View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5876-Insertion-11 (Length: 273)
Name: NF5876-Insertion-11
Description: NF5876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5876-Insertion-11 |
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| [»] chr8 (2 HSPs) |
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| [»] scaffold0428 (1 HSPs) |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 8 - 273
Target Start/End: Complemental strand, 906475 - 906210
Alignment:
| Q |
8 |
aaaatgtatacacatgacgttcaaaagttatgtaatttcaatgctaaagaagagagtgctttcctagatgaaccatgttcacttgttgcaacagcagcac |
107 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
906475 |
aaaatgtatacacatgccgttcaaaagttatgtaatttcaatgctaaagaagagagtgctttcctagatgaaccatgttcacttgttgcaacagcagcac |
906376 |
T |
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| Q |
108 |
catcactcaattctttgattctcttttgtatctccaagctttcatcaccttccatgattctctttacacatttagcaacttcctctcttttcactatccc |
207 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
906375 |
catcactcaattctttaattctcttttgtatctccaagctttcatcaccttccatgattctctttacacatttagcaacttcctctcttttcactatccc |
906276 |
T |
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| Q |
208 |
actttcatcgtcaacctttggcctcacagccactttgagcacatctgtcaataatctcgcattcat |
273 |
Q |
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| T |
906275 |
actttcatcatcaacctttggcctcacagccactttgagcacatctgtcaataatctcgcattcat |
906210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 28 - 273
Target Start/End: Original strand, 894188 - 894433
Alignment:
| Q |
28 |
tcaaaagttatgtaatttcaatgctaaagaagagagtgctttcctagatgaaccatgttcacttgttgcaacagcagcaccatcactcaattctttgatt |
127 |
Q |
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| T |
894188 |
tcaaaagttttgcaatctcgatgctaaagaagagagtgccttcttagatgaaccattttcacttgttgcaacagcagcaccaacactcaattccttaatt |
894287 |
T |
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| Q |
128 |
ctcttttgtatctccaagctttcatcaccttccatgattctctttacacatttagcaacttcctctcttttcactatcccactttcatcgtcaacctttg |
227 |
Q |
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| T |
894288 |
ctcttttgtatttccaagctttcatcaccttccatgattctctttacacagttggcaacttcttctcttttcactatcccactttcatcatcaatctttg |
894387 |
T |
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| Q |
228 |
gcctcacagccactttgagcacatctgtcaataatctcgcattcat |
273 |
Q |
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| T |
894388 |
gcctcacagccaccttgagctcatctgtcaataatttggcattcat |
894433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0428 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: scaffold0428
Description:
Target: scaffold0428; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 44 - 273
Target Start/End: Complemental strand, 1717 - 1488
Alignment:
| Q |
44 |
ttcaatgctaaagaagagagtgctttcctagatgaaccatgttcacttgttgcaacagcagcaccatcactcaattctttgattctcttttgtatctcca |
143 |
Q |
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| T |
1717 |
ttcaatgctagagtagagagtgctttcctagaagaaccatgctcacttagtactgtagcagcactaacactcaattctttgattttctttcgaatttcaa |
1618 |
T |
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| Q |
144 |
agctttcatcaccttccatgattctctttacacatttagcaacttcctctcttttcactatcccactttcatcgtcaacctttggcctcacagccacttt |
243 |
Q |
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| T |
1617 |
agctttcatctccttccatgattctctttaaagctttggagacttcctctcgttttattatcccagtttcaccatcaacctttggccttactgccacttt |
1518 |
T |
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| Q |
244 |
gagcacatctgtcaataatctcgcattcat |
273 |
Q |
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| T |
1517 |
tagcacatcagtgagtaattttgcattcat |
1488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 44 - 273
Target Start/End: Complemental strand, 33257599 - 33257370
Alignment:
| Q |
44 |
ttcaatgctaaagaagagagtgctttcctagatgaaccatgttcacttgttgcaacagcagcaccatcactcaattctttgattctcttttgtatctcca |
143 |
Q |
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|||||||||| || |||||||||||||||||| |||||||| |||||| | | |||||||| | ||||||||||||||||| ||||| | || || | |
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| T |
33257599 |
ttcaatgctagagtagagagtgctttcctagaagaaccatgctcacttagtactgtagcagcactaacactcaattctttgattttctttcgaatttcaa |
33257500 |
T |
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| Q |
144 |
agctttcatcaccttccatgattctctttacacatttagcaacttcctctcttttcactatcccactttcatcgtcaacctttggcctcacagccacttt |
243 |
Q |
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| T |
33257499 |
agctttcatctccttccatgattctctttaaagctttggagacttcctctcgttttattatcccagtttcaccatcaacctttggccttactgccacttt |
33257400 |
T |
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| Q |
244 |
gagcacatctgtcaataatctcgcattcat |
273 |
Q |
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| T |
33257399 |
tagcacatcagtgagtaattttgcattcat |
33257370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 50 - 273
Target Start/End: Original strand, 8294162 - 8294385
Alignment:
| Q |
50 |
gctaaagaagagagtgctttcctagatgaaccatgttcacttgttgcaacagcagcaccatcactcaattctttgattctcttttgtatctccaagcttt |
149 |
Q |
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|||| |||||| |||||||||||||| |||||||| |||||| || |||||||||| ||||||||||||||||| ||||| || || ||||||| |
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| T |
8294162 |
gctagagaagaaagtgctttcctagaagaaccatgctcacttagcacagtagcagcaccaacactcaattctttgattttctttctaatttcaaagcttt |
8294261 |
T |
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| Q |
150 |
catcaccttccatgattctctttacacatttagcaacttcctctcttttcactatcccactttcatcgtcaacctttggcctcacagccactttgagcac |
249 |
Q |
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|||| |||| ||||||||| |||| | ||| |||||||||||| ||| | |||||| ||||||| ||||||||||||||||| ||||||||||| || |
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| T |
8294262 |
catctcctttcatgattctttttatagctttggcaacttcctcttgttttataatcccagtttcatcatcaacctttggcctcactgccactttgagtac |
8294361 |
T |
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| Q |
250 |
atctgtcaataatctcgcattcat |
273 |
Q |
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||| || | |||| | |||||||| |
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| T |
8294362 |
atcagtgagtaattttgcattcat |
8294385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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