View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5876-Insertion-1 (Length: 839)

Name: NF5876-Insertion-1
Description: NF5876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5876-Insertion-1
NF5876-Insertion-1
[»] chr7 (3 HSPs)
chr7 (9-709)||(7384324-7385026)
chr7 (705-833)||(7385053-7385181)
chr7 (493-552)||(7386056-7386115)


Alignment Details
Target: chr7 (Bit Score: 533; Significance: 0; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 533; E-Value: 0
Query Start/End: Original strand, 9 - 709
Target Start/End: Original strand, 7384324 - 7385026
Alignment:
Q  9 acaggaatgatatgtctgaaacggaaccgatgctttctcacttgtcaagctcggatccttcaccttccatcattgaaagtcagatcttgcagcagacatg 108  Q
    ||||||||||| |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||    
T  7384324 acaggaatgatttgtccgaaacggaaccgatgctttctcaattgtcaagctcggatccttcaccttccttcatagaaagtcagatcttgcagcagacatg 7384423  T
Q  109 cctgatgaatgaagacgtgaagaacaatgaagatggtgacatgtctaagaaaattgccatgtctcttgattcatcagttaatttattggtgttggatgca 208  Q
     ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| |||||| ||| |||| |||||||||||||||    
T  7384424 tctgatgaatgaagacgtgaagaacaatgaagatggtgacatttctaagaaaattaccatgtctcttggttcatcggttgatttcttggtgttggatgca 7384523  T
Q  209 aagactaaacttgtgagttgctcggataatacttcaaccatgcagcaatctgaatcaacggtctctgtaataacgctcgaagacattgattctttaagcc 308  Q
    |||| |||| | ||  | || || ||||||||||||||||   ||||||||||||||| ||||||||||||||| |||| ||||||||||||||||||||    
T  7384524 aagagtaaagtcgttggatgttccgataatacttcaaccactgagcaatctgaatcaaaggtctctgtaataacactcggagacattgattctttaagcc 7384623  T
Q  309 attcttcttatgcttcaaagcaacaggtatcaattttcttactcgactattatgattgttcatattttttcatcaagttgttcagcatttagtttgctaa 408  Q
    |||||||||  ||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| |||| | ||||||||||| |||    
T  7384624 attcttcttgcgcttcaaagcaacaggtataaattttcttactcgactattaggattgttcatattttttcatcaaggtgttgaacatttagtttgttaa 7384723  T
Q  409 aatttagatcctgtaaagatttgaaagtgttaaatgttttgtcgtctcgttcactattaatagattgtacataaatgcgtgtcatcttgaagttaattga 508  Q
    |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7384724 aatttagatcctgtaaagatttaaaagtgttaaatgttttgtcgactcgttcactattaatagattgtacataaatgcgtgtcatcttgaagttaattga 7384823  T
Q  509 gatgtctaaaggtctgatgaaatcagagagttgttgagaatctagacgtaagatcttaccggaaattctttttagttatgcaaaaggtgagattaacttt 608  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  7384824 gatgtctaaaggtctgatgaaatcagagagttgttgagaatctagacgtaagatcttaccggaaattc--tttagttatgcaaaaggtgagattaacttt 7384921  T
Q  609 gttagaaaacaaaat----tttcataatatctcacaatatctaggttacaagttttcgatcttagcatatattagattatctcctaggattaattccgat 704  Q
    |||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7384922 gttagaaaacaaaataatatttcataatatctcacaatatctaggttacaagttttcgatcttagcatatattagattatctcctaggattaattccgat 7385021  T
Q  705 ttttc 709  Q
    |||||    
T  7385022 ttttc 7385026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 705 - 833
Target Start/End: Original strand, 7385053 - 7385181
Alignment:
Q  705 ttttcttatttatttaggatctagtctacgtattactataaacagagattcgaatttagtattttggatcatacttctctcaagcaactatcaaattgtt 804  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  7385053 ttttcttatttatttaggatctagtctacgtattactataaacagagattcgaatttagcattttggatcatacttctctcaagcaactatcaaattgtt 7385152  T
Q  805 atcaatgatattgaaagctgttcttgtta 833  Q
    ||||||||||||||||| |||||||||||    
T  7385153 atcaatgatattgaaagttgttcttgtta 7385181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 493 - 552
Target Start/End: Original strand, 7386056 - 7386115
Alignment:
Q  493 tcttgaagttaattgagatgtctaaaggtctgatgaaatcagagagttgttgagaatcta 552  Q
    ||||||||||||||||||| ||||| | |||||||||||||| ||||||||||| |||||    
T  7386056 tcttgaagttaattgagatatctaaggctctgatgaaatcagggagttgttgagcatcta 7386115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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