View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5876-Insertion-16 (Length: 176)
Name: NF5876-Insertion-16
Description: NF5876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5876-Insertion-16 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 76; Significance: 2e-35; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 82 - 176
Target Start/End: Complemental strand, 2446844 - 2446749
Alignment:
| Q |
82 |
aggccaacgagcattttgttggtaagaaggccaagactggcccttacaacttacaacattggtttgtgcttcaccc-tcttcatttcctctttgtc |
176 |
Q |
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| T |
2446844 |
aggcaaacaagcattttgttggtaagaaggccaagactggcccttacaacttacaacattggtttgtgcttcacccttcttcatttcctttttgtc |
2446749 |
T |
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Target: chr4; HSP #2
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 9 - 84
Target Start/End: Complemental strand, 2446944 - 2446869
Alignment:
| Q |
9 |
cttttggagctttcttgtaccactgatcagttgaaacattttaaggaggaacataatttatcttcaaatgtggagg |
84 |
Q |
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| T |
2446944 |
cttttggagctttcttgtaccactgatcagttgaaacattttaaggaggaacataatttatcttcaaatgtggagg |
2446869 |
T |
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