View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5876-Insertion-13 (Length: 247)
Name: NF5876-Insertion-13
Description: NF5876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5876-Insertion-13 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 9 - 242
Target Start/End: Complemental strand, 39749082 - 39748849
Alignment:
| Q |
9 |
aaaacaacattcagcaaaagactcgaatgttggaagaaacaaaatcatgcacctgaaaaggaattgatgtaatggaatcatcaccaaactccccagcagt |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39749082 |
aaaacaacattcagcaaaagactcgaatgttggaagaaacaaaatcatgcacctgaaaaggaattgatgtaatggaatcatcaccaaactccccagcagt |
39748983 |
T |
|
| Q |
109 |
catcaaattatattctgtctccttcgtcgaatcaagcagcctcagtctcggtctcaatccatatccatatccatcctgaaacaacataacaatcacccat |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
39748982 |
catcaaattatattctgtctccttcgtcgaatcaagcagcctcggtctcggtctcaatccatatccatctccatcctgaaacaacataacaatcacccat |
39748883 |
T |
|
| Q |
209 |
gagttacttcctatgaaacacctacacagacaca |
242 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| |
|
|
| T |
39748882 |
gagttacttcctataaaacacctacacagacaca |
39748849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University