View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5875_low_36 (Length: 244)

Name: NF5875_low_36
Description: NF5875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5875_low_36
NF5875_low_36
[»] chr5 (7 HSPs)
chr5 (1-227)||(34232428-34232654)
chr5 (14-220)||(41713196-41713402)
chr5 (14-213)||(41571658-41571857)
chr5 (1-220)||(42129131-42129350)
chr5 (57-222)||(34240227-34240392)
chr5 (59-222)||(42118007-42118170)
chr5 (33-184)||(42123782-42123933)
[»] chr2 (2 HSPs)
chr2 (78-184)||(12248744-12248850)
chr2 (135-222)||(11994136-11994223)
[»] chr6 (2 HSPs)
chr6 (57-184)||(25522713-25522840)
chr6 (72-184)||(24141113-24141225)
[»] chr3 (1 HSPs)
chr3 (91-222)||(8523352-8523483)
[»] chr4 (1 HSPs)
chr4 (72-184)||(11118427-11118539)


Alignment Details
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 34232428 - 34232654
Alignment:
Q  1 taacttactggaaggtgatatctctttgtcgatttgcagtatgaaatcacttcgaattctcaacttggcgcacaacaaattgaccggtatcattccacaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  34232428 taacttactggaaggtgatatctctttgtcgatttgcagtatgaaatcacttcgatttctcaacttggcgcacaacaaattgaccggtatcattccacaa 34232527  T
Q  101 tatcttgctaatttatcatcccttcaagtcttggatctacaaatgaatagattttatggcgctttgccaagtaacttctcaaagtacagtgaccttcgga 200  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34232528 tatcttgctaatttatcatccctacaagtcttggatctacaaatgaatagattttatggcgctttgccaagtaacttctcaaagtacagtgaccttcgga 34232627  T
Q  201 gtctgaatctcaatggcaaccatatag 227  Q
    |||||||||||||||||||||||||||    
T  34232628 gtctgaatctcaatggcaaccatatag 34232654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 14 - 220
Target Start/End: Original strand, 41713196 - 41713402
Alignment:
Q  14 ggtgatatctctttgtcgatttgcagtatgaaatcacttcgaattctcaacttggcgcacaacaaattgaccggtatcattccacaatatcttgctaatt 113  Q
    ||||| |||| | |||| ||||||| |||||  |||||  || |||||||||||||  ||||||||||||| |||| ||||||||||| |||||||||||    
T  41713196 ggtgaaatctttgtgtcaatttgcaatatgagttcactgggatttctcaacttggcaaacaacaaattgactggtaccattccacaatgtcttgctaatt 41713295  T
Q  114 tatcatcccttcaagtcttggatctacaaatgaatagattttatggcgctttgccaagtaacttctcaaagtacagtgaccttcggagtctgaatctcaa 213  Q
    |||||| |||| |||| ||||||||||||||||| | |||||||||| |||||||||||||||| |||||| ||||||| ||||  | ||| |||||| |    
T  41713296 tatcataccttgaagttttggatctacaaatgaacaaattttatggcactttgccaagtaacttttcaaaggacagtgagcttcatactctaaatctcta 41713395  T
Q  214 tggcaac 220  Q
    |||||||    
T  41713396 tggcaac 41713402  T

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Target: chr5; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 14 - 213
Target Start/End: Original strand, 41571658 - 41571857
Alignment:
Q  14 ggtgatatctctttgtcgatttgcagtatgaaatcacttcgaattctcaacttggcgcacaacaaattgaccggtatcattccacaatatcttgctaatt 113  Q
    ||||| ||||||| ||| ||||||| ||  |  ||||||| | | ||||||||||| |||||||||||||| || | ||||||||| | |||||| || |    
T  41571658 ggtgacatctcttcgtcaatttgcaatagaacttcacttcaattgctcaacttggcacacaacaaattgacaggcaccattccacattgtcttgcaaact 41571757  T
Q  114 tatcatcccttcaagtcttggatctacaaatgaatagattttatggcgctttgccaagtaacttctcaaagtacagtgaccttcggagtctgaatctcaa 213  Q
    |||||||||||||||| |||||| |||||||||| | |||||||||| |||| ||||||||||| ||||||||| |||||||||| | ||||||| ||||    
T  41571758 tatcatcccttcaagttttggatttacaaatgaacaaattttatggcactttaccaagtaacttttcaaagtactgtgaccttcgtactctgaatttcaa 41571857  T

