View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5875_low_43 (Length: 239)
Name: NF5875_low_43
Description: NF5875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5875_low_43 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 213; Significance: 1e-117; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 7 - 239
Target Start/End: Complemental strand, 54479588 - 54479357
Alignment:
| Q |
7 |
caaagggtctgggatgatcaagttgtttgcaagagtccaagataagttaaataaagaactctattcttggcacctgattcatgattcttggtgtgtttgc |
106 |
Q |
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| T |
54479588 |
caaagggtctgggatgatcaagttgtttgca-gagtccaagataagttaaataaagaactctattcttggcacctgattcatgattcttggtgtgtttgc |
54479490 |
T |
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| Q |
107 |
agaaatacttcagctgtttacgcgtgcagcagccaagcatttgtcctaataacagaaacagccagttgatactccgtttcttgtcagcaattaccgactt |
206 |
Q |
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| T |
54479489 |
agaaatacttcagctgtttacgcgtgcagcagccaagcatttgtcctaataacagaaacagccagttgatactccgtttcttgtcagcaattaccggctt |
54479390 |
T |
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| Q |
207 |
caaactgttttgttgattacagtgcaaacaatt |
239 |
Q |
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| T |
54479389 |
cacactgttttgttgattacagtgcacacaatt |
54479357 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 22 - 217
Target Start/End: Original strand, 25044311 - 25044505
Alignment:
| Q |
22 |
gatcaagttgtttgcaagagtccaagataagttaaataaagaactctattcttggcacctgattcatgattcttggtgtgtttgcagaaatacttcagct |
121 |
Q |
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| T |
25044311 |
gatcaagttgtttgcat-agttcaagataagttaaataaagaaccctatttttggcacctgttctatgatggttgttatacttgcaaaaatacttcaatt |
25044409 |
T |
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| Q |
122 |
gtttacgcgtgcagcagccaagcatttgtcctaataacagaaacagccagttgatactccgtttcttgtcagcaattaccgacttcaaactgtttt |
217 |
Q |
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| T |
25044410 |
gtttaagattgcaacaacccagcatttgtcccaacagcagaaacaaccaattgatattcttcttcttctcggcaattatcggcttcacactgtttt |
25044505 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 80
Target Start/End: Original strand, 25040598 - 25040630
Alignment:
| Q |
48 |
ataagttaaataaagaactctattcttggcacc |
80 |
Q |
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| T |
25040598 |
ataagtcaaataaagaactctattcttggcacc |
25040630 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 22 - 224
Target Start/End: Original strand, 10124187 - 10124388
Alignment:
| Q |
22 |
gatcaagttgtttgcaagagtccaagataagttaaataaagaactctattcttggcacctgattcatgattcttggtgtgtttgcagaaatacttcagct |
121 |
Q |
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| T |
10124187 |
gatcaagttgtttgcaa-agttcaagataagttaaataaagaaccctattcttggcaccggttcgatgatggctattatacttgcaaaaatatttcaatt |
10124285 |
T |
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| Q |
122 |
gtttacgcgtgcagcagccaagcatttgtcctaataacagaaacagccagttgatactccgtttcttgtcagcaattaccgacttcaaactgttttgttg |
221 |
Q |
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| T |
10124286 |
gttcaagcttacaacaaccaagcatttgtcctagcaacagaaacaaccaattgatattctttttcttctcagcaattaccggtttcacacagttttcttg |
10124385 |
T |
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| Q |
222 |
att |
224 |
Q |
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||| |
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| T |
10124386 |
att |
10124388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 71
Target Start/End: Original strand, 28649786 - 28649836
Alignment:
| Q |
20 |
atgatcaagttgtttgcaagagtccaagataagttaaataaagaactctatt |
71 |
Q |
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| T |
28649786 |
atgatcaagttatttgcat-agttcaagataagttaaataaagaactctatt |
28649836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 48 - 224
Target Start/End: Complemental strand, 21393244 - 21393068
Alignment:
| Q |
48 |
ataagttaaataaagaactctattcttggcacctgattcatgattcttggtgtgtttgcagaaatacttcagctgtttacgcgtgcagcagccaagcatt |
147 |
Q |
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| T |
21393244 |
ataagtcaaataaagaactctattcttggcaccggttcgatgatgattgttgtacttgcaaaaatacttcaattgttcaagcttgcaacaaccgagcatt |
21393145 |
T |
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| Q |
148 |
tgtcctaataacagaaacagccagttgatactccgtttcttgtcagcaattaccgacttcaaactgttttgttgatt |
224 |
Q |
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| T |
21393144 |
tgtcccagcaatagaaacaaccaattgatattctttttcttctcggcaattaccggtttcacactgttttcttgatt |
21393068 |
T |
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