View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5875_low_48 (Length: 224)
Name: NF5875_low_48
Description: NF5875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5875_low_48 |
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Alignment Details
Target: chr3 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 20 - 211
Target Start/End: Original strand, 46301014 - 46301205
Alignment:
| Q |
20 |
gtagtaaggtgataattgatggtggtggtgttgagggtgatgagaccgctgggtagtgaattcaccgtcgatttctttgcggtggaagttccggtgacag |
119 |
Q |
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| T |
46301014 |
gtagtaaggtgataattgatggtggtggtgttgagggtgatgagaccgctgggtagtgaattcaccgtcgatttctttgcggtggaagttccggtgacag |
46301113 |
T |
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| Q |
120 |
ccacaagcagcacaaatcaccgcttccagtgttccttcctctccggcagctaaaaactcgcaacatccatccacggcatgaccgcctatgct |
211 |
Q |
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| T |
46301114 |
ccacaagcagcacaaatcaccgcttccagtgttccttcctctccggcagctaaaaactcgcaacatccatccacggcatgaccgcctatgct |
46301205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 80 - 184
Target Start/End: Complemental strand, 27508264 - 27508160
Alignment:
| Q |
80 |
ttcaccgtcgatttctttgcggtggaagttccggtgacagccacaagcagcacaaatcaccgcttccagtgttccttcctctccggcagctaaaaactcg |
179 |
Q |
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| T |
27508264 |
ttcaccatcgatctctttgcggtggaagttccggtgacagttacaagcggcgcaaataacagcttcaagtgttccttcttcaccggcagcaataaactcg |
27508165 |
T |
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| Q |
180 |
caaca |
184 |
Q |
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| T |
27508164 |
caaca |
27508160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 98 - 133
Target Start/End: Complemental strand, 24181213 - 24181178
Alignment:
| Q |
98 |
gcggtggaagttccggtgacagccacaagcagcaca |
133 |
Q |
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| T |
24181213 |
gcggtggaaattccggtgacagccacaagcagcaca |
24181178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 145
Target Start/End: Original strand, 35192865 - 35192931
Alignment:
| Q |
79 |
attcaccgtcgatttctttgcggtggaagttccggtgacagccacaagcagcacaaatcaccgcttc |
145 |
Q |
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| T |
35192865 |
attcaccatcgatctctttgcggtggaagttctggtgacagttacaagcggcgcaaataacagcttc |
35192931 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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