View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5875_low_4 (Length: 484)

Name: NF5875_low_4
Description: NF5875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5875_low_4
NF5875_low_4
[»] chr3 (4 HSPs)
chr3 (16-473)||(42534175-42534648)
chr3 (285-466)||(42539020-42539204)
chr3 (105-139)||(31766163-31766197)
chr3 (105-139)||(44771863-44771897)
[»] chr5 (1 HSPs)
chr5 (103-139)||(29923035-29923071)
[»] chr7 (1 HSPs)
chr7 (105-139)||(34536773-34536807)
[»] chr4 (3 HSPs)
chr4 (105-134)||(24364108-24364137)
chr4 (105-138)||(43868272-43868305)
chr4 (152-184)||(51093284-51093316)
[»] chr1 (3 HSPs)
chr1 (147-184)||(4411292-4411329)
chr1 (105-138)||(34730859-34730892)
chr1 (102-139)||(44045110-44045147)


Alignment Details
Target: chr3 (Bit Score: 417; Significance: 0; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 16 - 473
Target Start/End: Complemental strand, 42534648 - 42534175
Alignment:
Q  16 ccatcatcgctattcgtgctgatatcgatggactccctttgcaggttacccctttttagctccttaagtgtgtgtttggtagtgataaatgattttgaat 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42534648 ccatcatcgctattcgtgctgatatcgatggactccctttgcaggttacccctttttagctccttaagtgtgtgtttggtagtgataaatgattttgaat 42534549  T
Q  116 gaattgattatgtaaaattaatttctgctat----------------aatttaaggctaaaaaacaattgtagaggcaaaagctctgaatgctagttacc 199  Q
    |||||||||||||||||||||||||||||||                |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42534548 gaattgattatgtaaaattaatttctgctatgagtgagttgtacataaatttaaggctaaaaaacaattgtagaggcaaaagctctgaatgctagttacc 42534449  T
Q  200 ttagaatcaattctagttgttgaaccaaacatacactgttcttatgctccttgaggagaatattgtttttcaaataaggtaatattttttatctgatgtt 299  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42534448 ttagaatcaattctagttattgaaccaaacatacactgttcttatgctccttgaggagaatattgtttttcaaataaggtaatattttttatctgatgtt 42534349  T
Q  300 ggtgatgcttggttaggaacttgttgagtgggaatacaagagcaaaattgatggcagaatgcatgcttgtggacatgatgctcatgctactatgctatta 399  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42534348 ggtgatgcttggttaggaacttgttgagtgggaatacaagagcaaaattgatggcagaatgcatgcttgtggacatgatgctcatgctactatgctatta 42534249  T
Q  400 ggggctgcaaagttgctcaatcagcgcaaagataagcttaaggttcttttcaaattgtctgtttctgtattctt 473  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42534248 ggggctgcaaagttgctcaatcagcgcaaagataagcttaaggttcttttcaaattgtctgtttctgtattctt 42534175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 285 - 466
Target Start/End: Complemental strand, 42539204 - 42539020
Alignment:
Q  285 tttttatctgatgttggtgatgcttggttaggaactt---gttgagtgggaatacaagagcaaaattgatggcagaatgcatgcttgtggacatgatgct 381  Q
    |||| |||||||||   |||||||||||||||| |||   | |||||| |||| |||||||||| || ||||||||||||||||||||||| ||||||||    
T  42539204 ttttgatctgatgtctttgatgcttggttaggagcttagtgatgagtgagaattcaagagcaaagttaatggcagaatgcatgcttgtggagatgatgct 42539105  T
Q  382 catgctactatgctattaggggctgcaaagttgctcaatcagcgcaaagataagcttaaggttcttttcaaattgtctgtttctg 466  Q
    ||||||||||||||| | |||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| | ||||||||    
T  42539104 catgctactatgctacttggggctgcaaagttgctcaatcggcgcaaaaataagcttaaggttcttttcaaattatttgtttctg 42539020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 105 - 139
Target Start/End: Original strand, 31766163 - 31766197
Alignment:
Q  105 tgattttgaatgaattgattatgtaaaattaattt 139  Q
    |||||||||||||||||||| ||||||||||||||    
T  31766163 tgattttgaatgaattgattttgtaaaattaattt 31766197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 105 - 139
Target Start/End: Complemental strand, 44771897 - 44771863
Alignment:
Q  105 tgattttgaatgaattgattatgtaaaattaattt 139  Q
    |||||||||||||||||||||||||||||| ||||    
T  44771897 tgattttgaatgaattgattatgtaaaattgattt 44771863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 103 - 139
Target Start/End: Complemental strand, 29923071 - 29923035
Alignment:
Q  103 aatgattttgaatgaattgattatgtaaaattaattt 139  Q
    |||||||||||||||||||||||||||||||| ||||    
T  29923071 aatgattttgaatgaattgattatgtaaaattgattt 29923035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 105 - 139
Target Start/End: Complemental strand, 34536807 - 34536773
Alignment:
Q  105 tgattttgaatgaattgattatgtaaaattaattt 139  Q
    |||||||||||||||||||||| ||||||||||||    
T  34536807 tgattttgaatgaattgattatataaaattaattt 34536773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 105 - 134
Target Start/End: Original strand, 24364108 - 24364137
Alignment:
Q  105 tgattttgaatgaattgattatgtaaaatt 134  Q
    ||||||||||||||||||||||||||||||    
T  24364108 tgattttgaatgaattgattatgtaaaatt 24364137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 105 - 138
Target Start/End: Complemental strand, 43868305 - 43868272
Alignment:
Q  105 tgattttgaatgaattgattatgtaaaattaatt 138  Q
    |||||||||||||||||||| |||||||||||||    
T  43868305 tgattttgaatgaattgattttgtaaaattaatt 43868272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 152 - 184
Target Start/End: Complemental strand, 51093316 - 51093284
Alignment:
Q  152 aaggctaaaaaacaattgtagaggcaaaagctc 184  Q
    ||||||||||| |||||||||||||||||||||    
T  51093316 aaggctaaaaatcaattgtagaggcaaaagctc 51093284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 147 - 184
Target Start/End: Complemental strand, 4411329 - 4411292
Alignment:
Q  147 aatttaaggctaaaaaacaattgtagaggcaaaagctc 184  Q
    |||| ||||||||||| |||||||||||||||||||||    
T  4411329 aattcaaggctaaaaatcaattgtagaggcaaaagctc 4411292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 105 - 138
Target Start/End: Complemental strand, 34730892 - 34730859
Alignment:
Q  105 tgattttgaatgaattgattatgtaaaattaatt 138  Q
    |||||||||||||||||||||| |||||||||||    
T  34730892 tgattttgaatgaattgattatttaaaattaatt 34730859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 102 - 139
Target Start/End: Complemental strand, 44045147 - 44045110
Alignment:
Q  102 aaatgattttgaatgaattgattatgtaaaattaattt 139  Q
    ||||||||||||||| ||||||||||| ||||||||||    
T  44045147 aaatgattttgaatggattgattatgtgaaattaattt 44045110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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