattacaaatataattattctatc 191  Q
    ||||||||||||||||||||||||| |||||||||| |||||||| ||||| |||||| | |||||||||||||||||||||||||||||||||||||||    
T  36595614 aaatattagtataaagtaataataggttagtcaaacatatgaata-tgacatacatcaatgaaattaattactaataattacaaatataattattctatc 36595712  T
Q  192 atttataacgtttttgttgtt 212  Q
    |||| ||||||||||||||||    
T  36595713 atttgtaacgtttttgttgtt 36595733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 92 - 215
Target Start/End: Original strand, 39208087 - 39208210
Alignment:
Q  92 aaatattagtataaagtaataatagattagtcaaacctatgaataatgacagacatcattaaaattaattactaataattacaaatataattattctatc 191  Q
    ||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| | ||||| ||| |||||||||| |||| |||||||||||||    
T  39208087 aaatattagtataaagtaataataggttagtcaaacatatgaataatgacagacatcaatgaaattgattgctaataattataaatttaattattctatc 39208186  T
Q  192 atttataacgtttttgttgttgca 215  Q
    |||| |||||||||||||||||||    
T  39208187 atttgtaacgtttttgttgttgca 39208210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 92 - 210
Target Start/End: Complemental strand, 45410509 - 45410391
Alignment:
Q  92 aaatattagtataaagtaataatagattagtcaaacctatgaataatgacagacatcattaaaattaattactaataattacaaatataattattctatc 191  Q
    ||||||||||||||||||| ||| | ||||||||| ||||||||||||| |||||||| | |||||||||||||||||||||||||||||||||||||||    
T  45410509 aaatattagtataaagtaaaaatgggttagtcaaatctatgaataatgatagacatcaatgaaattaattactaataattacaaatataattattctatc 45410410  T
Q  192 atttataacgtttttgttg 210  Q
    ||||  |||||||||||||    
T  45410409 atttgaaacgtttttgttg 45410391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 93 - 215
Target Start/End: Original strand, 22961175 - 22961297
Alignment:
Q  93 aatattagtataaagtaataatagattagtcaaacctatgaataatgacagacatcattaaaattaattactaataattacaaatataattattctatca 192  Q
    |||||||||||||||||||||||  ||||||||| |||||||||||||| ||||||| | |||||||||| ||||||||||||||||| |||||||||||    
T  22961175 aatattagtataaagtaataataagttagtcaaatctatgaataatgacggacatcaatgaaattaattattaataattacaaatatatttattctatca 22961274  T
Q  193 tttataacgtttttgttgttgca 215  Q
    ||| |||| ||| ||||||||||    
T  22961275 tttgtaacatttctgttgttgca 22961297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 92 - 215
Target Start/End: Complemental strand, 41471502 - 41471374
Alignment:
Q  92 aaatattagtataaagtaataatagattagtcaaacctatgaataatgacagacatc-----attaaaattaattactaataattacaaatataattatt 186  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||     | | |||| ||||| |||||||||||||||||||||||    
T  41471502 aaatattagtataaagtaataataggttagtcaaacctatgaataatgacaaacatcaatgaaatgaaatgaattaataataattacaaatataattatt 41471403  T
Q  187 ctatcatttataacgtttttgttgttgca 215  Q
    ||||| ||| |||||||||||||||||||    
T  41471402 ctatcgtttgtaacgtttttgttgttgca 41471374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 13175385 - 13175309
Alignment:
Q  18 tgtttttcttttatgcatttggaaattttgggttttccaaaacttcaaacatcaaaatcacatgaaacccaattaaa 94  Q
    |||||||||||||||||||||| | ||||||||||| |||||||||||||| |||||||||||||||||||||||||    
T  13175385 tgtttttcttttatgcatttgggatttttgggtttttcaaaacttcaaacaacaaaatcacatgaaacccaattaaa 13175309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 101 - 168
Target Start/End: Original strand, 35206097 - 35206164
Alignment:
Q  101 tataaagtaataatagattagtcaaacctatgaataatgacagacatcattaaaattaattactaata 168  Q
    ||||||||||| |||| |||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  35206097 tataaagtaattataggttagtcaaacctatgaataatgacagacatcaataaaattaattactaata 35206164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 99 - 215
Target Start/End: Original strand, 40741558 - 40741665
Alignment:
Q  99 agtataaagtaataatagattagtcaaacctatgaataatgacagacatcattaaaattaattactaataattacaaatataattattctatcatttata 198  Q
    ||||||||||||||||||  ||||||||||||||||||||||||||||||| | ||||          ||||||||||||||||||||||||||||||||    
T  40741558 agtataaagtaataatagggtagtcaaacctatgaataatgacagacatcaatgaaat----------taattacaaatataattattctatcatttata 40741647  T
Q  199 acg-tttttgttgttgca 215  Q
    | | ||||||||||||||    
T  40741648 atgttttttgttgttgca 40741665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 101 - 215
Target Start/End: Original strand, 7121255 - 7121360
Alignment:
Q  101 tataaagtaataatagattagtcaaacctatgaataatgacagacatcattaaaattaattactaataattacaaatataattattctatcatttataac 200  Q
    |||||||||||||||| ||||||||||||||||||||||||| |||||| | ||||          |||||||||||||||||||||||||||||||||     
T  7121255 tataaagtaataataggttagtcaaacctatgaataatgacatacatcaatgaaat----------taattacaaatataattattctatcatttataat 7121344  T
Q  201 g-tttttgttgttgca 215  Q
    | ||||||||||||||    
T  7121345 gttttttgttgttgca 7121360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 101 - 215
Target Start/End: Original strand, 16939734 - 16939839
Alignment:
Q  101 tataaagtaataatagattagtcaaacctatgaataatgacagacatcattaaaattaattactaataattacaaatataattattctatcatttataa- 199  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||| | ||||          |||||||||||||||||||||||||||||||||     
T  16939734 tataaagtaataataggttagtcaaacctatgaataatgacagacatcactgaaat----------taattacaaatataattattctatcatttataat 16939823  T
Q  200 cgtttttgttgttgca 215  Q
      ||||||||||||||    
T  16939824 attttttgttgttgca 16939839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 101 - 215
Target Start/End: Original strand, 39512675 - 39512780
Alignment:
Q  101 tataaagtaataatagattagtcaaacctatgaataatgacagacatcattaaaattaattactaataattacaaatataattattctatcatttataac 200  Q
    |||||||||||||||| |||||||||||||||||| ||||||||||||| | ||||          |||||||||||||||||||||||||||||||||     
T  39512675 tataaagtaataataggttagtcaaacctatgaatcatgacagacatcaatgaaat----------taattacaaatataattattctatcatttataat 39512764  T
Q  201 g-tttttgttgttgca 215  Q
    | ||||||||||||||    
T  39512765 gttttttgttgttgca 39512780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 101 - 215
Target Start/End: Complemental strand, 41471730 - 41471625
Alignment:
Q  101 tataaagtaataatagattagtcaaacctatgaataatgacagacatcattaaaattaattactaataattacaaatataattattctatcatttataac 200  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||| | |||||||          |||||||||||||||||||||||| |||||     
T  41471730 tataaagtaataataggttagtcaaacctatgaataatgacagacatcaatgaaattaa----------ttacaaatataattattctatcatatataat 41471641  T
Q  201 g-tttttgttgttgca 215  Q
    | ||||||||||||||    
T  41471640 gttttttgttgttgca 41471625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 101 - 206
Target Start/End: Original strand, 43520240 - 43520335
Alignment:
Q  101 tataaagtaataatagattagtcaaacctatgaataatgacagacatcattaaaattaattactaataattacaaatataattattctatcatttataac 200  Q
    |||||||||||||||| |||||||||||||| ||||||||||||||||| | ||||          |||||||||||||||||||||||||||||||||     
T  43520240 tataaagtaataataggttagtcaaacctattaataatgacagacatcaatgaaat----------taattacaaatataattattctatcatttataat 43520329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 105 - 215
Target Start/End: Original strand, 22960970 - 22961071
Alignment:
Q  105 aagtaataatagattagtcaaacctatgaataatgacagacatcattaaaattaattactaataattacaaatataattattctatcatttataacg-tt 203  Q
    |||||||||||| |||||||||||||||||||||||||||||||| | ||||          |||||||||||| |||||||||||||||||||| | ||    
T  22960970 aagtaataataggttagtcaaacctatgaataatgacagacatcaatgaaat----------taattacaaatacaattattctatcatttataatgttt 22961059  T
Q  204 tttgttgttgca 215  Q
    ||||||||||||    
T  22961060 tttgttgttgca 22961071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 101 - 215
Target Start/End: Original strand, 36595387 - 36595492
Alignment:
Q  101 tataaagtaataatagattagtcaaacctatgaataatgacagacatcattaaaattaattactaataattacaaatataattattctatcatttataac 200  Q
    |||||||||||||||| ||||||||||||||||||||||| |||||||| | ||||          ||||||||||||||||||||||||| |||||||     
T  36595387 tataaagtaataataggttagtcaaacctatgaataatgagagacatcaatgaaat----------taattacaaatataattattctatcgtttataat 36595476  T
Q  201 g-tttttgttgttgca 215  Q
    | ||||||||||||||    
T  36595477 gttttttgttgttgca 36595492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 101 - 168
Target Start/End: Complemental strand, 3086144 - 3086077
Alignment:
Q  101 tataaagtaataatagattagtcaaacctatgaataatgacagacatcattaaaattaattactaata 168  Q
    |||||||||||||||| | |||||||| ||||||||||||||||||||| ||||||||||||| ||||    
T  3086144 tataaagtaataataggtcagtcaaacatatgaataatgacagacatcaataaaattaattacaaata 3086077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 101 - 168
Target Start/End: Complemental strand, 34892532 - 34892465
Alignment:
Q  101 tataaagtaataatagattagtcaaacctatgaataatgacagacatcattaaaattaattactaata 168  Q
    |||||||||||||||  ||||||||||||||||||||||||| |||||| ||||||||||||| ||||    
