View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5876-Insertion-2 (Length: 821)

Name: NF5876-Insertion-2
Description: NF5876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5876-Insertion-2
NF5876-Insertion-2
[»] chr3 (28 HSPs)
chr3 (42-628)||(25892292-25892874)
chr3 (42-177)||(25911221-25911356)
chr3 (516-628)||(25906660-25906770)
chr3 (629-756)||(25892142-25892268)
chr3 (47-133)||(25906835-25906921)
chr3 (677-756)||(25906513-25906592)
chr3 (406-452)||(1830351-1830397)
chr3 (377-454)||(12704633-12704710)
chr3 (381-457)||(25326429-25326505)
chr3 (404-454)||(15864839-15864889)
chr3 (404-453)||(3730168-3730217)
chr3 (407-460)||(20691319-20691372)
chr3 (377-454)||(25074795-25074872)
chr3 (404-457)||(34189430-34189483)
chr3 (398-454)||(25652028-25652084)
chr3 (404-486)||(14223856-14223939)
chr3 (407-454)||(40150577-40150624)
chr3 (404-454)||(52369781-52369831)
chr3 (406-455)||(21149072-21149121)
chr3 (176-220)||(25906791-25906835)
chr3 (404-439)||(12100290-12100325)
chr3 (419-462)||(16789668-16789711)
chr3 (404-454)||(24205044-24205094)
chr3 (404-454)||(25365468-25365518)
chr3 (407-452)||(8039841-8039886)
chr3 (407-452)||(8383265-8383310)
chr3 (382-463)||(21861566-21861647)
chr3 (404-457)||(27903635-27903688)
[»] scaffold0778 (3 HSPs)
scaffold0778 (396-628)||(4238-4470)
scaffold0778 (629-756)||(4088-4214)
scaffold0778 (49-121)||(684-756)
[»] scaffold1192 (3 HSPs)
scaffold1192 (629-756)||(1826-1952)
scaffold1192 (47-133)||(1598-1684)
scaffold1192 (181-263)||(1691-1773)
[»] chr5 (14 HSPs)
chr5 (377-453)||(43554528-43554604)
chr5 (377-442)||(26205736-26205801)
chr5 (396-453)||(25863211-25863268)
chr5 (404-451)||(39696002-39696049)
chr5 (404-452)||(31264446-31264494)
chr5 (404-454)||(7997169-7997219)
chr5 (404-454)||(18607100-18607150)
chr5 (418-454)||(18162061-18162097)
chr5 (409-452)||(15410456-15410499)
chr5 (414-464)||(2577193-2577243)
chr5 (404-454)||(5467981-5468031)
chr5 (378-452)||(14574027-14574100)
chr5 (407-452)||(28588680-28588725)
chr5 (418-463)||(34276869-34276914)
[»] scaffold1390 (1 HSPs)
scaffold1390 (9-56)||(1689-1736)
[»] chr4 (20 HSPs)
chr4 (379-454)||(3144630-3144705)
chr4 (395-454)||(20743272-20743331)
chr4 (377-454)||(24343513-24343590)
chr4 (408-453)||(31243555-31243600)
chr4 (409-454)||(39507127-39507172)
chr4 (403-454)||(34515876-34515927)
chr4 (398-454)||(30520433-30520490)
chr4 (404-453)||(53968553-53968602)
chr4 (414-454)||(7424676-7424716)
chr4 (411-451)||(49659533-49659573)
chr4 (409-453)||(50848311-50848355)
chr4 (411-454)||(7012072-7012115)
chr4 (404-455)||(19230312-19230363)
chr4 (396-454)||(17876161-17876219)
chr4 (408-454)||(18513248-18513294)
chr4 (403-453)||(29088244-29088294)
chr4 (409-463)||(32910548-32910602)
chr4 (377-430)||(944644-944697)
chr4 (409-454)||(5654599-5654644)
chr4 (404-457)||(6273947-6274000)
[»] chr2 (20 HSPs)
chr2 (396-463)||(38919203-38919270)
chr2 (404-457)||(23354655-23354708)
chr2 (404-453)||(25544488-25544537)
chr2 (403-454)||(10535761-10535812)
chr2 (396-462)||(37986777-37986843)
chr2 (408-457)||(23355002-23355051)
chr2 (407-455)||(34006997-34007045)
chr2 (407-454)||(24011042-24011089)
chr2 (407-453)||(4229414-4229460)
chr2 (396-454)||(8817451-8817509)
chr2 (404-450)||(11308007-11308053)
chr2 (404-454)||(12748690-12748740)
chr2 (404-454)||(19573984-19574034)
chr2 (408-456)||(23406872-23406920)
chr2 (414-454)||(31026701-31026741)
chr2 (407-454)||(6249205-6249252)
chr2 (415-454)||(30298461-30298500)
chr2 (394-455)||(6698452-6698514)
chr2 (408-454)||(18570978-18571024)
chr2 (415-453)||(22085011-22085049)
[»] chr7 (19 HSPs)
chr7 (378-454)||(17780061-17780137)
chr7 (404-484)||(22683758-22683837)
chr7 (377-463)||(7133254-7133340)
chr7 (404-453)||(29812667-29812716)
chr7 (377-454)||(38804531-38804608)
chr7 (396-454)||(4017789-4017847)
chr7 (404-454)||(12278841-12278891)
