View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5875_low_39 (Length: 242)
Name: NF5875_low_39
Description: NF5875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5875_low_39 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 226; Significance: 1e-125; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 17 - 242
Target Start/End: Original strand, 13028872 - 13029097
Alignment:
| Q |
17 |
aatctagacaacctcttcactgacaattgttcttaatcttatgataggatattgatgcaattgcagtgtcagatcagaaagcagaatttcacatgcattg |
116 |
Q |
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| T |
13028872 |
aatctagacaacctcttcactgacaattgttcttaatcttatgataggatattgatgcaattgcagtgtcagatcagaaagcagaatttcacatgcattg |
13028971 |
T |
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| Q |
117 |
tctttggataagattagaaagtaaaattcctaaaaacaggattagacattaacaattgtcattatcttttctaactaatccaaccgtcattttcattaac |
216 |
Q |
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| T |
13028972 |
tctttggataagattagaaagtaaaattcctaaaaacaggattagacattaacaattgtcattatcttttctaactaatccaaccgtcattttcattaac |
13029071 |
T |
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| Q |
217 |
taattaattgagctaacagctcttac |
242 |
Q |
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| T |
13029072 |
taattaattgagctaacagctcttac |
13029097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 17 - 242
Target Start/End: Original strand, 13099052 - 13099277
Alignment:
| Q |
17 |
aatctagacaacctcttcactgacaattgttcttaatcttatgataggatattgatgcaattgcagtgtcagatcagaaagcagaatttcacatgcattg |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13099052 |
aatctagacaacctcttcactgacaattgttcttaatcttatgataggatattgatgcaattgcagtgtcagatcagaaagcagaatttcacatgcattg |
13099151 |
T |
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| Q |
117 |
tctttggataagattagaaagtaaaattcctaaaaacaggattagacattaacaattgtcattatcttttctaactaatccaaccgtcattttcattaac |
216 |
Q |
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| T |
13099152 |
tctttggataagattagaaagtaaaattcctaaaaacaggattagacattaacaattgtcattatcttttctaactaatccaaccgtcattttcattaac |
13099251 |
T |
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| Q |
217 |
taattaattgagctaacagctcttac |
242 |
Q |
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| T |
13099252 |
taattaattgagctaacagctcttac |
13099277 |
T |
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