T  34892532 tataaagtaataataagttagtcaaacctatgaataatgacatacatcaataaaattaattacaaata 34892465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 101 - 162
Target Start/End: Complemental strand, 37656526 - 37656465
Alignment:
Q  101 tataaagtaataatagattagtcaaacctatgaataatgacagacatcattaaaattaatta 162  Q
    |||||||||||||||| |||||||||||||| ||||||||||||||||| | ||||||||||    
T  37656526 tataaagtaataataggttagtcaaacctataaataatgacagacatcaatgaaattaatta 37656465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 166 - 210
Target Start/End: Original strand, 36345677 - 36345721
Alignment:
Q  166 ataattacaaatataattattctatcatttataacgtttttgttg 210  Q
    |||||||||||||||||||||||||||||| ||||||||||||||    
T  36345677 ataattacaaatataattattctatcatttgtaacgtttttgttg 36345721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 167 - 215
Target Start/End: Complemental strand, 13782794 - 13782745
Alignment:
Q  167 taattacaaatataattattctatcatttataacg-tttttgttgttgca 215  Q
    ||||||||||||||||||||||||||||||||| | ||||||||||||||    
T  13782794 taattacaaatataattattctatcatttataatgttttttgttgttgca 13782745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 131 - 179
Target Start/End: Complemental strand, 3641844 - 3641796
Alignment:
Q  131 tgaataatgacagacatcattaaaattaattactaataattacaaatat 179  Q
    |||||||||| |||||||| | ||||||||||| |||||||||||||||    
T  3641844 tgaataatgatagacatcaatgaaattaattacaaataattacaaatat 3641796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 141 - 179
Target Start/End: Original strand, 7121517 - 7121555
Alignment:
Q  141 cagacatcattaaaattaattactaataattacaaatat 179  Q
    ||||||||| | |||||||||||||||||||||||||||    
T  7121517 cagacatcaatgaaattaattactaataattacaaatat 7121555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 92 - 126
Target Start/End: Original strand, 36345641 - 36345675
Alignment:
Q  92 aaatattagtataaagtaataatagattagtcaaa 126  Q
    ||||||||||||||||||||||||| |||||||||    
T  36345641 aaatattagtataaagtaataataggttagtcaaa 36345675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 311 - 343
Target Start/End: Original strand, 13163320 - 13163352
Alignment:
Q  311 cttaacgaatcctccataaattagccttcttct 343  Q
    |||||||||||||||||||||||||| ||||||    
T  13163320 cttaacgaatcctccataaattagccatcttct 13163352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0217 (Bit Score: 104; Significance: 8e-52; HSPs: 1)
Name: scaffold0217
Description:

Target: scaffold0217; HSP #1
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 92 - 215
Target Start/End: Complemental strand, 9107 - 8984
Alignment:
Q  92 aaatattagtataaagtaataatagattagtcaaacctatgaataatgacagacatcattaaaattaattactaataattacaaatataattattctatc 191  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||    
T  9107 aaatattagtataaagtaataataggttagtcaaacctatgaataatgacagacatcaatgaaattaattactaataattacaaatataattattctatc 9008  T
Q  192 atttataacgtttttgttgttgca 215  Q
    |||| ||||||||||||| |||||    
T  9007 atttgtaacgtttttgtttttgca 8984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 104; Significance: 8e-52; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 92 - 215
Target Start/End: Complemental strand, 11886389 - 11886266
Alignment:
Q  92 aaatattagtataaagtaataatagattagtcaaacctatgaataatgacagacatcattaaaattaattactaataattacaaatataattattctatc 191  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |||||||    
T  11886389 aaatattagtataaagtaataataggttagtcaaacctatgaataatgacagacatcaatgaaattaattactaataattacaaatataattgttctatc 11886290  T
Q  192 atttataacgtttttgttgttgca 215  Q
    |||| |||||||||||||||||||    
T  11886289 atttgtaacgtttttgttgttgca 11886266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 92 - 214
Target Start/End: Original strand, 13645010 - 13645132
Alignment:
Q  92 aaatattagtataaagtaataatagattagtcaaacctatgaataatgacagacatcattaaaattaattactaataattacaaatataattattctatc 191  Q
    |||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||    
T  13645010 aaatataagtataaagtaataataggttagtcaaacctatgaataatgacagacatcaatgaaattaattactaataattacaaatataattattctatc 13645109  T
Q  192 atttataacgtttttgttgttgc 214  Q
    |||| ||||||||||||||||||    
T  13645110 atttgtaacgtttttgttgttgc 13645132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 92 - 215
Target Start/End: Original strand, 30846490 - 30846613
Alignment:
Q  92 aaatattagtataaagtaataatagattagtcaaacctatgaataatgacagacatcattaaaattaattactaataattacaaatataattattctatc 191  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| |||||||||    
T  30846490 aaatattagtataaagtaataataggttagtcaaacctatgaataatgacagacatcaatgaaattaattactaataattacaaatataactattctatc 30846589  T
Q  192 atttataacgtttttgttgttgca 215  Q
    |||| |||||||| | ||||||||    
T  30846590 atttgtaacgtttcttttgttgca 30846613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 92 - 215
Target Start/End: Original strand, 48001043 - 48001166
Alignment:
Q  92 aaatattagtataaagtaataatagattagtcaaacctatgaataatgacagacatcattaaaattaattactaataattacaaatataattattctatc 191  Q
    ||||||||||||||||||| ||||| ||||||||| ||||||||||||| |||||||| | |||||||||||||||||||||||||||||||||||||||    
T  48001043 aaatattagtataaagtaagaataggttagtcaaatctatgaataatgaaagacatcaatgaaattaattactaataattacaaatataattattctatc 48001142  T
Q  192 atttataacgtttttgttgttgca 215  Q
    |||| |||||||||| ||||||||    
T  48001143 atttgtaacgtttttattgttgca 48001166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 92 - 215
Target Start/End: Original strand, 14102017 - 14102139
Alignment:
Q  92 aaatattagtataaagtaataatagattagtcaaacctatgaataatgacagacatcattaaaattaattactaataattacaaatataattattctatc 191  Q
    ||||||||||||||||||||||||  |||||||||||||| |||||||| |||||||| | |||||||||||||||||||||||||||||||||||||||    
T  14102017 aaatattagtataaagtaataatatgttagtcaaacctat-aataatgagagacatcaatgaaattaattactaataattacaaatataattattctatc 14102115  T
Q  192 atttataacgtttttgttgttgca 215  Q
    | || |||||||||||||||||||    
T  14102116 aattgtaacgtttttgttgttgca 14102139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 92 - 215
Target Start/End: Original strand, 14412034 - 14412156
Alignment:
Q  92 aaatattagtataaagtaataatagattagtcaaacctatgaataatgacagacatcattaaaattaattactaataattacaaatataattattctatc 191  Q
    ||||||||||||||||||||||||  |||||||||||||| |||||||| |||||||| | |||||||||||||||||||||||||||||||||||||||    
T  14412034 aaatattagtataaagtaataatatgttagtcaaacctat-aataatgagagacatcaatgaaattaattactaataattacaaatataattattctatc 14412132  T
Q  192 atttataacgtttttgttgttgca 215  Q
    | || |||||||||||||||||||    
T  14412133 aattgtaacgtttttgttgttgca 14412156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 92 - 162
Target Start/End: Complemental strand, 19073102 - 19073032
Alignment:
Q  92 aaatattagtataaagtaataatagattagtcaaacctatgaataatgacagacatcattaaaattaatta 162  Q
    ||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| | ||||||||||    
T  19073102 aaatattagtataaagtaataataggtcagtcaaacctatgaataatgacagacatcaatgaaattaatta 19073032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 102 - 215
Target Start/End: Complemental strand, 11886615 - 11886511
Alignment:
Q  102 ataaagtaataatagattagtcaaacctatgaataatgacagacatcattaaaattaattactaataattacaaatataattattctatcatttataacg 201  Q
    ||||||||||||||| ||||||||| |||||||||||||||||||||| | |||||||          |||||||||||||||||||||||||||||| |    
T  11886615 ataaagtaataataggttagtcaaatctatgaataatgacagacatcaatgaaattaa----------ttacaaatataattattctatcatttataatg 11886526  T
Q  202 -tttttgttgttgca 215  Q
     ||||||||||||||    
T  11886525 ttttttgttgttgca 11886511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 101 - 215
Target Start/End: Original strand, 30846281 - 30846386
Alignment:
Q  101 tataaagtaataatagattagtcaaacctatgaataatgacagacatcattaaaattaattactaataattacaaatataattattctatcatttataa- 199  Q
    |||||| ||||||||| |||||||||||||||||||||||||||||||| | ||||          |||||||||||||||||||||||||||||||||     
T  30846281 tataaattaataataggttagtcaaacctatgaataatgacagacatcaatgaaat----------taattacaaatataattattctatcatttataat 30846370  T
Q  200 cgtttttgttgttgca 215  Q
      ||||||||||||||    
T  30846371 attttttgttgttgca 30846386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 164 - 215
Target Start/End: Complemental strand, 19072770 - 19072719
Alignment:
Q  164 taataattacaaatataattattctatcatttataacgtttttgttgttgca 215  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  19072770 taataattacaaatataattattctatcatttgtaacgtttttgttgttgca 19072719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 101 - 179
Target Start/End: Complemental strand, 2526747 - 2526669
Alignment:
Q  101 tataaagtaataatagattagtcaaacctatgaataatgacagacatcattaaaattaattactaataattacaaatat 179  Q
    |||||||||||||||| ||||| ||||||||||||||||| |||||| | | ||||||||||  |||||||||||||||    
