View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5875_low_7 (Length: 460)
Name: NF5875_low_7
Description: NF5875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5875_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 421; Significance: 0; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 18 - 453
Target Start/End: Original strand, 33019694 - 33020127
Alignment:
| Q |
18 |
ctaagtacaacaggaatgtagacgttcttttgttcctcctaataaagcactgtatccgataatcactgggaccgggctagtcatacacataaaggaaaga |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33019694 |
ctaagtacaacaggaatgtagacgttcttttgttcctcctaataaagcactgtatccgataatcactgggaccgggctagtcatacacataaaggaaaga |
33019793 |
T |
|
| Q |
118 |
gaacataaaaaactgagagcaatacgaataatttgtatcagaccagaaagtgggagaagaattcattacctgcttcaatgaaataggaaatgtaagcatt |
217 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33019794 |
gaacataaaaaactgag--caatacgaataatttgtatcagaccagaaagtgggagaagaattcattacctgcttcaatgaaataggaaatgtaagcatt |
33019891 |
T |
|
| Q |
218 |
ccacattgctgaggagtcttgacaatctctaacgtgatggacctccacgatttacataccgaagcacaacagacaacaatggcacgggcaggccaagatg |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33019892 |
ccacattgctgaggagtcttgacaatctctaacgtgatggacctccacgatttacataccgaagcacaacagacaacaatggcacgggcaggccaagatg |
33019991 |
T |
|
| Q |
318 |
tcgcactctcttcaaccctacggattatatccaaaagcaattcaggtggtagatatgcccactgtccctgttgaacgggttcaattggagttacatccag |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
33019992 |
tcgcactctcttcaaccctacggattatatccaaaagcaattcaggtggtagatatgcccactgtccctgttgaacaggttcaattggagttacatccag |
33020091 |
T |
|
| Q |
418 |
tgcaacatgggactttgtccgacagagcctatgctt |
453 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
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|
| T |
33020092 |
tgcaacatgggactttgtccgacagagcctatgctt |
33020127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 18 - 453
Target Start/End: Original strand, 33040826 - 33041261
Alignment:
| Q |
18 |
ctaagtacaacaggaatgtagacgttcttttgttcctcctaataaagcactgtatccgataatcactgggaccgggctagtcatacacataaaggaaaga |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |||||||||||| ||||||||||||||||||| |
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|
| T |
33040826 |
ctaagtacaacaggaatgtagacgttcttttgttcctcctaataaagcactggatcggataatcacagggaccgggctatccatacacataaaggaaaga |
33040925 |
T |
|
| Q |
118 |
gaacataaaaaac-tgagagcaatacgaataatttgtatcagaccagaaagtgggagaag-aattcattacctgcttcaatgaaataggaaatgtaagca |
215 |
Q |
| |
|
||||||||||||| ||| || || |||||||| | || ||||||||||||||| ||| |||| ||||||||||||| ||||||||||||||| | | |
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|
| T |
33040926 |
gaacataaaaaacatgacagaaaa--gaataattcggattagaccagaaagtgggtgaaataattgattacctgcttcactgaaataggaaatgtgatcc |
33041023 |
T |
|
| Q |
216 |
ttccacattgctgaggagtcttgacaatctctaacgtgatggacctccacgatttacataccgaagcacaacagacaacaatggcacgggcaggccaaga |
315 |
Q |
| |
|
|||||||||| |||||||||||||| |||||||| ||| ||||||||| ||||||||||| ||||||||| ||| ||||| ||||| ||||||||| | |
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|
| T |
33041024 |
