View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5875_low_8 (Length: 455)
Name: NF5875_low_8
Description: NF5875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5875_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 18 - 429
Target Start/End: Original strand, 54478586 - 54478995
Alignment:
| Q |
18 |
attgcaggtccacaagttttgcataagtacgtgtatctagttttgacaaaccttttagtcgtccaatgagcaaattagtcattattttattttctataat |
117 |
Q |
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| T |
54478586 |
attgcaggtccacaagttttgcataagt----gtatctagttttgacaaaccttttagtcgtccaatgagcaaattagtcattattttattttctataat |
54478681 |
T |
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| Q |
118 |
gtacgatactacatcaatattaaagaaaaactgttcttaaagcatgaaaataatgcaaatatatattaattatannnnnnnnnnggaggcagtgataatt |
217 |
Q |
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| T |
54478682 |
gtacgatactacatcaatattaaagaaaaactgttcttaaagcatgaaaataatgcaaatatatattaattatatattttttt-ggaggcagtgataatt |
54478780 |
T |
|
| Q |
218 |
caatgaagaaagctttttgtaacatatttta---aattcattgaagaaatcttttttgtaaaatattttaaagtataaatatttgtatttgagcattgct |
314 |
Q |
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| T |
54478781 |
caatgaagaaagctttttgtaacatattttattaaattcattgaagaaatcttttttgtaaaatattttaaagtataaatatttgtatttgagcattgct |
54478880 |
T |
|
| Q |
315 |
ttaaataatatgcatacaataagttgatcacttcaaagttaaagatcaaagtcttttttcattctctttcccattaaatttcctcacattgctcactcac |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54478881 |
ttaaataatatgcatacaataagttgatcacttcaaagttaaagatcaaagtctgttttcattctctttcccattaaatttcctcacattgctcactcac |
54478980 |
T |
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| Q |
415 |
actcacatcagaaca |
429 |
Q |
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| T |
54478981 |
actcgcatcagaaca |
54478995 |
T |
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