T  2526747 tataaagtaataataggttagtgaaacctatgaataatgatagacattaatgaaattaattataaataattacaaatat 2526669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 101 - 215
Target Start/End: Original strand, 14101785 - 14101894
Alignment:
Q  101 tataaagtaataatagattagtcaaac----ctatgaataatgacagacatcattaaaattaattactaataattacaaatataattattctatcattta 196  Q
    |||||||||||||||| ||||||||||    |||||||||||||||||||||| | ||||          ||||||||||||||||||||||||||||||    
T  14101785 tataaagtaataataggttagtcaaacatacctatgaataatgacagacatcaatgaaat----------taattacaaatataattattctatcattta 14101874  T
Q  197 taacg-tttttgttgttgca 215  Q
    ||| | ||||||||||||||    
T  14101875 taatgttttttgttgttgca 14101894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 101 - 215
Target Start/End: Original strand, 14411802 - 14411911
Alignment:
Q  101 tataaagtaataatagattagtcaaac----ctatgaataatgacagacatcattaaaattaattactaataattacaaatataattattctatcattta 196  Q
    |||||||||||||||| ||||||||||    |||||||||||||||||||||| | ||||          ||||||||||||||||||||||||||||||    
T  14411802 tataaagtaataataggttagtcaaacatacctatgaataatgacagacatcaatgaaat----------taattacaaatataattattctatcattta 14411891  T
Q  197 taacg-tttttgttgttgca 215  Q
    ||| | ||||||||||||||    
T  14411892 taatgttttttgttgttgca 14411911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 101 - 206
Target Start/End: Complemental strand, 19073312 - 19073217
Alignment:
Q  101 tataaagtaataatagattagtcaaacctatgaataatgacagacatcattaaaattaattactaataattacaaatataattattctatcatttataac 200  Q
    |||||||||||||||| |||||||||||||| |||||||||| |||||| | ||||          |||||| ||||||||||||||||||||||||||     
T  19073312 tataaagtaataataggttagtcaaacctattaataatgacacacatcaatgaaat----------taattataaatataattattctatcatttataat 19073223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 167 - 215
Target Start/End: Original strand, 13644839 - 13644888
Alignment:
Q  167 taattacaaatataattattctatcatttataacg-tttttgttgttgca 215  Q
    ||||||||||||||||||||||||||| ||||| | ||||||||||||||    
T  13644839 taattacaaatataattattctatcatatataatgttttttgttgttgca 13644888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 104; Significance: 8e-52; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 92 - 215
Target Start/End: Complemental strand, 11566258 - 11566135
Alignment:
Q  92 aaatattagtataaagtaataatagattagtcaaacctatgaataatgacagacatcattaaaattaattactaataattacaaatataattattctatc 191  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||    
T  11566258 aaatattagtataaagtaataataggttagtcaaacctatgaataatgacagacatcaatgaaattaattactaataattacaaatataattattctatc 11566159  T
Q  192 atttataacgtttttgttgttgca 215  Q
    |||| |||||||||| ||||||||    
T  11566158 atttgtaacgtttttattgttgca 11566135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 92 - 215
Target Start/End: Original strand, 37295876 - 37295999
Alignment:
Q  92 aaatattagtataaagtaataatagattagtcaaacctatgaataatgacagacatcattaaaattaattactaataattacaaatataattattctatc 191  Q
    |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||    
T  37295876 aaatattaatataaagtaataatagattattcaaacctatgaataatgacagacatcaatgaaattaattactaataattacaaatataattattctatc 37295975  T
Q  192 atttataacgtttttgttgttgca 215  Q
    |||| |||||||||||||||||||    
T  37295976 atttctaacgtttttgttgttgca 37295999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 92 - 215
Target Start/End: Complemental strand, 37856238 - 37856115
Alignment:
Q  92 aaatattagtataaagtaataatagattagtcaaacctatgaataatgacagacatcattaaaattaattactaataattacaaatataattattctatc 191  Q
    ||||| || ||||||| |||||||| ||||||||||||||||||||||||| |||||| | |||||||||||||||||||||||||||||||||||||||    
T  37856238 aaataataatataaagcaataataggttagtcaaacctatgaataatgacatacatcaatgaaattaattactaataattacaaatataattattctatc 37856139  T
Q  192 atttataacgtttttgttgttgca 215  Q
    |||| |||||||||||||||||||    
T  37856138 atttgtaacgtttttgttgttgca 37856115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 92 - 215
Target Start/End: Original strand, 48807054 - 48807177
Alignment:
Q  92 aaatattagtataaagtaataatagattagtcaaacctatgaataatgacagacatcattaaaattaattactaataattacaaatataattattctatc 191  Q
    ||||||||||||||| ||||||||| ||||||||||||||||||||||| |||||||| | |||||||||| ||||||||| ||||||||||||||||||    
T  48807054 aaatattagtataaaataataataggttagtcaaacctatgaataatgatagacatcaatgaaattaattattaataattaaaaatataattattctatc 48807153  T
Q  192 atttataacgtttttgttgttgca 215  Q
    |||| |||||||||||||||||||    
T  48807154 atttgtaacgtttttgttgttgca 48807177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 92 - 210
Target Start/End: Original strand, 28234954 - 28235072
Alignment:
Q  92 aaatattagtataaagtaataatagattagtcaaacctatgaataatgacagacatcattaaaattaattactaataattacaaatataattattctatc 191  Q
    |||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||| | |||||||||||||||||||||||||||||||||||||||    
T  28234954 aaatattagtataaagcaataataggttagtcaaacctatgaataatgatagacatcaatgaaattaattactaataattacaaatataattattctatc 28235053  T
Q  192 atttataacgtttttgttg 210  Q
    ||||  |||||||||||||    
T  28235054 atttgaaacgtttttgttg 28235072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 92 - 194
Target Start/End: Original strand, 7088366 - 7088468
Alignment:
Q  92 aaatattagtataaagtaataatagattagtcaaacctatgaataatgacagacatcattaaaattaattactaataattacaaatataattattctatc 191  Q
    ||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| | | |||||||||| ||||||||||||||||||||||||||||    
T  7088366 aaatattagtataaagtaataataggttagtcaaatctatgaataatgacagacattaatgaaattaattattaataattacaaatataattattctatc 7088465  T
Q  192 att 194  Q
    |||    
T  7088466 att 7088468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 92 - 210
Target Start/End: Original strand, 16472952 - 16473070
Alignment:
Q  92 aaatattagtataaagtaataatagattagtcaaacctatgaataatgacagacatcattaaaattaattactaataattacaaatataattattctatc 191  Q
    |||||||||||||  |||||||||| ||||||||||||| ||||||||| |||||||| | |||||||||||||||||| ||||||||||||||||||||    
T  16472952 aaatattagtatagtgtaataataggttagtcaaacctacgaataatgatagacatcaatgaaattaattactaataatgacaaatataattattctatc 16473051  T
Q  192 atttataacgtttttgttg 210  Q
    |||   |||||||||||||    
T  16473052 attagaaacgtttttgttg 16473070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 92 - 186
Target Start/End: Complemental strand, 43176105 - 43176011
Alignment:
Q  92 aaatattagtataaagtaataatagattagtcaaacctatgaataatgacagacatcattaaaattaattactaataattacaaatataattatt 186  Q
    |||||||||||||||||| |||||| |||||||||| |||||||||||||||| |||| | ||||||||||||||||||||||||||||||||||    
T  43176105 aaatattagtataaagtactaataggttagtcaaacttatgaataatgacagaaatcaatgaaattaattactaataattacaaatataattatt 43176011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 101 - 215
Target Start/End: Original strand, 48806843 - 48806948
Alignment:
Q  101 tataaagtaataatagattagtcaaacctatgaataatgacagacatcattaaaattaattactaataattacaaatataattattctatcatttataac 200  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||| | ||||          |||||||||||||||||||||||||||||||||     
T  48806843 tataaagtaataataggttagtcaaacctatgaataatgacagacatcaatgaaat----------taattacaaatataattattctatcatttataat 48806932  T
Q  201 g-tttttgttgttgca 215  Q
    | ||||||||||||||    
T  48806933 gttttttgttgttgca 48806948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 101 - 168
Target Start/End: Complemental strand, 43176340 - 43176273
Alignment:
Q  101 tataaagtaataatagattagtcaaacctatgaataatgacagacatcattaaaattaattactaata 168  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||| | ||||||||||| ||||    
T  43176340 tataaagtaataataggttagtcaaacctatgaataatgacagacatcaatgaaattaattacaaata 43176273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 104 - 168
Target Start/End: Original strand, 7088173 - 7088237
Alignment:
Q  104 aaagtaataatagattagtcaaacctatgaataatgacagacatcattaaaattaattactaata 168  Q
    ||||||||||||| |||||||||||||||||||||||||||||| | | ||||||||||| ||||    
T  7088173 aaagtaataataggttagtcaaacctatgaataatgacagacattaatgaaattaattacaaata 7088237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 101 - 215
Target Start/End: Complemental strand, 37856464 - 37856360
Alignment:
Q  101 tataaagtaataatagattagtcaaacctatgaataatgacagacatcattaaaattaattactaataattacaaatataattattctatcatttataac 200  Q
    |||||||||||||||| ||| ||||| |||||||||||||||||||||| |||||||||          |||||||||||||||||||||||||||||      
T  37856464 tataaagtaataataggtta-tcaaatctatgaataatgacagacatcaataaaattaa----------ttacaaatataattattctatcatttatatt 37856376  T
Q  201 g-tttttgttgttgca 215  Q
    | ||||||||||||||    
T  37856375 gttttttgttgttgca 37856360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 101 - 168
Target Start/End: Original strand, 2449298 - 2449365
