View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5875_low_28 (Length: 280)

Name: NF5875_low_28
Description: NF5875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5875_low_28
NF5875_low_28
[»] chr4 (15 HSPs)
chr4 (18-271)||(2621028-2621281)
chr4 (25-166)||(2367648-2367789)
chr4 (21-136)||(2486249-2486364)
chr4 (24-119)||(5106333-5106428)
chr4 (69-134)||(2547522-2547587)
chr4 (25-146)||(12124770-12124891)
chr4 (22-122)||(2472035-2472135)
chr4 (22-136)||(2491071-2491185)
chr4 (22-119)||(5102106-5102203)
chr4 (25-119)||(2519179-2519273)
chr4 (22-136)||(2525700-2525814)
chr4 (25-166)||(2373212-2373352)
chr4 (91-133)||(1517029-1517071)
chr4 (18-136)||(2467469-2467587)
chr4 (51-139)||(12126852-12126940)
[»] chr7 (1 HSPs)
chr7 (22-119)||(2576415-2576512)
[»] chr1 (1 HSPs)
chr1 (22-122)||(15837979-15838079)
[»] chr5 (1 HSPs)
chr5 (91-147)||(12846948-12847004)


Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 18 - 271
Target Start/End: Complemental strand, 2621281 - 2621028
Alignment:
Q  18 gatattagggaacctgtcgaagaggcgaggaatgaaagggatggttttatcggagattgtgatggagaaccgtagacggttggtgatggacaaaaactgt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2621281 gatattagggaacctgtcgaagaggcgaggaatgaaagggatggttttatcggagattgtgatggagaaccgtagacggttggtgatggacaaaaactgt 2621182  T
Q  118 ttggacacgagggagagaggttccaagtaatggttgttgtcgccgtcgtcaactaacttgaagatacactcccaccactcctctggtaagaatgaacatg 217  Q
    ||||| |||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2621181 ttggatacgagggagagaggttcccagtaatggttgttgtcgccatcgtcaactaacttgaagatacactcccaccactcctctggtaagaatgaacatg 2621082  T
Q  218 tttccgccattgtttttggaatattgaatgtcaatgattatgataatgatgatg 271  Q
    ||||||||||||||| |||||||||| |||||||| | ||||| ||||||||||    
T  2621081 tttccgccattgtttgtggaatattggatgtcaataactatgacaatgatgatg 2621028  T

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Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 25 - 166
Target Start/End: Complemental strand, 2367789 - 2367648
Alignment:
Q  25 gggaacctgtcgaagaggcgaggaatgaaagggatggttttatcggagattgtgatggagaaccgtagacggttggtgatggacaaaaactgtttggaca 124  Q
    |||||||| | ||| ||||||  || ||||||||| ||||||||||| ||||  |||||||| || ||||||||||||||||| | ||| |||||||| |    
T  2367789 gggaacctttggaaaaggcgataaaggaaagggattgttttatcggacattgctatggagaatcggagacggttggtgatggagagaaattgtttggaga 2367690  T
Q  125 cgagggagagaggttccaagtaatggttgttgtcgccgtcgt 166  Q
    ||| ||| ||||||||||||||  |||||||||||| |||||    
T  2367689 cgatggaaagaggttccaagtagcggttgttgtcgctgtcgt 2367648  T

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Target: chr4; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 21 - 136
Target Start/End: Original strand, 2486249 - 2486364
Alignment:
Q  21 attagggaacctgtcgaagaggcgaggaatgaaagggatggttttatcggagattgtgatggagaaccgtagacggttggtgatggacaaaaactgtttg 120  Q
    |||||||||||  |  ||||| ||| ||| ||||||||| ||||| |||||||||||||  ||||| || ||||||||||||||||||| |||||||||     
T  2486249 attagggaacccataaaagagacgatgaaggaaagggattgttttctcggagattgtgaccgagaatcggagacggttggtgatggacagaaactgtttt 2486348  T
Q  121 gacacgagggagagag 136  Q
    || |||||||||||||    
T  2486349 gagacgagggagagag 2486364  T

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Target: chr4; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 24 - 119
Target Start/End: Complemental strand, 5106428 - 5106333
Alignment:
Q  24 agggaacctgtcgaagaggcgaggaatgaaagggatggttttatcggagattgtgatggagaaccgtagacggttggtgatggacaaaaactgttt 119  Q
    ||||||||| | |||||||||| |||||||||||||||||| ||  | ||||||||  ||||| ||  ||||||||||||||||||||||||||||    
T  5106428 agggaaccttttgaagaggcgatgaatgaaagggatggtttgattagtgattgtgaccgagaatcgaggacggttggtgatggacaaaaactgttt 5106333  T

