View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5875_low_3 (Length: 493)
Name: NF5875_low_3
Description: NF5875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5875_low_3 |
 | |
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| [»] scaffold0451 (1 HSPs) |
| | |
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| [»] scaffold0638 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 394; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 21 - 478
Target Start/End: Original strand, 27411690 - 27412147
Alignment:
| Q |
21 |
gtttctcttgcttttctttggcaatggggaaacagaaacaaagtaaagggattgcctccaggtcccgtagggttgccgattttgggtagccttctcaagt |
120 |
Q |
| |
|
||||||||||||||| ||| ||||||| |||||| || ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27411690 |
gtttctcttgcttttttttcgcaatggagaaacatgaataaagtaaagagattgcctccaggtcccgtagggttgccgattttgggtagccttctcaagt |
27411789 |
T |
|
| Q |
121 |
taggggcaaaccctcatcttgatctacacaaactatcccaaaaatatggaccaatcatgcacttgcgcttaggtttaaaaccaaccatagttgtttcttc |
220 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
27411790 |
taggggcaaaccctcatcttgatctacacaaactatcccaaaaatatggaccaataatgcacttgcgcttaggtttagtaccaaccatagttgtttcttc |
27411889 |
T |
|
| Q |
221 |
acctcaagctgctgaacttttcctcaagactcatgatcttgtctttgctagtagaccacctattgaggcagcacaactcatgttttataatcagaaagat |
320 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||| |
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|
| T |
27411890 |
acctcaagctgctgaactcttcctcaagactcatgatattgtctttgcaagtagaccacctattgaggcagcacaactcatgttttacaatcagaaggat |
27411989 |
T |
|
| Q |
321 |
gtgagcttcagtgtatatggttcgtattggcgaaacatgcgcaagatgtgcacattagaattgttgagccatacaaaaatcaacagttttagaagtatga |
420 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27411990 |
gtgagcttcagtgtatacggttcgtattggcgaaacatgcgcaagatgtgcacattagaattgttgagccatacaaaaatcaacagttttagaagtatga |
27412089 |
T |
|
| Q |
421 |
gggaacaagagcttgacctattgatcaagtttataagagaagcagccaatgatggaac |
478 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27412090 |
gggaacaagagcttgacctattgatcaagtttataagagaagcagccaatgatggaac |
27412147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0451 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: scaffold0451
Description:
Target: scaffold0451; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 21 - 478
Target Start/End: Complemental strand, 8992 - 8535
Alignment:
| Q |
21 |
gtttctcttgcttttctttggcaatggggaaacagaaacaaagtaaagggattgcctccaggtcccgtagggttgccgattttgggtagccttctcaagt |
120 |
Q |
| |
|
||||||||||||| |||||||| |||||||||| || |||||||||||||||||||||||||| ||| |||| |||||||||||||||||||||| |
|
|
| T |
8992 |
gtttctcttgcttgtctttggctatggggaaacgagaataaagtaaagggattgcctccaggtccaaaaggagtgccaattttgggtagccttctcaagt |
8893 |
T |
|
| Q |
121 |
taggggcaaaccctcatcttgatctacacaaactatcccaaaaatatggaccaatcatgcacttgcgcttaggtttaaaaccaaccatagttgtttcttc |
220 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
8892 |
taggggcaaaccctcatcttgatctacacaaactatcccaaaaatatggaccaatcatgcacttgcgcttaggtttagtaccaaccatagttgtttcttc |
8793 |
T |
|
| Q |
221 |
acctcaagctgctgaacttttcctcaagactcatgatcttgtctttgctagtagaccacctattgaggcagcacaactcatgttttataatcagaaagat |
