View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5875_low_9 (Length: 455)
Name: NF5875_low_9
Description: NF5875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5875_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 410; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 17 - 449
Target Start/End: Complemental strand, 32730432 - 32730002
Alignment:
| Q |
17 |
atgaacaataaatcagaaattttaaaaatataaatcacattaattaatttttgactttgtgatcaacataaatatatgattagaaataatctagaactaa |
116 |
Q |
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| T |
32730432 |
atgaacaataaataagaaattttaaaaatataaatcacattaattaatttttgactttgtgatcaacataaatatatgattagaaataatctagaactaa |
32730333 |
T |
|
| Q |
117 |
accagttgaaatgattgaatgctgaacggagatcttggttgatgttgaaatgtcaatcccatcggtgttgggactatcctttggagcaattatatgaaga |
216 |
Q |
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| T |
32730332 |
accagttgaaatgattgaatgctgaacggagatgttggttgatgttgaaatgtcaatcccatcggtgttgggactatcctttggagcaattatatgaaga |
32730233 |
T |
|
| Q |
217 |
ttagagattaaagcgtcattgcatccaactatacttatatgatttctggggctgttgatgtgtttcaatgggccaagttttagattatcacattcaagaa |
316 |
Q |
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| T |
32730232 |
ttagagattaaagcgtcattgcatccgactatacttatatgatttctggggctgttgatgtgtttcaatgggccaagttttagattatcacattcaagaa |
32730133 |
T |
|
| Q |
317 |
ttttaagagcctgcatatatatatgttataccaaatgattaattaattatacactttaattccaagactcaaagtgtgagtttgtatacattatcatttt |
416 |
Q |
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| T |
32730132 |
ttttaagagcctgcatatatatatgttataccaaatgattaattaattatacactttaattccaagactcaaagtgtgagtttgtatac--tatcatttt |
32730035 |
T |
|
| Q |
417 |
aattttaatatatactcctctttggatagaatt |
449 |
Q |
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| T |
32730034 |
aattttaatatatactcctctttggatagaatt |
32730002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 92; Significance: 2e-44; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 151 - 346
Target Start/End: Complemental strand, 38090182 - 38089987
Alignment:
| Q |
151 |
ttggttgatgttgaaatgtcaatcccatcggtgttgggactatcctttggagcaattatatgaagattagagattaaagcgtcattgcatccaactatac |
250 |
Q |
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||||||||| ||||||| ||||| ||||||||||||||||||| || || |||||||||||||||| |||||||||||| ||||||| | ||||| | |
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| T |
38090182 |
ttggttgatcttgaaatatcaattccatcggtgttgggactattctccggtgcaattatatgaagatgggagattaaagcgccattgcaatcgactatgc |
38090083 |
T |
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| Q |
251 |
ttatatgatttctggggctgttgatgtgtttcaatgggccaagttttagattatcacattcaagaattttaagagcctgcatatatatatgttata |
346 |
Q |
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| T |
38090082 |
ttatatgattttttgggctgtcaatgtgtctcaatggaccaagttttagattatcacatccaagaaattgaagagcctgcagataaacatgttata |
38089987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 169 - 284
Target Start/End: Original strand, 19057292 - 19057407
Alignment:
| Q |
169 |
tcaatcccatcggtgttgggactatcctttggagcaattatatgaagattagagattaaagcgtcattgcatccaactatacttatatgatttctggggc |
268 |
Q |
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||||||||||| ||||| ||||||| | || |||||||| |||||||| ||||| |||||| |||||| | ||||||||||||||||||| |||| |
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| T |
19057292 |
tcaatcccatcagtgtttggactattttcgggcgcaattatctgaagattggagatggaagcgtttttgcatgaatctatacttatatgatttcttgggc |
19057391 |
T |
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| Q |
269 |
tgttgatgtgtttcaa |
284 |
Q |
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| T |
19057392 |
tgttaatgtgattcaa |
19057407 |
T |
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