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Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 69 - 134
Target Start/End: Original strand, 2547522 - 2547587
Alignment:
Q  69 ggagattgtgatggagaaccgtagacggttggtgatggacaaaaactgtttggacacgagggagag 134  Q
    |||||||||||  |||||||| ||||||||||||||||||| |||||||||||| |||| ||||||    
T  2547522 ggagattgtgactgagaaccggagacggttggtgatggacagaaactgtttggagacgatggagag 2547587  T

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Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 25 - 146
Target Start/End: Original strand, 12124770 - 12124891
Alignment:
Q  25 gggaacctgtcgaagaggcgaggaatgaaagggatggttttatcggagattgtgatggagaaccgtagacggttggtgatggacaaaaactgtttggaca 124  Q
    |||||||| | |||||||||   || ||||||||| |||| ||| ||||||| |||||| ||  | ||||||||||||||||| | ||| |||||||| |    
T  12124770 gggaacctttggaagaggcggtcaaggaaagggattgtttcatcagagattgcgatggaaaattggagacggttggtgatggagagaaattgtttggaga 12124869  T
Q  125 cgagggagagaggttccaagta 146  Q
    | | ||||||||||||||||||    
T  12124870 caatggagagaggttccaagta 12124891  T

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Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 22 - 122
Target Start/End: Original strand, 2472035 - 2472135
Alignment:
Q  22 ttagggaacctgtcgaagaggcgaggaatgaaagggatggttttatcggagattgtgatggagaaccgtagacggttggtgatggacaaaaactgtttgg 121  Q
    ||||||||||| ||||||||| || ||| ||||||||| |||| |  | ||||||||| |||||| |  ||||| ||||||||||| |||||||||||||    
T  2472035 ttagggaacctttcgaagaggtgatgaaggaaagggattgtttcacagtagattgtgagggagaatcagagacgattggtgatggagaaaaactgtttgg 2472134  T
Q  122 a 122  Q
    |    
T  2472135 a 2472135  T

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Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 22 - 136
Target Start/End: Original strand, 2491071 - 2491185
Alignment:
Q  22 ttagggaacctgtcgaagaggcgaggaatgaaagggatggttttatcggagattgtgatggagaaccgtagacggttggtgatggacaaaaactgtttgg 121  Q
    ||||||||||| || ||||| |||  || ||||||||| |||  ||||||||||||||  || || || |||||||| |||||||||| ||||||||| |    
T  2491071 ttagggaacctttcaaagagacgattaaggaaagggattgttgcatcggagattgtgaccgaaaatcggagacggtttgtgatggacagaaactgttttg 2491170  T
Q  122 acacgagggagagag 136  Q
    | ||||| |||||||    
T  2491171 agacgagtgagagag 2491185  T

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Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 22 - 119
Target Start/End: Complemental strand, 5102203 - 5102106
Alignment:
Q  22 ttagggaacctgtcgaagaggcgaggaatgaaagggatggttttatcggagattgtgatggagaaccgtagacggttggtgatggacaaaaactgttt 119  Q
    ||||||||||| ||||| ||| ||||||||||||||||||||  ||| | ||||||||  ||||| || ||||  || ||||| ||||||||||||||    
T  5102203 ttagggaacctttcgaaaaggagaggaatgaaagggatggttcgatcagtgattgtgaccgagaatcgaagactattagtgatagacaaaaactgttt 5102106  T

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Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 119
Target Start/End: Original strand, 2519179 - 2519273
Alignment:
Q  25 gggaacctgtcgaagaggcgaggaatgaaagggatggttttatcggagattgtgatggagaaccgtagacggttggtgatggacaaaaactgttt 119  Q
    |||||||| || ||||| ||| ||| ||||||||| |||| ||| ||||||||||  ||| | || | ||||||||||||||||| |||||||||    
T  2519179 gggaacctatcaaagagacgatgaaggaaagggattgtttgatctgagattgtgactgaggatcgaaaacggttggtgatggacagaaactgttt 2519273  T

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Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 22 - 136
Target Start/End: Original strand, 2525700 - 2525814
Alignment:
Q  22 ttagggaacctgtcgaagaggcgaggaatgaaagggatggttttatcggagattgtgatggagaaccgtagacggttggtgatggacaaaaactgtttgg 121  Q
    ||||||||||| || ||||| |||  ||  |||||||| |||  || |||||||||||   |||| || |||| |||||||||||||| ||||||||| |    
T  2525700 ttagggaacctttcaaagagacgattaagaaaagggatagttgcattggagattgtgaccaagaatcgaagactgttggtgatggacagaaactgttttg 2525799  T
Q  122 acacgagggagagag 136  Q
    | |||||||||||||    
T  2525800 agacgagggagagag 2525814  T