Alignment:
Q  101 tataaagtaataatagattagtcaaacctatgaataatgacagacatcattaaaattaattactaata 168  Q
    |||||| ||||||||| ||||||||| ||||||||||| |||||||| | | ||||||||||| ||||    
T  2449298 tataaaataataataggttagtcaaatctatgaataattacagacattaatgaaattaattacaaata 2449365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 167 - 206
Target Start/End: Complemental strand, 6092421 - 6092382
Alignment:
Q  167 taattacaaatataattattctatcatttataacgttttt 206  Q
    ||||||||||||||||||||||||||||||||| ||||||    
T  6092421 taattacaaatataattattctatcatttataatgttttt 6092382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 131 - 179
Target Start/End: Complemental strand, 43493075 - 43493027
Alignment:
Q  131 tgaataatgacagacatcattaaaattaattactaataattacaaatat 179  Q
    |||||||||| |||||||| | ||||||||||| |||||||||||||||    
T  43493075 tgaataatgatagacatcaatgaaattaattacaaataattacaaatat 43493027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 167 - 206
Target Start/End: Original strand, 2449354 - 2449393
Alignment:
Q  167 taattacaaatataattattctatcatttataacgttttt 206  Q
    |||||||||||||||||||| |||||||||||| ||||||    
T  2449354 taattacaaatataattattatatcatttataatgttttt 2449393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 174 - 215
Target Start/End: Complemental strand, 43176248 - 43176206
Alignment:
Q  174 aaatataattattctatcatttataacg-tttttgttgttgca 215  Q
    |||||||||||||||||||||||||| | ||||||||||||||    
T  43176248 aaatataattattctatcatttataatgttttttgttgttgca 43176206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 101 - 141
Target Start/End: Complemental strand, 6092473 - 6092433
Alignment:
Q  101 tataaagtaataatagattagtcaaacctatgaataatgac 141  Q
    |||||||||||||||| ||||||||| |||| |||||||||    
T  6092473 tataaagtaataataggttagtcaaatctataaataatgac 6092433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 131 - 179
Target Start/End: Original strand, 53536753 - 53536801
Alignment:
Q  131 tgaataatgacagacatcattaaaattaattactaataattacaaatat 179  Q
    |||||||||| |||||||| | ||||||||||| ||||| |||||||||    
T  53536753 tgaataatgatagacatcaatgaaattaattacaaataaatacaaatat 53536801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 104; Significance: 8e-52; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 92 - 215
Target Start/End: Complemental strand, 20485039 - 20484916
Alignment:
Q  92 aaatattagtataaagtaataatagattagtcaaacctatgaataatgacagacatcattaaaattaattactaataattacaaatataattattctatc 191  Q
    ||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||    
T  20485039 aaatattagtataaagtaataattggttagtcaaacctatgaataatgacagacatcaatgaaattaattactaataattacaaatataattattctatc 20484940  T
Q  192 atttataacgtttttgttgttgca 215  Q
    |||| |||||||||||||||||||    
T  20484939 atttgtaacgtttttgttgttgca 20484916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 92 - 212
Target Start/End: Complemental strand, 45075751 - 45075631
Alignment:
Q  92 aaatattagtataaagtaataatagattagtcaaacctatgaataatgacagacatcattaaaattaattactaataattacaaatataattattctatc 191  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | |||||||| ||||||||||||||||||||||||||||||    
T  45075751 aaatattagtataaagtaataataggttagtcaaacctatgaataatgacagacatcaatgaaattaatcactaataattacaaatataattattctatc 45075652  T
Q  192 atttataacgtttttgttgtt 212  Q
    |||| ||||||||||||||||    
T  45075651 atttgtaacgtttttgttgtt 45075631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 92 - 215
Target Start/End: Original strand, 7941674 - 7941797
Alignment:
Q  92 aaatattagtataaagtaataatagattagtcaaacctatgaataatgacagacatcattaaaattaattactaataattacaaatataattattctatc 191  Q
    |||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| ||||    
T  7941674 aaatattagtataaagtaatgataggttagtcaaacctatgaataatgacagacatcaatgaaattaattactaataattacaaatataattattatatc 7941773  T
Q  192 atttataacgtttttgttgttgca 215  Q
    |||| |||||||||||||||||||    
T  7941774 atttgtaacgtttttgttgttgca 7941797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 92 - 215
Target Start/End: Original strand, 11269952 - 11270075
Alignment:
Q  92 aaatattagtataaagtaataatagattagtcaaacctatgaataatgacagacatcattaaaattaattactaataattacaaatataattattctatc 191  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| | |||||||||||||||||||||||||||||||||||||||    
T  11269952 aaatattagtataaagtaataataggttagtcaaacctatgaataatgaaagacatcaatgaaattaattactaataattacaaatataattattctatc 11270051  T
Q  192 atttataacgtttttgttgttgca 215  Q
     ||| |||||||||||||||||||    
T  11270052 ctttctaacgtttttgttgttgca 11270075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 92 - 215
Target Start/End: Complemental strand, 32743586 - 32743463
Alignment:
Q  92 aaatattagtataaagtaataatagattagtcaaacctatgaataatgacagacatcattaaaattaattactaataattacaaatataattattctatc 191  Q
    ||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| | | |||||||||||||||||||||||||||||||||||||||    
T  32743586 aaatattagtataaagtaataataggttagtcaaacctatgaaaaatgacagacattaatgaaattaattactaataattacaaatataattattctatc 32743487  T
Q  192 atttataacgtttttgttgttgca 215  Q
    |||| |||||||||||||||||||    
T  32743486 atttgtaacgtttttgttgttgca 32743463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 92 - 215
Target Start/End: Original strand, 4274617 - 4274740
Alignment:
Q  92 aaatattagtataaagtaataatagattagtcaaacctatgaataatgacagacatcattaaaattaattactaataattacaaatataattattctatc 191  Q
    ||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||||||    
T  4274617 aaatattagtataaagtaataataggttattcaaacctatgaataatgacagacatcaatgaaatcaattactaataattacaaatataattattctatc 4274716  T
Q  192 atttataacgtttttgttgttgca 215  Q
    |||| |||||| ||||||||||||    
T  4274717 atttgtaacgtatttgttgttgca 4274740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 92 - 215
Target Start/End: Original strand, 39999247 - 39999370
Alignment:
Q  92 aaatattagtataaagtaataatagattagtcaaacctatgaataatgacagacatcattaaaattaattactaataattacaaatataattattctatc 191  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||   ||||||||||  |||||||||||||||||||||||||||    
T  39999247 aaatattagtataaagtaataataggttagtcaaacctatgaataatgacagacatcaacgaaattaattaaaaataattacaaatataattattctatc 39999346  T
Q  192 atttataacgtttttgttgttgca 215  Q
    |||| |||||||||||||||||||    
T  39999347 atttgtaacgtttttgttgttgca 39999370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 92 - 210
Target Start/End: Complemental strand, 4331240 - 4331122
Alignment:
Q  92 aaatattagtataaagtaataatagattagtcaaacctatgaataatgacagacatcattaaaattaattactaataattacaaatataattattctatc 191  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||| | |||||| | |||||||||||||||||||||||||||||||||||||||    
T  4331240 aaatattagtataaagtaataataggttagtcaaacctatgaataatgatatacatcaatgaaattaattactaataattacaaatataattattctatc 4331141  T
Q  192 atttataacgtttttgttg 210  Q
    ||||| |||||||||||||    
T  4331140 atttaaaacgtttttgttg 4331122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 92 - 213
Target Start/End: Original strand, 26494167 - 26494291
Alignment:
Q  92 aaatattagtataaagtaata---atagattagtcaaacctatgaataatgacagacatcattaaaattaattactaataattacaaatataattattct 188  Q
    |||||||||||||||||||||   |||| ||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||    
T  26494167 aaatattagtataaagtaatactaataggttagtcaaacctatgaataatgacaaacatcaataaaattaattactaataattacaaatataattattct 26494266  T
Q  189 atcatttataacgtttttgttgttg 213  Q
    ||||||| |||||||||||||||||    
T  26494267 atcatttgtaacgtttttgttgttg 26494291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 92 - 215
Target Start/End: Complemental strand, 32592619 - 32592496
Alignment:
Q  92 aaatattagtataaagtaataatagattagtcaaacctatgaataatgacagacatcattaaaattaattactaataattacaaatataattattctatc 191  Q
    |||||||| |||||||||||||||| || ||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||    
T  32592619 aaatattattataaagtaataataggttggtcaaacctatgaataatgacagacatcaatgaaattaattactaataattacaaatataattattctatc 32592520  T
Q  192 atttataacgtttttgttgttgca 215  Q
    |||| ||  |||||||||||||||    
T  32592519 atttgtagtgtttttgttgttgca 32592496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 92 - 215
Target Start/End: Complemental strand, 19842907 - 19842784
Alignment:
Q  92 aaatattagtataaagtaataatagattagtcaaacctatgaataatgacagacatcattaaaattaattactaataattacaaatataattattctatc 191  Q
    |||||||| | |||||||||||||| | |||||||||||||||||||||||||||||| | |||||||||| ||||||||||||||||||||||| ||||    
T  19842907 aaatattaatttaaagtaataataggtcagtcaaacctatgaataatgacagacatcaatgaaattaattaataataattacaaatataattattttatc 19842808  T
Q  192 atttataacgtttttgttgttgca 215  Q
    |||| |||||||||||||||||||    
T  19842807 atttgtaacgtttttgttgttgca 19842784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 111 - 215
Target Start/End: Complemental strand, 10659202 - 10659098