ttccacattgttgaggagtcttgacgatctctaatgtggcggacctccatgatttacatactgaagcacaaaagataacaacagcacgtgcaggccaaaa |
33041123 |
T |
|
| Q |
316 |
tgtcgcactctcttcaaccctacggattatatccaaaagcaattcaggtggtagatatgcccactgtccctgttgaacgggttcaattggagttacatcc |
415 |
Q |
| |
|
|||| |||||| ||||||||| |||||||| |||||||||||||||||||||||| |||||| ||||||||||||| ||||||||||||||||||||| |
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|
| T |
33041124 |
tgtctcactcttttcaacccttcggattatgtccaaaagcaattcaggtggtagacttgcccattgtccctgttgaataggttcaattggagttacatcc |
33041223 |
T |
|
| Q |
416 |
agtgcaacatgggactttgtccgacagagcctatgctt |
453 |
Q |
| |
|
|| ||||| ||||| |||| |||||||| | ||||||| |
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|
| T |
33041224 |
agagcaacgtgggaatttgaccgacagaacatatgctt |
33041261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 23 - 370
Target Start/End: Original strand, 33025742 - 33026092
Alignment:
| Q |
23 |
tacaacaggaatgtagacgttcttttgttcctcctaataaagcactgtatccgataatcactgggaccgggctagtcatacacataaaggaaagagaaca |
122 |
Q |
| |
|
|||||||| |||||||| |||||| |||||||||| |||||||| |||||| ||| || || ||||| ||||| ||| |||||||||||||||||||| |
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|
| T |
33025742 |
tacaacagaaatgtagaagttcttctgttcctccttataaagcaatgtatcggatgataacgaggaccaggctaagcatgcacataaaggaaagagaaca |
33025841 |
T |
|
| Q |
123 |
taaaaaactgagagcaatacgaataatttgtatcagaccagaaagtgggagaagaattcat----tacctgcttcaatgaaataggaaatgtaagcattc |
218 |
Q |
| |
|
||||||||| ||| ||| |||| ||||| || ||||||||||||||| |||||||| || | ||||| ||||||||||||||||||| | | ||| |
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|
| T |
33025842 |
taaaaaactc-gagggataagaatcatttgaattagaccagaaagtgggtgaagaattaatgtattgcctgcatcaatgaaataggaaatgtgatccttc |
33025940 |
T |
|
| Q |
219 |
cacattgctgaggagtcttgacaatctctaacgtgatggacctccacgatttacataccgaagcacaacagacaacaatggcacgggcaggccaagatgt |
318 |
Q |
| |
|
||||||||||| |||| ||||| |||||| |||| ||||||||| ||||||||||| |||||||| |||||||| ||||| |||||||||||||| |
|
|
| T |
33025941 |
cacattgctgaagagttttgacgatctcttttgtgacggacctccatgatttacatactgaagcacagacgacaacaacagcacgtgcaggccaagatgt |
33026040 |
T |
|
| Q |
319 |
cgcactctcttcaaccctacggattatatccaaaagcaattcaggtggtaga |
370 |
Q |
| |
|
| |||| ||||||||| |||||||||| ||||||||||||||| |||||||| |
|
|
| T |
33026041 |
ctcactttcttcaaccttacggattatgtccaaaagcaattcacgtggtaga |
33026092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 173 - 446
Target Start/End: Complemental strand, 32828952 - 32828679
Alignment:
| Q |
173 |
gaagaattcattacctgcttcaatgaaataggaaatgtaagcattccacattgctgaggagtcttgacaatctctaacgtgatggacctccacgatttac |
272 |
Q |
| |
|
|||||||| ||||| || |||||||||||||||||||| | | |||| |||||||| |||||||||| |||||| || | ||||||||| ||||||| |
|
|
| T |
32828952 |
gaagaatttattacttgtttcaatgaaataggaaatgtgatccttccgcattgctggggagtcttgataatctccttagtaacggacctccatgatttac |
32828853 |
T |
|
| Q |
273 |
ataccgaagcacaacagacaacaatggcacgggcaggccaagatgtcgcactctcttcaaccctacggattatatccaaaagcaattcaggtggtagata |
372 |
Q |
| |
|
|||||||||||||| | ||||||| ||||| ||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| |||||| |