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Target: chr5; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 42129350 - 42129131
Alignment:
Q  1 taacttactggaaggtgatatctctttgtcgatttgcagtatgaaatcacttcgaattctcaacttggcgcacaacaaattgaccggtatcattccacaa 100  Q
    |||||||||||  |||||  |||||  ||| ||||||| | |||  ||||||| | | ||||||||||| |||||  | ||||| | |||||||||||||    
T  42129350 taacttactggctggtgacctctctgagtcaatttgcaatttgagttcacttcaattactcaacttggcacacaatcatttgacagatatcattccacaa 42129251  T
Q  101 tatcttgctaatttatcatcccttcaagtcttggatctacaaatgaatagattttatggcgctttgccaagtaacttctcaaagtacagtgaccttcgga 200  Q
    | ||||||||||| ||| | ||||||||| |||||| | ||||||||||||||||||||  |||||||||||||||| ||| ||||| |||| |||| ||    
T  42129250 tgtcttgctaattcatcgttccttcaagttttggatttgcaaatgaatagattttatggaactttgccaagtaacttttcagagtactgtgagcttcaga 42129151  T
Q  201 gtctgaatctcaatggcaac 220  Q
     ||| |||||| ||||||||    
T  42129150 ctctaaatctccatggcaac 42129131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 57 - 222
Target Start/End: Original strand, 34240227 - 34240392
Alignment:
Q  57 ttctcaacttggcgcacaacaaattgaccggtatcattccacaatatcttgctaatttatcatcccttcaagtcttggatctacaaatgaatagatttta 156  Q
    ||||||||||||  |||||||| || || |||| ||||||||||| ||||||||||||| ||||||||||| | ||||||||||||||||| |  |||||    
T  34240227 ttctcaacttgggacacaacaatttcacaggtaacattccacaatgtcttgctaatttaccatcccttcaaattttggatctacaaatgaacaactttta 34240326  T
Q  157 tggcgctttgccaagtaacttctcaaagtacagtgaccttcggagtctgaatctcaatggcaacca 222  Q
    |||| ||||||| | |||||| ||||||| |||| | |||   | |||||||||||||| ||||||    
T  34240327 tggcactttgcctaataacttttcaaagtccagtaaacttattactctgaatctcaatgacaacca 34240392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 59 - 222
Target Start/End: Complemental strand, 42118170 - 42118007
Alignment:
Q  59 ctcaacttggcgcacaacaaattgaccggtatcattccacaatatcttgctaatttatcatcccttcaagtcttggatctacaaatgaatagattttatg 158  Q
    ||||||||||| |||||  ||||||| |  ||||||||||||| ||||||||||| ||||  ||||||||| |||||| | |||||||||||||||||||    
T  42118170 ctcaacttggcacacaatcaattgacagacatcattccacaatgtcttgctaattcatcaatccttcaagttttggatttgcaaatgaatagattttatg 42118071  T
Q  159 gcgctttgccaagtaacttctcaaagtacagtgaccttcggagtctgaatctcaatggcaacca 222  Q
    |  |||||||||||||||| ||| || || |||  |||| || ||| |||||| ||||||||||    
T  42118070 gaactttgccaagtaacttttcagaggactgtgtgcttcagactctaaatctccatggcaacca 42118007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 33 - 184
Target Start/End: Complemental strand, 42123933 - 42123782
Alignment:
Q  33 tttgcagtatgaaatcacttcgaattctcaacttggcgcacaacaaattgaccggtatcattccacaatatcttgctaatttatcatcccttcaagtctt 132  Q
    |||||| |||||  ||||||| | ||||||||||||   ||||| | ||||| |||||||||||||||| | ||||| | | | ||||||||||||| ||    
T  42123933 tttgcaatatgagttcacttcaatttctcaacttgggttacaacgatttgactggtatcattccacaatgttttgctgaatcaccatcccttcaagtttt 42123834  T
Q  133 ggatctacaaatgaatagattttatggcgctttgccaagtaacttctcaaag 184  Q
    | ||||||||||||| |  ||||||||  |||||||||||||||| ||||||    
T  42123833 gaatctacaaatgaacatgttttatggtactttgccaagtaacttttcaaag 42123782  T