Alignment:
Q  111 taatagattagtcaaacctatgaataatgacagacatcattaaaattaattactaataattacaaatataattattctatcatttataacgtttttgttg 210  Q
    |||||| ||||||||||||||||||||||| |||||||| | ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  10659202 taataggttagtcaaacctatgaataatgatagacatcaatgaaattaattactaataattacaaatataattattctatcatttgtaacgtttttgttg 10659103  T
Q  211 ttgca 215  Q
    |||||    
T  10659102 ttgca 10659098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 101 - 215
Target Start/End: Original strand, 4274411 - 4274516
Alignment:
Q  101 tataaagtaataatagattagtcaaacctatgaataatgacagacatcattaaaattaattactaataattacaaatataattattctatcatttataac 200  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||| | ||||          |||||||||||||||||||||||||||||||||     
T  4274411 tataaagtaataataggttagtcaaacctatgaataatgacagacatcaatgaaat----------taattacaaatataattattctatcatttataat 4274500  T
Q  201 g-tttttgttgttgca 215  Q
    | ||||||||||||||    
T  4274501 gttttttgttgttgca 4274516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 101 - 215
Target Start/End: Complemental strand, 32592829 - 32592724
Alignment:
Q  101 tataaagtaataatagattagtcaaacctatgaataatgacagacatcattaaaattaattactaataattacaaatataattattctatcatttataac 200  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||| | ||||          |||||| ||||||||||||||||||||||||||     
T  32592829 tataaagtaataataggttagtcaaacctatgaataatgacagacatcaatgaaat----------taattataaatataattattctatcatttataat 32592740  T
Q  201 gttt-ttgttgttgca 215  Q
    |||| |||||||||||    
T  32592739 gtttattgttgttgca 32592724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 101 - 215
Target Start/End: Complemental strand, 30294656 - 30294551
Alignment:
Q  101 tataaagtaataatagattagtcaaacctatgaataatgacagacatcattaaaattaattactaataattacaaatataattattctatcatttataac 200  Q
    |||||||||||||| | |||||||||| ||||||||||||||||||||| | |||||||          ||||||||||||||||||||||||||||||     
T  30294656 tataaagtaataatgggttagtcaaacttatgaataatgacagacatcaatgaaattaa----------ttacaaatataattattctatcatttataat 30294567  T
Q  201 g-tttttgttgttgca 215  Q
    | ||||||||||||||    
T  30294566 gttttttgttgttgca 30294551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 101 - 206
Target Start/End: Complemental strand, 45075965 - 45075870
Alignment:
Q  101 tataaagtaataatagattagtcaaacctatgaataatgacagacatcattaaaattaattactaataattacaaatataattattctatcatttataac 200  Q
    |||||| ||||||||| |||||||| ||||||||||||||||||||||| | |||||||          ||||||||||||||||||||||||||||||     
T  45075965 tataaaataataataggttagtcaagcctatgaataatgacagacatcaatgaaattaa----------ttacaaatataattattctatcatttataat 45075876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 101 - 215
Target Start/End: Original strand, 7941464 - 7941569
Alignment:
Q  101 tataaagtaataatagattagtcaaacctatgaataatgacagacatcattaaaattaattactaataattacaaatataattattctatcatttataac 200  Q
    |||||||||||||||  |||||||||||||| ||||||||||||||||| | ||||          |||||| ||||||||||||||||||||||||||     
T  7941464 tataaagtaataataagttagtcaaacctataaataatgacagacatcaatgaaat----------taattataaatataattattctatcatttataat 7941553  T
Q  201 g-tttttgttgttgca 215  Q
    | ||||||||||||||    
T  7941554 gttttttgttgttgca 7941569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 101 - 215
Target Start/End: Complemental strand, 20485248 - 20485143
Alignment:
Q  101 tataaagtaataatagattagtcaaacctatgaataatgacagacatcattaaaattaattactaataattacaaatataattattctatcatttataac 200  Q
    |||||||||||||||| ||||||||| ||||||||||| |||||||||| | |||||||          ||||||||||||||||| ||||||||||||     
T  20485248 tataaagtaataataggttagtcaaatctatgaataattacagacatcaatgaaattaa----------ttacaaatataattattatatcatttataat 20485159  T
Q  201 g-tttttgttgttgca 215  Q
    | ||||||||||||||    
T  20485158 gttttttgttgttgca 20485143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 101 - 162
Target Start/End: Complemental strand, 19843118 - 19843057
Alignment:
Q  101 tataaagtaataatagattagtcaaacctatgaataatgacagacatcattaaaattaatta 162  Q
    |||||||||||||||| |||||||||||||| |||||||||| |||||| | ||||||||||    
T  19843118 tataaagtaataataggttagtcaaacctattaataatgacaaacatcaatgaaattaatta 19843057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 101 - 215
Target Start/End: Original strand, 26493939 - 26494044
Alignment:
Q  101 tataaagtaataatagattagtcaaacctatgaataatgacagacatcattaaaattaattactaataattacaaatataattattctatcatttataac 200  Q
    |||||||||||||||||||||||||||| ||||||||| ||| | |||| | ||||          ||||||||||||||||||||||||||| |||||     
T  26493939 tataaagtaataatagattagtcaaaccaatgaataatcacaaatatcaatgaaat----------taattacaaatataattattctatcatatataat 26494028  T
Q  201 g-tttttgttgttgca 215  Q
    | ||||||||||||||    
T  26494029 gttttttgttgttgca 26494044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 101 - 168
Target Start/End: Complemental strand, 31889685 - 31889618
Alignment:
Q  101 tataaagtaataatagattagtcaaacctatgaataatgacagacatcattaaaattaattactaata 168  Q
    |||||||||||||||| ||||||||||  ||||||||||| |||||||| | ||||||||||| ||||    
T  31889685 tataaagtaataataggttagtcaaactgatgaataatgatagacatcaatgaaattaattacaaata 31889618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 118 - 179
Target Start/End: Original strand, 31890103 - 31890164
Alignment:
Q  118 ttagtcaaacctatgaataatgacagacatcattaaaattaattactaataattacaaatat 179  Q
    ||||||||||||| ||| ||||| |||||||| | ||||||||||| |||||||| ||||||    
T  31890103 ttagtcaaacctacgaaaaatgatagacatcaatgaaattaattacaaataattataaatat 31890164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 131 - 179
Target Start/End: Complemental strand, 34722423 - 34722375
Alignment:
Q  131 tgaataatgacagacatcattaaaattaattactaataattacaaatat 179  Q
    |||||||| | |||||||| | ||||||||||| |||||||||||||||    
T  34722423 tgaataattatagacatcaatgaaattaattacaaataattacaaatat 34722375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 104; Significance: 8e-52; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 92 - 215
Target Start/End: Complemental strand, 14002898 - 14002775
Alignment:
Q  92 aaatattagtataaagtaataatagattagtcaaacctatgaataatgacagacatcattaaaattaattactaataattacaaatataattattctatc 191  Q
    ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| | ||||||||||||||| |||||||||||||||||||||||    
T  14002898 aaatattagtataaagtaataatagattattcaaatctatgaataatgacagacatcaatgaaattaattactaatgattacaaatataattattctatc 14002799  T
Q  192 atttataacgtttttgttgttgca 215  Q
    ||||||||||||||||||||||||    
T  14002798 atttataacgtttttgttgttgca 14002775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 92 - 215
Target Start/End: Original strand, 23265910 - 23266033
Alignment:
Q  92 aaatattagtataaagtaataatagattagtcaaacctatgaataatgacagacatcattaaaattaattactaataattacaaatataattattctatc 191  Q
    |||||||||||||||||||||||||  |||||||||||||||||||||| |||||||| | |||||||||||||||||||||||||||||||||||||||    
T  23265910 aaatattagtataaagtaataataggctagtcaaacctatgaataatgaaagacatcaatgaaattaattactaataattacaaatataattattctatc 23266009  T
Q  192 atttataacgtttttgttgttgca 215  Q
    |||| |||||||||||||||||||    
T  23266010 atttgtaacgtttttgttgttgca 23266033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 92 - 215
Target Start/End: Original strand, 2271407 - 2271530
Alignment:
Q  92 aaatattagtataaagtaataatagattagtcaaacctatgaataatgacagacatcattaaaattaattactaataattacaaatataattattctatc 191  Q
    ||||||||||||||||||||||||| | |||||||||||||||||||||||||| ||| | |||||||||| ||||||||||||||||||||||||||||    
T  2271407 aaatattagtataaagtaataataggtcagtcaaacctatgaataatgacagacttcaatgaaattaattaataataattacaaatataattattctatc 2271506  T
Q  192 atttataacgtttttgttgttgca 215  Q
    |||| |||||||||||||||||||    
T  2271507 atttgtaacgtttttgttgttgca 2271530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 92 - 210
Target Start/End: Original strand, 23260904 - 23261022
Alignment:
Q  92 aaatattagtataaagtaataatagattagtcaaacctatgaataatgacagacatcattaaaattaattactaataattacaaatataattattctatc 191  Q
    |||||||||||||||||||||||||  |||||||||||||||||||||| |||||||| | |||||||||||||||||||||||||||||||||||||||    
T  23260904 aaatattagtataaagtaataataggctagtcaaacctatgaataatgaaagacatcaatgaaattaattactaataattacaaatataattattctatc 23261003  T
Q  192 atttataacgtttttgttg 210  Q
    |||| ||||||||||||||    
T  23261004 atttgtaacgtttttgttg 23261022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 92 - 214
Target Start/End: Original strand, 29407536 - 29407658
Alignment:
Q  92 aaatattagtataaagtaataatagattagtcaaacctatgaataatgacagacatcattaaaattaattactaataattacaaatataattattctatc 191  Q
    ||||||||||| ||||||||||||| ||||||||| |||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| ||    
