View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5875_low_25 (Length: 333)
Name: NF5875_low_25
Description: NF5875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5875_low_25 |
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Alignment Details
Target: chr6 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 1 - 329
Target Start/End: Original strand, 33214474 - 33214803
Alignment:
| Q |
1 |
aaaaattactcattcataaaaagaagtttaggattacagtgtaagttatgtatttgattaaatcaagtaaacagcacatatgattttatatgtatgctta |
100 |
Q |
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| T |
33214474 |
aaaaattactcagtcataaaaagaagtttaggattacagtgtaagttatgtatttgattaaatcaagtaaacaacacagatgattttatatgtatgctta |
33214573 |
T |
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| Q |
101 |
tctcaatgcttaaaactacagatatgtatctttactaattctacaaataaattaatctaagttgttatagttaaataaattatccaaaaataaaatcaga |
200 |
Q |
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| T |
33214574 |
tctcattgcttaaaactacagatatgtatctttactaattctacaaataaattaatctatgttgttatagttaaataaattatccaaaaataaaatcaga |
33214673 |
T |
|
| Q |
201 |
aacagtatactttccaaaaaagactagaaagtagaataacagtataaattttcatatatccaaataaataataacaagagaaatgatat-acaggaaaag |
299 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
33214674 |
aacagtatagtttccaaaaaagactagaaagtagaataacagtataaattttcatatatccaaataaataataacaagagaaatgatataacaggaaaag |
33214773 |
T |
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| Q |
300 |
gtatgataaggactttctgttgtttgtctg |
329 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
33214774 |
gtatgataaggactttctgttgtttgtctg |
33214803 |
T |
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