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Target: chr2 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 78 - 184
Target Start/End: Complemental strand, 12248850 - 12248744
Alignment:
Q  78 aattgaccggtatcattccacaatatcttgctaatttatcatcccttcaagtcttggatctacaaatgaatagattttatggcgctttgccaagtaactt 177  Q
    ||||||| |||||||||||||||| ||||||| ||||||||||||||||||| ||| ||||||||||||| | |||| ||||| ||||||||||||||||    
T  12248850 aattgacaggtatcattccacaatgtcttgctgatttatcatcccttcaagttttgaatctacaaatgaacaaatttcatggcactttgccaagtaactt 12248751  T
Q  178 ctcaaag 184  Q
    |||||||    
T  12248750 ctcaaag 12248744  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 135 - 222
Target Start/End: Original strand, 11994136 - 11994223
Alignment:
Q  135 atctacaaatgaatagattttatggcgctttgccaagtaacttctcaaagtacagtgaccttcggagtctgaatctcaatggcaacca 222  Q
    ||||||||||||| | || | ||||| ||||||||||||||||||||||| | ||||  |||  || |||||||||| ||||||||||    
T  11994136 atctacaaatgaacacatgtcatggcactttgccaagtaacttctcaaaggagagtgcacttgagactctgaatctctatggcaacca 11994223  T

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Target: chr6 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 57 - 184
Target Start/End: Original strand, 25522713 - 25522840
Alignment:
Q  57 ttctcaacttggcgcacaacaaattgaccggtatcattccacaatatcttgctaatttatcatcccttcaagtcttggatctacaaatgaatagatttta 156  Q
    ||||||||||||   ||||||| ||||| |||||||||||||||| ||||||| | | | ||||||||||||| ||| |||||||||||||||||||| |    
T  25522713 ttctcaacttgggatacaacaatttgactggtatcattccacaatgtcttgctgaatcaacatcccttcaagttttgaatctacaaatgaatagatttca 25522812  T
Q  157 tggcgctttgccaagtaacttctcaaag 184  Q
    |||| |||||||||||||||| ||||||    
T  25522813 tggcactttgccaagtaacttttcaaag 25522840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 72 - 184
Target Start/End: Complemental strand, 24141225 - 24141113
Alignment:
Q  72 acaacaaattgaccggtatcattccacaatatcttgctaatttatcatcccttcaagtcttggatctacaaatgaatagattttatggcgctttgccaag 171  Q
    ||||||| |||||||||||||||||||||| |||| || ||| | ||||||||| ||| ||| |||||||||| || | |||| ||||| ||||||||||    
T  24141225 acaacaatttgaccggtatcattccacaatgtctttctgattcaccatcccttcgagttttgaatctacaaatcaacacatttcatggcactttgccaag 24141126  T
Q  172 taacttctcaaag 184  Q
    |||||| ||||||    
T  24141125 taacttttcaaag 24141113  T

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Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 91 - 222
Target Start/End: Complemental strand, 8523483 - 8523352
Alignment:
Q  91 cattccacaatatcttgctaatttatcatcccttcaagtcttggatctacaaatgaatagattttatggcgctttgccaagtaacttctcaaagtacagt 190  Q
    ||||||||||| ||||||||||||||||| |||| |||| ||||||||||||||||| | |||| ||||  |||||||||||||||| |||||  | |||    
T  8523483 cattccacaatgtcttgctaatttatcataccttgaagttttggatctacaaatgaacaaatttcatggaactttgccaagtaacttttcaaaagaaagt 8523384  T
Q  191 gaccttcggagtctgaatctcaatggcaacca 222  Q
    || |||  || |||||||||| ||||||||||    
T  8523383 gaacttgagactctgaatctctatggcaacca 8523352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 72 - 184
Target Start/End: Complemental strand, 11118539 - 11118427
Alignment:
Q  72 acaacaaattgaccggtatcattccacaatatcttgctaatttatcatcccttcaagtcttggatctacaaatgaatagattttatggcgctttgccaag 171  Q
    ||||||| ||||| ||| |||||||||||| ||||||| | | | ||| |||| | || ||| ||||||||||||| | |||| ||||| ||||||| ||    
T  11118539 acaacaatttgactggtgtcattccacaatgtcttgctgaatcaccattcctttatgttttgaatctacaaatgaacaaatttcatggcactttgcctag 11118440  T
Q  172 taacttctcaaag 184  Q
    |||||| ||||||    
T  11118439 taacttttcaaag 11118427  T

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