T  29407536 aaatattagtagaaagtaataataggttagtcaaatctatgaataatgacagacatcaatgaaattaattactaataattacaaatataattattctttc 29407635  T
Q  192 atttataacgtttttgttgttgc 214  Q
    |||| ||||||||||||||||||    
T  29407636 atttgtaacgtttttgttgttgc 29407658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 92 - 210
Target Start/End: Original strand, 37321808 - 37321926
Alignment:
Q  92 aaatattagtataaagtaataatagattagtcaaacctatgaataatgacagacatcattaaaattaattactaataattacaaatataattattctatc 191  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||    
T  37321808 aaatattagtataaagtaataatagattagttaaacctatgaataatgacagacatcaatgaaattaattactaataattacaaatataattattctatc 37321907  T
Q  192 atttataacgtttttgttg 210  Q
    ||||  ||| |||||||||    
T  37321908 atttgaaacatttttgttg 37321926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 90 - 209
Target Start/End: Complemental strand, 6233013 - 6232894
Alignment:
Q  90 ttaaatattagtataaagtaataatagattagtcaaacctatgaataatgacagacatcattaaaattaattactaataattacaaatataattattcta 189  Q
    ||||||||||| ||||||||||||||| ||||||||||||||||||||||||| |||||| | |||||||||||||||||||||||||||||||||||||    
T  6233013 ttaaatattagcataaagtaataataggttagtcaaacctatgaataatgacatacatcaattaaattaattactaataattacaaatataattattcta 6232914  T
Q  190 tcatttataacgtttttgtt 209  Q
    ||||||  ||||||||||||    
T  6232913 tcatttgaaacgtttttgtt 6232894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 92 - 210
Target Start/End: Complemental strand, 40156910 - 40156792
Alignment:
Q  92 aaatattagtataaagtaataatagattagtcaaacctatgaataatgacagacatcattaaaattaattactaataattacaaatataattattctatc 191  Q
    ||||||||||||||||||||||||| |||||||||||||| |||||||| |||||||| | |||||||||||||||||||||||||||||||||||||||    
T  40156910 aaatattagtataaagtaataataggttagtcaaacctatcaataatgatagacatcaatgaaattaattactaataattacaaatataattattctatc 40156811  T
Q  192 atttataacgtttttgttg 210  Q
    ||||  |||||||||||||    
T  40156810 atttgaaacgtttttgttg 40156792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 153 - 215
Target Start/End: Complemental strand, 28138924 - 28138862
Alignment:
Q  153 aaattaattactaataattacaaatataattattctatcatttataacgtttttgttgttgca 215  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  28138924 aaattaattactaataattacaaatataattattctatcatttgtaacgtttttgttgttgca 28138862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 101 - 206
Target Start/End: Original strand, 1729129 - 1729224
Alignment:
Q  101 tataaagtaataatagattagtcaaacctatgaataatgacagacatcattaaaattaattactaataattacaaatataattattctatcatttataac 200  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||| | ||||          |||||||||||||||||||||||||||||||||     
T  1729129 tataaagtaataatagattaatcaaacctatgaataatgacagacatcaatgaaat----------taattacaaatataattattctatcatttataat 1729218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 101 - 168
Target Start/End: Complemental strand, 28139241 - 28139174
Alignment:
Q  101 tataaagtaataatagattagtcaaacctatgaataatgacagacatcattaaaattaattactaata 168  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||| | ||||||||||| ||||    
T  28139241 tataaagtaataataggttagtcaaacctatgaataatgacagacatcaatgaaattaattacaaata 28139174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 101 - 162
Target Start/End: Original strand, 29407328 - 29407389
Alignment:
Q  101 tataaagtaataatagattagtcaaacctatgaataatgacagacatcattaaaattaatta 162  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||| | ||||||||||    
T  29407328 tataaagtaataataggttagtcaaacctatgaataatgacagacatcaattaaattaatta 29407389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 101 - 215
Target Start/End: Original strand, 2271198 - 2271303
Alignment:
Q  101 tataaagtaataatagattagtcaaacctatgaataatgacagacatcattaaaattaattactaataattacaaatataattattctatcatttataac 200  Q
    |||||||||||||||| |||||||||| ||| ||||||||||||||||| | ||||          |||||||||||||||||||||||||||||||||     
T  2271198 tataaagtaataataggttagtcaaacttattaataatgacagacatcaatgaaat----------taattacaaatataattattctatcatttataat 2271287  T
Q  201 g-tttttgttgttgca 215  Q
    | ||||||||||||||    
T  2271288 gttttttgttgttgca 2271303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 101 - 215
Target Start/End: Original strand, 23260698 - 23260803
Alignment:
Q  101 tataaagtaataatagattagtcaaacctatgaataatgacagacatcattaaaattaattactaataattacaaatataattattctatcatttataac 200  Q
    |||||||||||||||| |||||||||||||||||||| ||||||||||  | ||||          |||||||||||||||||||||||||||||||||     
T  23260698 tataaagtaataataggttagtcaaacctatgaataacgacagacatcgatgaaat----------taattacaaatataattattctatcatttataat 23260787  T
Q  201 gttt-ttgttgttgca 215  Q
    |||| |||||||||||    
T  23260788 gtttcttgttgttgca 23260803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 92 - 161
Target Start/End: Complemental strand, 28139013 - 28138945
Alignment:
Q  92 aaatattagtataaagtaataatagattagtcaaacctatgaataatgacagacatcattaaaattaatt 161  Q
    ||||||||||||||||||||||| | ||||||||||||||||||||||||| |||||| | |||||||||    
T  28139013 aaatattagtataaagtaataatgg-ttagtcaaacctatgaataatgacaaacatcaatgaaattaatt 28138945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 153 - 215
Target Start/End: Complemental strand, 14003065 - 14003002
Alignment:
Q  153 aaattaattactaataattacaaatataattattctatcatttataacg-tttttgttgttgca 215  Q
    |||||||||||||||||||| ||||||||||||| |||||||||||| | ||||||||||||||    
T  14003065 aaattaattactaataattataaatataattattttatcatttataatgttttttgttgttgca 14003002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 101 - 168
Target Start/End: Original strand, 37294683 - 37294750
Alignment:
Q  101 tataaagtaataatagattagtcaaacctatgaataatgacagacatcattaaaattaattactaata 168  Q
    |||||||||||||||| ||| ||||||||||||||||||||| |||||| | ||||||||||| ||||    
T  37294683 tataaagtaataataggttaatcaaacctatgaataatgacatacatcaatgaaattaattacaaata 37294750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 167 - 215
Target Start/End: Original strand, 23265760 - 23265809
Alignment:
Q  167 taattacaaatataattattctatcatttataacgttt-ttgttgttgca 215  Q
    ||||||||||||||||||||||||||||||||| |||| |||||||||||    
T  23265760 taattacaaatataattattctatcatttataatgtttcttgttgttgca 23265809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 118 - 180
Target Start/End: Original strand, 29193775 - 29193837
Alignment:
Q  118 ttagtcaaacctatgaataatgacagacatcattaaaattaattactaataattacaaatata 180  Q
    |||||||||||||| |||||||||| |||| | |||| |||||||  ||||||||||||||||    
T  29193775 ttagtcaaacctataaataatgacaaacataaataaacttaattataaataattacaaatata 29193837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 118 - 180
Target Start/End: Complemental strand, 44553214 - 44553152
Alignment:
Q  118 ttagtcaaacctatgaataatgacagacatcattaaaattaattactaataattacaaatata 180  Q
    ||||||||||||||||||||||| | |||| | ||||||||| ||  ||||||||||||||||    
T  44553214 ttagtcaaacctatgaataatgatatacataaataaaattaaatataaataattacaaatata 44553152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 123 - 179
Target Start/End: Original strand, 37893266 - 37893322
Alignment:
Q  123 caaacctatgaataatgacagacatcattaaaattaattactaataattacaaatat 179  Q
    ||||| |||||||||||| ||| |||| | ||||||||||| |||||||||||||||    
T  37893266 caaacatatgaataatgatagatatcaatgaaattaattacaaataattacaaatat 37893322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 104; Significance: 8e-52; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 92 - 215
Target Start/End: Original strand, 5329681 - 5329804
Alignment:
Q  92 aaatattagtataaagtaataatagattagtcaaacctatgaataatgacagacatcattaaaattaattactaataattacaaatataattattctatc 191  Q
    ||||||||||||||||||||||||  |||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||    
T  5329681 aaatattagtataaagtaataataagttagtcaaacctatgaataatgacagacatcaatgaaattaattactaataattacaaatataattattctatc 5329780  T
Q  192 atttataacgtttttgttgttgca 215  Q
    |||| |||||||||||||||||||    
T  5329781 atttgtaacgtttttgttgttgca 5329804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 92 - 215
Target Start/End: Complemental strand, 21700281 - 21700158
Alignment:
Q  92 aaatattagtataaagtaataatagattagtcaaacctatgaataatgacagacatcattaaaattaattactaataattacaaatataattattctatc 191  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| ||||    
T  21700281 aaatattagtataaagtaataataggttagtcaaacctatgaataatgacagacatcaatgaaattaattactaataattacaaatataattattatatc 21700182  T
Q  192 atttataacgtttttgttgttgca 215  Q
    |||| |||||||||||||||||||    
T  21700181 atttctaacgtttttgttgttgca 21700158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 92 - 215
Target Start/End: Complemental strand, 51461462 - 51461339
Alignment:
Q  92 aaatattagtataaagtaataatagattagtcaaacctatgaataatgacagacatcattaaaattaattactaataattacaaatataattattctatc 191  Q