320 |
Q |
| |
|
|||||||||||||||||| || ||||||||||||||| |||||||||| |||||||||||||||||||||| | || ||||||||||||||||||| ||| |
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|
| T |
8792 |
acctcaagctgctgaactctttctcaagactcatgattttgtctttgcaagtagaccacctattgaggcagtataattcatgttttataatcagaaggat |
8693 |
T |
|
| Q |
321 |
gtgagcttcagtgtatatggttcgtattggcgaaacatgcgcaagatgtgcacattagaattgttgagccatacaaaaatcaacagttttagaagtatga |
420 |
Q |
| |
|
|| |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |
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|
| T |
8692 |
gttagcttcagtgtatacggttcatattggcgaaacatgcgcaagatgtgcacattagaattgttgagccattcaaaaatcaacagttttagaattatga |
8593 |
T |
|
| Q |
421 |
gggaacaagagcttgacctattgatcaagtttataagagaagcagccaatgatggaac |
478 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8592 |
gggaacaagagcttgacctattgatcaagtttataagagaagcagccaatgatggaac |
8535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0638 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: scaffold0638
Description:
Target: scaffold0638; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 18 - 478
Target Start/End: Original strand, 4486 - 4944
Alignment:
| Q |
18 |
cttgtttctcttgcttttctttggcaatggggaaacagaaacaaagtaaagggattgcctccaggtcccgtagggttgccgattttgggtagccttctca |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||| || ||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
4486 |
cttgtttctcttgcttttctttggcaatggagaaacatgaataaagtaaagagattgcctccaggtcccgtagggttgccaattttgggtagccttctca |
4585 |
T |
|
| Q |
118 |
agttaggggcaaaccctcatcttgatctacacaaactatcccaaaaatatggaccaatcatgcacttgcgcttaggtttaaaaccaaccatagttgtttc |
217 |
Q |
| |
|
|||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
4586 |
agttaggggcaaaccctcatcttgatttgcacaaactatcccaaaaatatggaccaatcatgcacttgcgcttaggtttagtaccaaccatagttgtttc |
4685 |
T |
|
| Q |
218 |
ttcacctcaagctgctgaacttttcctcaagactcatgatcttgtctttgctagtagaccacctattgaggcagcacaactcatgttttataatcagaaa |
317 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| |||||||| | ||||||||||||||||||||||| |
|
|
| T |
4686 |
ttcacctcaagctgctgaactcttcctcaagactcatgatcttctctttgctagtagaccaccttctgaggcaggaaaactcatgttttataatcagaaa |
4785 |
T |
|
| Q |
318 |
gatgtgagcttcagtgtatatggttcgtattggcgaaacatgcgcaagatgtgcacattagaattgttgagccatacaaaaatcaacagttttagaagta |
417 |
Q |
| |
|
|||||||| ||||||||||| ||||| |||||||||||||||| |||||||||||| |||||||||||||||||| |||||||||| ||||||||||| | |
|
|
| T |
4786 |
gatgtgagtttcagtgtatacggttcttattggcgaaacatgcacaagatgtgcacgttagaattgttgagccattcaaaaatcaatagttttagaagca |
4885 |
T |
|
| Q |
418 |
tgagggaacaagagcttgacctattgatcaagtttataagagaagcagccaatgatggaac |
478 |
Q |
| |
|
||||| ||| |||||||||||||||||||||||||| | ||||||||||||||||||||| |
|
|
| T |
4886 |
tgaggaaac--gagcttgacctattgatcaagtttatgaaagaagcagccaatgatggaac |
4944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 141; Significance: 1e-73; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 21 - 445
Target Start/End: Original strand, 38261656 - 38262080
Alignment:
| Q |
21 |
