View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5875_low_45 (Length: 228)
Name: NF5875_low_45
Description: NF5875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5875_low_45 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 159; Significance: 8e-85; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 7 - 228
Target Start/End: Original strand, 29921899 - 29922120
Alignment:
| Q |
7 |
atatctagcaagaacaaagtatgttttgggctcagatttgctaaacctcatgtggaatggacaattatccaaacccttaaccacaattatcttcctctca |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |
|
|
| T |
29921899 |
atatctagcaagaacaaagtatgttttgggctcagatttgctaaacctcatgtggaatggacaattatccagacccttaaccacaattctcttcctctca |
29921998 |
T |
|
| Q |
107 |
nnnnnnnnnnnnngcatggaaaactctcttacagatgtcctaagtaattcaacagttgtgaatatttgtcctaccacatatgtaattacatcagacaact |
206 |
Q |
| |
|
||| || |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29921999 |
tttttccttttttgcaaggcaaactctcttacagatgtcctaagtaattcaacacttgtgaatatttgtcctaccacatatgtaattacatcagacaact |
29922098 |
T |
|
| Q |
207 |
tgaactttgcaattttttgctt |
228 |
Q |
| |
|
||||||||| |||||||||||| |
|
|
| T |
29922099 |
tgaactttgaaattttttgctt |
29922120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 129 - 215
Target Start/End: Complemental strand, 9943883 - 9943797
Alignment:
| Q |
129 |
actctcttacagatgtcctaagtaattcaacagttgtgaatatttgtcctaccacatatgtaattacatcagacaacttgaactttg |
215 |
Q |
| |
|
||||||| ||||||||||||| ||| |||||| |||||||||| ||||||||| ||| |||||| ||||||||||||| ||||||| |
|
|
| T |
9943883 |
actctctaacagatgtcctaactaaatcaacatttgtgaatatctgtcctaccttataagtaatttcatcagacaacttaaactttg |
9943797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 106
Target Start/End: Complemental strand, 9944015 - 9943924
Alignment:
| Q |
15 |
caagaacaaagtatgttttgggctcagatttgctaaacctcatgtggaatggacaattatccaaacccttaaccacaattatcttcctctca |
106 |
Q |
| |
|
||||||||||||||||||| || ||| || | |||||||||| ||||||||||| || || ||| |||||||||||| || | ||||||| |
|
|
| T |
9944015 |
caagaacaaagtatgtttttggttcatatgttctaaacctcacatggaatggacattttccctaacacttaaccacaatcatgtacctctca |
9943924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 11 - 106
Target Start/End: Original strand, 11332907 - 11333002
Alignment:
| Q |
11 |
ctagcaagaacaaagtatgttttgggctcagatttgctaaacctcatgtggaatggacaattatccaaacccttaaccacaattatcttcctctca |
106 |
Q |
| |
|
||||| ||||||||||||||||| |||||| ||||| ||||||||||||||||| |||||| | || |||||||||||| ||||||||||| |
|
|
| T |
11332907 |
ctagctagaacaaagtatgttttaggctcaactttgcaaaacctcatgtggaatgtacaatttgaaatacacttaaccacaatcctcttcctctca |
11333002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University