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Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 166
Target Start/End: Complemental strand, 2373352 - 2373212
Alignment:
Q  25 gggaacctgtcgaagaggcgaggaatgaaagggatggttttatcggagattgtgatggagaaccgtagacggttggtgatggacaaaaactgtttggaca 124  Q
    |||||||| | ||||||||||  || |||||| || ||||||||| | ||||  |||||||| || ||| | ||||||||||| | ||| |||||||| |    
T  2373352 gggaacctttggaagaggcgattaaggaaaggaattgttttatcg-acattgctatggagaatcggagatgattggtgatggagagaaattgtttggaaa 2373254  T
Q  125 cgagggagagaggttccaagtaatggttgttgtcgccgtcgt 166  Q
    | | |||||||||||| |||||  || |||||| ||||||||    
T  2373253 caacggagagaggttcgaagtagcggctgttgttgccgtcgt 2373212  T

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Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 133
Target Start/End: Complemental strand, 1517071 - 1517029
Alignment:
Q  91 agacggttggtgatggacaaaaactgtttggacacgagggaga 133  Q
    |||||||||||||||||||| || |||||||| ||||||||||    
T  1517071 agacggttggtgatggacaagaattgtttggaaacgagggaga 1517029  T

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Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 136
Target Start/End: Original strand, 2467469 - 2467587
Alignment:
Q  18 gatattagggaacctgtcgaagaggcgaggaatgaaagggatggttttatcggagattgtgatggagaaccgtagacggttggtgatggacaaaaactgt 117  Q
    |||||| |||||||| || ||||| ||| |||  |||||||| |||   ||||| || | || |||||| || |||| |||||| |||||||||||||||    
T  2467469 gatattggggaacctttcaaagagacgatgaagtaaagggattgttccgtcggaaatcgagacggagaatcgaagactgttggtaatggacaaaaactgt 2467568  T
Q  118 ttggacacgagggagagag 136  Q
    || || |||| ||||||||    
T  2467569 tttgagacgacggagagag 2467587  T

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Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 139
Target Start/End: Original strand, 12126852 - 12126940
Alignment:
Q  51 gaaagggatggttttatcggagattgtgatggagaaccgtagacggttggtgatggacaaaaactgtttggacacgagggagagaggtt 139  Q
    |||||||||  ||| ||| |||| || |||||||||  | ||||||||||||||||| | ||| |||||||| || | |||||||||||    
T  12126852 gaaagggattttttcatctgagactgcgatggagaataggagacggttggtgatggagagaaattgtttggagacaatggagagaggtt 12126940  T

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Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 22 - 119
Target Start/End: Complemental strand, 2576512 - 2576415
Alignment:
Q  22 ttagggaacctgtcgaagaggcgaggaatgaaagggatggttttatcggagattgtgatggagaaccgtagacggttggtgatggacaaaaactgttt 119  Q
    ||||||| ||| ||||||||||||  ||||||||||||||||  ||||| ||||||||  ||||| || ||||| ||||||||||| |||||||||||    
T  2576512 ttagggatcctttcgaagaggcgacaaatgaaagggatggttcaatcggtgattgtgaccgagaatcgaagacgattggtgatggataaaaactgttt 2576415  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 22 - 122
Target Start/End: Complemental strand, 15838079 - 15837979
Alignment:
Q  22 ttagggaacctgtcgaagaggcgaggaatgaaagggatggttttatcggagattgtgatggagaaccgtagacggttggtgatggacaaaaactgtttgg 121  Q
    ||||||||||| | |||||||  ||||||||||||||| |||| |||   |||| ||| |||||| || ||||||||||||||||| | |||||||||||    
T  15838079 ttagggaacctttggaagaggttaggaatgaaagggattgtttgatctatgattttgagggagaatcggagacggttggtgatggagagaaactgtttgg 15837980  T
Q  122 a 122  Q
    |    
T  15837979 a 15837979  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 91 - 147
Target Start/End: Original strand, 12846948 - 12847004
Alignment:
Q  91 agacggttggtgatggacaaaaactgtttggacacgagggagagaggttccaagtaa 147  Q
    ||||||||||||||||| |  ||||| ||||| |||||||||||| |||||||||||    
T  12846948 agacggttggtgatggagaggaactgcttggaaacgagggagagatgttccaagtaa 12847004  T

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