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|
| T |
32828852 |
ataccgaagcacaaaaaacaacaacagcacgagcaggccaagatgtctcactctcttcaaccctacggattatgtccaaaagcaattcaggaggtagact |
32828753 |
T |
|
| Q |
373 |
tgcccactgtccctgttgaacgggttcaattggagttacatccagtgcaacatgggactttgtccgacagagcc |
446 |
Q |
| |
|
||||| ||||| ||||||| ||||||||||||||||||||| | |||||||| ||||||| |||||| |||| |
|
|
| T |
32828752 |
cgcccattgtccttgttgaataggttcaattggagttacatccggagcaacatgcgactttgaccgacatagcc |
32828679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 45 - 231
Target Start/End: Original strand, 33030267 - 33030452
Alignment:
| Q |
45 |
ttttgttcctcctaataaagcactgtatccgataatcactgggaccgggctagtcatacacataaaggaaagagaacataaaaaa-ctgagagcaatacg |
143 |
Q |
| |
|
|||||||||||| |||||||||||| ||| ||| ||||| |||||||||||| ||||||||| ||||||| ||||||||||||| |||| | || | | |
|
|
| T |
33030267 |
ttttgttcctccgaataaagcactgcatcggatgatcacggggaccgggctatgcatacacatgaaggaaatagaacataaaaaatatgag-ggaaaatg |
33030365 |
T |
|
| Q |
144 |
aataatttgtatcagaccagaaagtgggagaagaattcattacctgcttcaatgaaataggaaatgtaagcattccacattgctgagg |
231 |
Q |
| |
|
|||| ||| || ||||||||||||||| ||| |||| ||||||||||||| ||||||||||||||| | | || ||||||||||||| |
|
|
| T |
33030366 |
-ataaattggattagaccagaaagtgggtgaataatttattacctgcttcactgaaataggaaatgtgatcctttcacattgctgagg |
33030452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 18 - 125
Target Start/End: Complemental strand, 32829162 - 32829056
Alignment:
| Q |
18 |
ctaagtacaacaggaatgtagacgttcttttgttcctcctaataaagcactgtatccgataatcactgggaccgggctagtcatacacataaaggaaaga |
117 |
Q |
| |
|
|||||||||||| ||| ||||| ||| | |||||||||||||||||||||| ||| ||||||||| ||||||||||| |||||||||| ||||||||| |
|
|
| T |
32829162 |
ctaagtacaacacgaaggtagaagtttctctgttcctcctaataaagcactggatcggataatcacgaggaccgggctattcatacacat-aaggaaaga |
32829064 |
T |
|
| Q |
118 |
gaacataa |
125 |
Q |
| |
|
|||||||| |
|
|
| T |
32829063 |
gaacataa |
32829056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 173 - 401
Target Start/End: Original strand, 7880089 - 7880317
Alignment:
| Q |
173 |
gaagaattcattacctgcttcaatgaaataggaaatgtaagcattccacattgctgaggagtcttgacaatctctaacgtgatggacctccacgatttac |
272 |
Q |
| |
|
|||||||| || |||||||| || ||||||||||| || | | ||||||| | | ||||||| ||||||||| || | || |||||| ||||||| |
|
|
| T |
7880089 |
gaagaattaatcacctgctttaacgaaataggaaacgtcaaccttccacactcttcgggagtctgaacaatctcttgtgtaacggccctccatgatttac |
7880188 |
T |
|
| Q |
273 |
ataccgaagcacaacagacaacaatggcacgggcaggccaagatgtcgcactctcttcaaccctacggattatatccaaaagcaattcaggtggtagata |
372 |
Q |
| |
|
| || ||||||||| | || |||| ||||| ||||||||||| ||| | ||||||| ||||| || |||||||| | |||||||||| ||||| || |
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|
| T |
7880189 |
acacagaagcacaagaaacgacaacagcacgtgcaggccaagaagtctcggtctcttctacccttcgaattatatcaagtagcaattcagatggtatatt |
7880288 |
T |
|
| Q |
373 |
tgcccactgtccctgttgaacgggttcaa |
401 |
Q |
| |
|
||||| |||||||| |||| ||||||| |
|
|
| T |
7880289 |
agcccattgtccctgctgaataggttcaa |
7880317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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