View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5875_low_44 (Length: 234)
Name: NF5875_low_44
Description: NF5875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5875_low_44 |
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Alignment Details
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 13882222 - 13882006
Alignment:
| Q |
1 |
tgggttcaaatattcaatttatttctcaaaaacgatcaagtttttccttggtatacttgttagagtctaaggggactaaatccattttacatggatatcc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
13882222 |
tgggttcaaatattcaatttatttctcaaaaacgatcaagtttttccttgatatacttgttagagtctaaggggactaaacccattttacatggatatcc |
13882123 |
T |
|
| Q |
101 |
aatagtagtccaatattttatcattttatactataattttaagatgtagttataaaagtgaaacgatatagcaaaagaatgaacatacattaagtattaa |
200 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13882122 |
aatagcagtccaatattttatcattttatactataattttaagatgtagttataaaagtgaaacgatatagcaaaagaatgaacatacattaagtattaa |
13882023 |
T |
|
| Q |
201 |
tgtcaaattgagttata |
217 |
Q |
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||||||||||||||||| |
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| T |
13882022 |
tgtcaaattgagttata |
13882006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 14022347 - 14022131
Alignment:
| Q |
1 |
tgggttcaaatattcaatttatttctcaaaaacgatcaagtttttccttggtatacttgttagagtctaaggggactaaatccattttacatggatatcc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
14022347 |
tgggttcaaatattcaatttatttctcaaaaacgatcaagtttttccttgatatacttgttagagtctaaggggactaaacccattttacatggatatcc |
14022248 |
T |
|
| Q |
101 |
aatagtagtccaatattttatcattttatactataattttaagatgtagttataaaagtgaaacgatatagcaaaagaatgaacatacattaagtattaa |
200 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14022247 |
aatagcagtccaatattttatcattttatactataattttaagatgtagttataaaagtgaaacgatatagcaaaagaatgaacatacattaagtattaa |
14022148 |
T |
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| Q |
201 |
tgtcaaattgagttata |
217 |
Q |
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||||||||||||||||| |
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| T |
14022147 |
tgtcaaattgagttata |
14022131 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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