    |||||||||||||||||||||| || |||||||||||||||||||| ||||||||||| | |||||||||||||||||||||||||||||||||||||||    
T  51461462 aaatattagtataaagtaataagaggttagtcaaacctatgaataacgacagacatcaatgaaattaattactaataattacaaatataattattctatc 51461363  T
Q  192 atttataacgtttttgttgttgca 215  Q
    |||| |||||||||||||||||||    
T  51461362 atttgtaacgtttttgttgttgca 51461339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 92 - 215
Target Start/End: Complemental strand, 42290674 - 42290552
Alignment:
Q  92 aaatattagtataaagtaataatagattagtcaaacctatgaataatgacagacatcattaaaattaattactaataattacaaatataattattctatc 191  Q
    ||||||||||||||||||||||||| |||||||||| |||||||||| ||| |||||| | |||||||||||||||||||||||||||||||||||||||    
T  42290674 aaatattagtataaagtaataataggttagtcaaacttatgaataataaca-acatcaatgaaattaattactaataattacaaatataattattctatc 42290576  T
Q  192 atttataacgtttttgttgttgca 215  Q
    |||| |||||||||||||||||||    
T  42290575 atttgtaacgtttttgttgttgca 42290552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 95 - 213
Target Start/End: Original strand, 12627805 - 12627923
Alignment:
Q  95 tattagtataaagtaataatagattagtcaaacctatgaataatgacagacatcattaaaattaattactaataattacaaatataattattctatcatt 194  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||| |||| | |  ||||||||||||||||||||| ||||||||||||||| |||    
T  12627805 tattagtataaagtaataataggttagtcaaacctatgaataatgacaaacattaatttaattaattactaataattacagatataattattctattatt 12627904  T
Q  195 tataacgtttttgttgttg 213  Q
    | |||||||||||||||||    
T  12627905 tgtaacgtttttgttgttg 12627923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 92 - 215
Target Start/End: Complemental strand, 7943347 - 7943224
Alignment:
Q  92 aaatattagtataaagtaataatagattagtcaaacctatgaataatgacagacatcattaaaattaattactaataattacaaatataattattctatc 191  Q
    |||||||||||||||| |||||||  |||| ||||| ||| |||||||||| |||||| | |||||||||||||||||||||||||||||||||||||||    
T  7943347 aaatattagtataaaggaataatatgttagccaaacatataaataatgacatacatcaatgaaattaattactaataattacaaatataattattctatc 7943248  T
Q  192 atttataacgtttttgttgttgca 215  Q
    |||| ||||||| |||||||||||    
T  7943247 atttgtaacgttgttgttgttgca 7943224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 101 - 215
Target Start/End: Original strand, 12627574 - 12627678
Alignment:
Q  101 tataaagtaataatagattagtcaaacctatgaataatgacagacatcattaaaattaattactaataattacaaatataattattctatcatttataac 200  Q
    ||||||| |||||||| ||| ||||| |||||||||||||||||||||| | ||||||||          |||||||||||||||||||||||||||||     
T  12627574 tataaagcaataataggttaatcaaatctatgaataatgacagacatcaatgaaattaat----------tacaaatataattattctatcatttataat 12627663  T
Q  201 gtttttgttgttgca 215  Q
     ||||||||||||||    
T  12627664 atttttgttgttgca 12627678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 101 - 215
Target Start/End: Original strand, 5329453 - 5329558
Alignment:
Q  101 tataaagtaataatagattagtcaaacctatgaataatgacagacatcattaaaattaattactaataattacaaatataattattctatcatttataac 200  Q
    |||||||||||||||| ||| |||||||||| |||||||||| |||||| | ||||          |||||||||||||||||||||||||||||||||     
T  5329453 tataaagtaataataggttattcaaacctatcaataatgacaaacatcaatgaaat----------taattacaaatataattattctatcatttataat 5329542  T
Q  201 g-tttttgttgttgca 215  Q
    | ||||||||||||||    
T  5329543 gttttttgttgttgca 5329558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 101 - 215
Target Start/End: Complemental strand, 51461672 - 51461566
Alignment:
Q  101 tataaagtaataatagattagtcaaa-cctatgaataatgacagacatcattaaaattaattactaataattacaaatataattattctatcatttataa 199  Q
    |||||||||||||||| ||||| ||| ||||||||||||||||||||||| | |||||||          ||||||||||||||| ||||||||||||||    
T  51461672 tataaagtaataataggttagtgaaaacctatgaataatgacagacatcaatgaaattaa----------ttacaaatataattaatctatcatttataa 51461583  T
Q  200 cg-tttttgttgttgca 215  Q
     | ||||||||||||||    
T  51461582 tgttttttgttgttgca 51461566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 101 - 206
Target Start/End: Original strand, 41909290 - 41909385
Alignment:
Q  101 tataaagtaataatagattagtcaaacctatgaataatgacagacatcattaaaattaattactaataattacaaatataattattctatcatttataac 200  Q
    |||||||||||||||| ||||||||| |||| |||||||||| |||||| | | ||| ||||          |||||||||||||||||||||||||||     
T  41909290 tataaagtaataataggttagtcaaatctattaataatgacatacatcaatgacattcatta----------caaatataattattctatcatttataat 41909379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 92 - 127
Target Start/End: Original strand, 41909517 - 41909552
Alignment:
Q  92 aaatattagtataaagtaataatagattagtcaaac 127  Q
    ||||||||||||||||||||||||| ||||||||||    
T  41909517 aaatattagtataaagtaataataggttagtcaaac 41909552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 100; Significance: 2e-49; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 92 - 215
Target Start/End: Original strand, 35282062 - 35282185
Alignment:
Q  92 aaatattagtataaagtaataatagattagtcaaacctatgaataatgacagacatcattaaaattaattactaataattacaaatataattattctatc 191  Q
    ||||||||||||||||||||||||| ||||| ||||||||||||||||||| |||||| | |||||||||||||||||||||||||||||||||||||||    
T  35282062 aaatattagtataaagtaataataggttagtgaaacctatgaataatgacaaacatcaatgaaattaattactaataattacaaatataattattctatc 35282161  T
Q  192 atttataacgtttttgttgttgca 215  Q
    |||| |||||||||||||||||||    
T  35282162 atttctaacgtttttgttgttgca 35282185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 92 - 215
Target Start/End: Complemental strand, 41622554 - 41622431
Alignment:
Q  92 aaatattagtataaagtaataatagattagtcaaacctatgaataatgacagacatcattaaaattaattactaataattacaaatataattattctatc 191  Q
    ||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||| | |||||||||||||||||||||||||||||||||| ||||    
T  41622554 aaatattagtataaagtaataataggttagtgaaacctataaataatgacagacatcaatgaaattaattactaataattacaaatataattattatatc 41622455  T
Q  192 atttataacgtttttgttgttgca 215  Q
    |||| |||||||||||||||||||    
T  41622454 atttgtaacgtttttgttgttgca 41622431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 92 - 215
Target Start/End: Original strand, 20743655 - 20743777
Alignment:
Q  92 aaatattagtataaagtaataatagattagtcaaacctatgaataatgacagacatcattaaaattaattactaataattacaaatataattattctatc 191  Q
    ||||||||||||||||||||||||| | ||||||||||||||||||||| |||||||| | |||||||||| ||||||||||||||||||||||||||||    
T  20743655 aaatattagtataaagtaataataggtcagtcaaacctatgaataatga-agacatcaatgaaattaattaataataattacaaatataattattctatc 20743753  T
Q  192 atttataacgtttttgttgttgca 215  Q
    |||| |||||||||||||||||||    
T  20743754 atttgtaacgtttttgttgttgca 20743777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 92 - 215
Target Start/End: Complemental strand, 35671488 - 35671365
Alignment:
Q  92 aaatattagtataaagtaataatagattagtcaaacctatgaataatgacagacatcattaaaattaattactaataattacaaatataattattctatc 191  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | |||||||||||||||| |||  |||||||||||| ||||    
T  35671488 aaatattagtataaagtaataataggttagtcaaacctatgaataatgacagacatcaatgaaattaattactaatagttatcaatataattattttatc 35671389  T
Q  192 atttataacgtttttgttgttgca 215  Q
    |||| ||| |||||||||||||||    
T  35671388 atttgtaaagtttttgttgttgca 35671365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 92 - 215
Target Start/End: Original strand, 2170249 - 2170360
Alignment:
Q  92 aaatattagtataaagtaataatagattagtcaaacctatgaataatgacagacatcattaaaattaattactaataattacaaatataattattctatc 191  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||             |||||||||||||||||||||||||||||||||||||||||    
T  2170249 aaatattagtataaagtaataataggttagtcaaacctatgaataaa------------taaaattaattactaataattacaaatataattattctatc 2170336  T
Q  192 atttataacgtttttgttgttgca 215  Q
     ||| |||||||||||||||||||    
T  2170337 gtttgtaacgtttttgttgttgca 2170360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 101 - 168
Target Start/End: Complemental strand, 41622763 - 41622696
Alignment:
Q  101 tataaagtaataatagattagtcaaacctatgaataatgacagacatcattaaaattaattactaata 168  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||| | ||||||||||| ||||    
T  41622763 tataaagtaataataggttagtcaaacctatgaataatgacagacatcaatgaaattaattacaaata 41622696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 107 - 215
Target Start/End: Complemental strand, 30192874 - 30192775
Alignment:
Q  107 gtaataatagattagtcaaacctatgaataatgacagacatcattaaaattaattactaataattacaaatataattattctatcatttataacg-tttt 205  Q
    |||||||||| |||||||||||||||||||||||||||||||| | |||||||          |||||||||||||||||||||||||||||| | ||||    
T  30192874 gtaataataggttagtcaaacctatgaataatgacagacatcaatgaaattaa----------ttacaaatataattattctatcatttataatgttttt 30192785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 101 - 206
Target Start/End: Original strand, 2170042 - 2170138
Alignment:
