View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5875_low_47 (Length: 227)
Name: NF5875_low_47
Description: NF5875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5875_low_47 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 13 - 227
Target Start/End: Complemental strand, 5391894 - 5391679
Alignment:
| Q |
13 |
atcatcacgaagcttccaaaatgtagcattaattataggcgtgacgggaattgtgggaaatagcctagcagagattttacctctcgacgacacaccaggt |
112 |
Q |
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| T |
5391894 |
atcaccacgaagcttccaaaatgtagcattaattataggcgtgacgggaattgtgggaaatagcctagcagagattttacctctcgacgacacaccaggt |
5391795 |
T |
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| Q |
113 |
ggtccatggaaggtttatggcgtggctcgccgtccacaacc-aacgtggaacgctgataagtatgttcactacattcaatgcgatgtctctgatcaaaaa |
211 |
Q |
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| T |
5391794 |
ggtccatggaaggtttatggcgtggctcgccgtccacaaccaaacgtggaacactgataattatgttgactacattcaatgcgatgtctctgatcaaaaa |
5391695 |
T |
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| Q |
212 |
gacgttgaattgaagc |
227 |
Q |
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| T |
5391694 |
gacgttgaattgaagc |
5391679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 21 - 227
Target Start/End: Complemental strand, 5395696 - 5395490
Alignment:
| Q |
21 |
gaagcttccaaaatgtagcattaattataggcgtgacgggaattgtgggaaatagcctagcagagattttacctctcgacgacacaccaggtggtccatg |
120 |
Q |
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| T |
5395696 |
gaagcttccaaaatgtagcattgattataggcgtgacgggaattgtgggaaatagcctagcagagattctacctctcgacgacacaccaggtggtccatg |
5395597 |
T |
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| Q |
121 |
gaaggtttatggcgtggctcgccgtccacaaccaacgtggaacgctgataagtatgttcactacattcaatgcgatgtctctgatcaaaaagacgttgaa |
220 |
Q |
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| T |
5395596 |
gaaggtttatggtgtggctcgccgtccacaaccaacgtggaacgctgataagtatgttcactacattcaatgcgatgtctctgaccaaaaagacgtcgaa |
5395497 |
T |
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| Q |
221 |
ttgaagc |
227 |
Q |
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| T |
5395496 |
ttgaagc |
5395490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 18 - 227
Target Start/End: Complemental strand, 5401846 - 5401637
Alignment:
| Q |
18 |
cacgaagcttccaaaatgtagcattaattataggcgtgacgggaattgtgggaaatagcctagcagagattttacctctcgacgacacaccaggtggtcc |
117 |
Q |
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|||||| | |||||||||||||||| ||||||||||| || ||||||||||||||||| ||||||||||| ||||||| | |||||||||| ||| || |
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| T |
5401846 |
cacgaaacgtccaaaatgtagcattgattataggcgtaacaggaattgtgggaaatagtctagcagagatcctacctctaaaagacacaccagttggacc |
5401747 |
T |
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| Q |
118 |
atggaaggtttatggcgtggctcgccgtccacaaccaacgtggaacgctgataagtatgttcactacattcaatgcgatgtctctgatcaaaaagacgtt |
217 |
Q |
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|||||||||||||||||||||||||||||||| ||||| |||||| | |||||| ||||||||| ||||| || |||||||| ||||||| || ||| |
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| T |
5401746 |
atggaaggtttatggcgtggctcgccgtccacgaccaatgtggaatgttgataaccctgttcactatattcagtgtgatgtctccaatcaaaacgatgtt |
5401647 |
T |
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| Q |
218 |
gaattgaagc |
227 |
Q |
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| T |
5401646 |
gaattgaagc |
5401637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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