gtttctcttgcttttctttggcaatggggaaacagaaacaaagtaaagggattgcctccaggtcccgtagggttgccgattttgggtagccttctcaagt |
120 |
Q |
| |
|
||||||||||| ||||| || ||||||||||| | ||||| |||| ||| || |||||||| ||| || || ||||| || |||||||| || | |
|
|
| T |
38261656 |
gtttctcttgcctttctactgctatggggaaacaagaccaaagcaaagaaattaccaccaggtccaaaaggattaccaattttaggcagccttctaaaat |
38261755 |
T |
|
| Q |
121 |
taggggcaaaccctcatcttgatctacacaaactatcccaaaaatatggaccaatcatgcacttgcgcttaggtttaaaaccaaccatagttgtttcttc |
220 |
Q |
| |
|
|||| ||||||||||||| |||||| ||| |||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| || |
|
|
| T |
38261756 |
taggtgcaaaccctcatcgtgatcttcaccaactatcccaaaaatatggaccaatcatgcacttacgcttaggtttaataccaaccatagttgtttcatc |
38261855 |
T |
|
| Q |
221 |
acctcaagctgctgaacttttcctcaagactcatgatcttgtctttgctagtagaccacctattgaggcagcacaactcatgttttataatcagaaagat |
320 |
Q |
| |
|
||||||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||| | ||||||| || | || | || | |||| | |
|
|
| T |
38261856 |
acctcaagcagctgaacttttcctcaaaactcatgatcttgtctttgcaagtagaccacctcatttggcagcaaaaataatctcttgggaccagaggaac |
38261955 |
T |
|
| Q |
321 |
gtgagcttcagtgtatatggttcgtattggcgaaacatgcgcaagatgtgcacattagaattgttgagccatacaaaaatcaacagttttagaagtatga |
420 |
Q |
| |
|
|||| || ||| ||||||||| ||||||||||| ||| | || |||||||| |||||||||||||||||| ||||||| || |||| || |||| |
|
|
| T |
38261956 |
ttgagttttggtgaatatggttcttattggcgaaatatgagaaaaatgtgcactttagaattgttgagccatgcaaaaataaattcatttaaaaccatga |
38262055 |
T |
|
| Q |
421 |
gggaacaagagcttgacctattgat |
445 |
Q |
| |
|
|||||||||| |||||||||||||| |
|
|
| T |
38262056 |
gggaacaagaacttgacctattgat |
38262080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 127 - 461
Target Start/End: Original strand, 38258005 - 38258340
Alignment:
| Q |
127 |
caaaccctcatcttgatctacacaaactatcccaaaaatatggaccaatcatgcacttgcgcttaggtttaaaaccaaccatagttgtttcttcacctca |
226 |
Q |
| |
|
|||||||||||| |||||| ||||||||||||||||||||||||||||| |||||||| || ||||||||| ||||| ||||||||||||||||||||| |
|
|
| T |
38258005 |
caaaccctcatcgtgatcttcacaaactatcccaaaaatatggaccaattatgcacttacgtttaggtttagtaccaatcatagttgtttcttcacctca |
38258104 |
T |
|
| Q |
227 |
agctgctgaacttttcctcaagactcatgatcttgtctttgctagtagaccacctattgaggcagc-acaactcatgttttataatcagaaagatgtgag |
325 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||| || |||||||| ||||||||||| | || |||| || ||| || | |||| |
|
|
| T |
38258105 |
agcagctgaacttttcctcaagactcatgatcttgtctttgcaagcagaccaccaattgaggcagcaaaaaatcatcggttgggatcggaggaacttgag |
38258204 |
T |
|
| Q |
326 |
cttcagtgtatatggttcgtattggcgaaacatgcgcaagatgtgcacattagaattgttgagccatacaaaaatcaacagttttagaagtatgagggaa |
425 |
Q |
| |
|
|| ||| ||||||||| ||||||||||||||| | || |||||||| |||||||||||||||||| ||||||| || |||| || ||||||||| |
|
|
| T |
38258205 |
ttttggtgaatatggttcttattggcgaaacatgagaaaaatgtgcactttagaattgttgagccatgcaaaaataaattcatttaaaaccatgagggaa |
38258304 |
T |
|
| Q |
426 |
caagagcttgacctattgatcaagtttataagagaa |
461 |
Q |
| |
|
||||| |||||||||||||| |||||| |||||||| |
|
|
| T |
38258305 |
caagaacttgacctattgataaagtttttaagagaa |
38258340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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