Q  101 tataaagtaataatagattagtcaaacctatgaataatgacagacatcattaaaattaattactaataattacaaatataattattctatcatttataac 200  Q
    |||||||||||||||  ||||||||||||||||||||||||| |||||| | ||||||||         ||||||||||||||||||||||||||||||     
T  2170042 tataaagtaataataagttagtcaaacctatgaataatgacaaacatcaatgaaattaat---------ttacaaatataattattctatcatttataat 2170132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 101 - 215
Target Start/End: Complemental strand, 35671777 - 35671673
Alignment:
Q  101 tataaagtaataatagattagtcaaacctatgaataatgacagacatcattaaaattaattactaataattacaaatataattattctatcatttataac 200  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||| | ||||| |           |||||||||||||||||||||||||||||     
T  35671777 tataaagtaataataggttagtcaaacctatgaataatgacagacatcaatgaaattta-----------tacaaatataattattctatcatttataat 35671689  T
Q  201 gtt-tttgttgttgca 215  Q
    ||| ||||||||||||    
T  35671688 gttatttgttgttgca 35671673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 101 - 215
Target Start/End: Original strand, 20743448 - 20743553
Alignment:
Q  101 tataaagtaataatagattagtcaaacctatgaataatgacagacatcattaaaattaattactaataattacaaatataattattctatcatttataac 200  Q
    |||||||||||||||| |||||||||||||| ||||||||||||||||| | ||||          |||||||||||||||||||||||||||||| ||     
T  20743448 tataaagtaataataggttagtcaaacctattaataatgacagacatcaatgaaat----------taattacaaatataattattctatcatttaaaat 20743537  T
Q  201 g-tttttgttgttgca 215  Q
    | ||||||||||||||    
T  20743538 gttttttgttgttgca 20743553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 92 - 127
Target Start/End: Complemental strand, 35671549 - 35671514
Alignment:
Q  92 aaatattagtataaagtaataatagattagtcaaac 127  Q
    ||||||||||||||||||||||||| ||||||||||    
T  35671549 aaatattagtataaagtaataataggttagtcaaac 35671514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 131 - 179
Target Start/End: Complemental strand, 30966288 - 30966240
Alignment:
Q  131 tgaataatgacagacatcattaaaattaattactaataattacaaatat 179  Q
    |||||||||| |||||||| | ||||||||||  |||||||||||||||    
T  30966288 tgaataatgatagacatcaatgaaattaattataaataattacaaatat 30966240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 99; Significance: 8e-49; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 92 - 210
Target Start/End: Original strand, 32396319 - 32396437
Alignment:
Q  92 aaatattagtataaagtaataatagattagtcaaacctatgaataatgacagacatcattaaaattaattactaataattacaaatataattattctatc 191  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||    
T  32396319 aaatattagtataaagtaataataggttagtcaaacctatgaataatgatagacatcaataaaattaattactaataattacaaatataattattctatc 32396418  T
Q  192 atttataacgtttttgttg 210  Q
    ||||  |||||||||||||    
T  32396419 atttgaaacgtttttgttg 32396437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 92 - 215
Target Start/End: Original strand, 11159094 - 11159217
Alignment:
Q  92 aaatattagtataaagtaataatagattagtcaaacctatgaataatgacagacatcattaaaattaattactaataattacaaatataattattctatc 191  Q
    ||||||||||||||||||||||||| ||||||||| ||||||||||||||| |||||| | ||||||||||||||||||| |||||||||||||||||||    
T  11159094 aaatattagtataaagtaataataggttagtcaaatctatgaataatgacaaacatcaatgaaattaattactaataatttcaaatataattattctatc 11159193  T
Q  192 atttataacgtttttgttgttgca 215  Q
    |||| |||||||||||||||||||    
T  11159194 atttgtaacgtttttgttgttgca 11159217  T

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Target: chr6; HSP #3
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 92 - 210
Target Start/End: Original strand, 17338447 - 17338565
Alignment:
Q  92 aaatattagtataaagtaataatagattagtcaaacctatgaataatgacagacatcattaaaattaattactaataattacaaatataattattctatc 191  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | | |||||||||||||||||||||||||||||||||||||    
T  17338447 aaatattagtataaagtaataataggttagtcaaacctatgaataatgacagacatcaatgatattaattactaataattacaaatataattattctatc 17338546  T
Q  192 atttataacgtttttgttg 210  Q
    ||||  || ||||||||||    
T  17338547 atttgaaaggtttttgttg 17338565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 92 - 209
Target Start/End: Complemental strand, 26350631 - 26350514
Alignment:
Q  92 aaatattagtataaagtaataatagattagtcaaacctatgaataatgacagacatcattaaaattaattactaataattacaaatataattattctatc 191  Q
    |||||||||||||||||||||| || ||| ||||||||||||||||||| |||||||| | |||||||||||||||||||||||||||||||||||||||    
T  26350631 aaatattagtataaagtaataacaggttattcaaacctatgaataatgatagacatcaatgaaattaattactaataattacaaatataattattctatc 26350532  T
Q  192 atttataacgtttttgtt 209  Q
    ||||  ||||||||||||    
T  26350531 atttgaaacgtttttgtt 26350514  T

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Target: chr6; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 92 - 215
Target Start/End: Original strand, 17338231 - 17338345
Alignment:
Q  92 aaatattagtataaagtaataatagattagtcaaacctatgaataatgacagacatcattaaaattaattactaataattacaaatataattattctatc 191  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | ||||          |||||||||||||||||||||||||    
T  17338231 aaatattagtataaagtaataataggttagtcaaacctatgaataatgacagacatcactgaaat----------taattacaaatataattattctatc 17338320  T
Q  192 atttataa-cgtttttgttgttgca 215  Q
    ||||||||   ||||||||||||||    
T  17338321 atttataatattttttgttgttgca 17338345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 101 - 215
Target Start/End: Original strand, 11158885 - 11158990
Alignment:
Q  101 tataaagtaataatagattagtcaaacctatgaataatgacagacatcattaaaattaattactaataattacaaatataattattctatcatttataac 200  Q
    |||||||||||||||| |||||||||||||| |||||||||| |||||| | ||||          |||||||||||||||||||||||||||||||||     
T  11158885 tataaagtaataataggttagtcaaacctataaataatgacatacatcaatgaaat----------taattacaaatataattattctatcatttataat 11158974  T
Q  201 g-tttttgttgttgca 215  Q
    | ||||||||||||||    
T  11158975 gttttttgttgttgca 11158990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 118 - 180
Target Start/End: Original strand, 22209485 - 22209547
Alignment:
Q  118 ttagtcaaacctatgaataatgacagacatcattaaaattaattactaataattacaaatata 180  Q
    ||||||||||| ||||||||||| | |||| | ||||||||||||  ||||||||||||||||    
T  22209485 ttagtcaaaccaatgaataatgataaacataaataaaattaattataaataattacaaatata 22209547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 173 - 215
Target Start/End: Complemental strand, 35096963 - 35096921
Alignment:
Q  173 caaatataattattctatcatttataacgtttttgttgttgca 215  Q
    ||||||||||||||||||||||| |||||||||| ||||||||    
T  35096963 caaatataattattctatcatttgtaacgttttttttgttgca 35096921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 131 - 179
Target Start/End: Original strand, 15888674 - 15888722
Alignment:
Q  131 tgaataatgacagacatcattaaaattaattactaataattacaaatat 179  Q
    |||||||||| |||||| | ||||||||||||| ||||| |||||||||    
T  15888674 tgaataatgatagacataaataaaattaattacaaataaatacaaatat 15888722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 92; Significance: 1e-44; HSPs: 3)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 92 - 215
Target Start/End: Complemental strand, 127897 - 127774
Alignment:
Q  92 aaatattagtataaagtaataatagattagtcaaacctatgaataatgacagacatcattaaaattaattactaataattacaaatataattattctatc 191  Q
    ||||||||||||||||||||||| | | |||||||||||||||||||||||||||||| | |||||||||| ||||||||||||||||||||||||||||    
T  127897 aaatattagtataaagtaataattggtcagtcaaacctatgaataatgacagacatcaatgaaattaattaataataattacaaatataattattctatc 127798  T
Q  192 atttataacgtttttgttgttgca 215  Q
    |||| |||| ||||||||||||||    
T  127797 atttgtaacatttttgttgttgca 127774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 101 - 168
Target Start/End: Complemental strand, 128134 - 128067
Alignment:
Q  101 tataaagtaataatagattagtcaaacctatgaataatgacagacatcattaaaattaattactaata 168  Q
    |||||||||||||||| |||||||||||||| |||||||| |||||||| | ||||||||||| ||||    
T  128134 tataaagtaataataggttagtcaaacctattaataatgaaagacatcaatgaaattaattacaaata 128067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 174 - 215
Target Start/End: Complemental strand, 128042 - 128000
Alignment:
Q  174 aaatataattattctatcatttataacg-tttttgttgttgca 215  Q
    |||||||||||||||||||||||||| | ||||||||||||||    
T  128042 aaatataattattctatcatttataatgttttttgttgttgca 128000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1379 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold1379
Description:

Target: scaffold1379; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 131 - 179
Target Start/End: Original strand, 308 - 356
Alignment:
Q  131 tgaataatgacagacatcattaaaattaattactaataattacaaatat 179  Q
    |||||||||| |||||||| | ||||||||||| |||||||||||||||    
T  308 tgaataatgatagacatcaatgaaattaattacaaataattacaaatat 356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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