View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5875_low_6 (Length: 472)
Name: NF5875_low_6
Description: NF5875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5875_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 429; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 24 - 460
Target Start/End: Complemental strand, 44997873 - 44997437
Alignment:
| Q |
24 |
agaagatcccaacgaaaaatctgggaaaggctgttcatcatgtcatcaagctcatcatccttcatgtccaccagcgtgctcactgtaaaaccaagctctg |
123 |
Q |
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| T |
44997873 |
agaagatcccaacgaaaaatctgggaaaggctgttcatcatgtcatcaagctcatcatccttcatgtccaccagcgtgctcactgtaaaaccaagctctg |
44997774 |
T |
|
| Q |
124 |
ctatcttcgccgccgtgtagtatctgattccataagcttggaaaagttcctccaaacctccaagttctcttggtaatctagctggataataaggtgatgg |
223 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
44997773 |
ctatcttcgccgccgtgtagtatctgattccataagcttggaaaagttcctccaaacctccaagttctcttggtaatctcgctggataataaggtgatgg |
44997674 |
T |
|
| Q |
224 |
agcagttgatggggtgactgcgtagtcgagaagttggggacggagaggtggagctgttggtaggacggtacgtgggtcccacttgaataggctggcggtg |
323 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44997673 |
agcagttgatggggtgactgcgtagtcgagaagttggggacggagaggtggagctgttggtaggacggtacgtgggtcccacttgaataggctggcggtg |
44997574 |
T |
|
| Q |
324 |
aatgcgtcgggatccatagtaagcaatgaaactgttttaacttctttgtgtatgtttgttaggttttggaaaattatgagaagtggaagatttatggtac |
423 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44997573 |
aatgcgtcgggatccatggtaagcaatgaaactgttttaacttctttgtgtatgtttgttaggttttggaaaattatgagaagtggaagatttatggtac |
44997474 |
T |
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| Q |
424 |
tgtttaggtggagatatagaaaacgtaaaggtggtga |
460 |
Q |
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| T |
44997473 |
tgtttaggtggagatatagaaaacgtaaaggtggtga |
44997437 |
T |
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