chr7 (404-454)||(23751906-23751956)
chr7 (407-457)||(18233604-18233654)
chr7 (404-454)||(23930225-23930275)
chr7 (403-452)||(8239052-8239101)
chr7 (407-452)||(21140988-21141033)
chr7 (396-456)||(10230068-10230128)
chr7 (407-454)||(38134412-38134459)
chr7 (407-453)||(23128667-23128713)
chr7 (404-454)||(43249999-43250049)
chr7 (409-454)||(23151571-23151615)
chr7 (407-452)||(27732245-27732290)
chr7 (409-454)||(32855360-32855405)
[»] chr6 (17 HSPs)
chr6 (383-454)||(34446571-34446642)
chr6 (404-454)||(6389749-6389799)
chr6 (411-454)||(19602191-19602234)
chr6 (404-454)||(12235522-12235572)
chr6 (404-454)||(17168466-17168516)
chr6 (398-451)||(2153884-2153937)
chr6 (405-454)||(6299518-6299567)
chr6 (405-454)||(6306328-6306377)
chr6 (404-454)||(12086348-12086398)
chr6 (380-454)||(26247432-26247506)
chr6 (408-453)||(34895041-34895086)
chr6 (409-457)||(7569176-7569224)
chr6 (413-452)||(8389484-8389523)
chr6 (407-450)||(13364711-13364754)
chr6 (408-451)||(22965914-22965957)
chr6 (408-451)||(23822436-23822479)
chr6 (409-447)||(4420187-4420225)
[»] chr8 (19 HSPs)
chr8 (404-453)||(39820436-39820485)
chr8 (404-463)||(13845231-13845290)
chr8 (404-463)||(35431143-35431202)
chr8 (403-454)||(3658153-3658204)
chr8 (403-454)||(9936820-9936871)
chr8 (396-451)||(16869710-16869765)
chr8 (414-452)||(12559119-12559157)
chr8 (408-453)||(28883885-28883930)
chr8 (404-453)||(40063958-40064007)
chr8 (404-463)||(13009496-13009555)
chr8 (407-454)||(33382025-33382072)
chr8 (404-454)||(1676718-1676768)
chr8 (404-457)||(14679337-14679388)
chr8 (404-454)||(44067522-44067572)
chr8 (396-453)||(3911117-3911174)
chr8 (407-452)||(4786344-4786389)
chr8 (398-455)||(8017491-8017548)
chr8 (413-450)||(26507450-26507487)
chr8 (407-452)||(31580133-31580178)
[»] chr1 (16 HSPs)
chr1 (377-454)||(42004923-42005000)
chr1 (396-463)||(40747768-40747835)
chr1 (404-454)||(6936403-6936453)
chr1 (407-452)||(12040688-12040734)
chr1 (9-42)||(20141512-20141545)
chr1 (402-454)||(48415726-48415779)
chr1 (404-463)||(6573986-6574045)
chr1 (407-454)||(19637774-19637821)
chr1 (404-454)||(21145472-21145523)
chr1 (396-454)||(11634119-11634177)
chr1 (414-452)||(21038091-21038129)
chr1 (404-454)||(22794081-22794131)
chr1 (409-454)||(7988459-7988504)
chr1 (407-452)||(36878469-36878514)
chr1 (406-463)||(39101187-39101244)
chr1 (407-452)||(52903257-52903302)
[»] scaffold0049 (1 HSPs)
scaffold0049 (408-455)||(56927-56974)
[»] scaffold0598 (1 HSPs)
scaffold0598 (404-454)||(8056-8106)
[»] scaffold0295 (1 HSPs)
scaffold0295 (8-42)||(18512-18546)
[»] scaffold0007 (1 HSPs)
scaffold0007 (396-462)||(225263-225329)
[»] scaffold0199 (1 HSPs)
scaffold0199 (404-454)||(1955-2005)


Alignment Details
Target: chr3 (Bit Score: 395; Significance: 0; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 42 - 628
Target Start/End: Complemental strand, 25892874 - 25892292
Alignment:
Q  42 ctaacaaacacactcaaataagataaacatcattgcttatctcgtatttaattaccacaagaaacaaaacttatcgagtaatgatctcagtaacgaagat 141  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25892874 ctaacaaacacattcaaataagataaacatcattgcttatctcgtatttaattaccacaagaaacaaaacttatcgagtaatgatctcagtaacgaagat 25892775  T
Q  142 agcaacaggctggagcataataattggagtgtcaatataaatagcgagttttacttaacatgttcacataatttctatctacttgcaccatgttttactt 241  Q
    |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25892774 agcaacaggctggagcataataattggagtgtcaatataaatagagaattttacttaacatgttcacataatttctatctacttgcaccatgttttactt 25892675  T
Q  242 tatcactgtagtatgttttgcaagtacaccttcctgtttggaaaaggagtgcacgaccagaggcacatatagcataaacgcttgactt-gaagactatga 340  Q
    ||||||| |||||||||||||| ||||||||   ||||||||||||||||||||||||||||||||  ||||||||||| |||||||| ||| |||||||    
T  25892674 tatcactatagtatgttttgcaggtacacct---tgtttggaaaaggagtgcacgaccagaggcac--atagcataaacacttgacttagaaaactatga 25892580  T
Q  341 accacagatactcctcgaaatcagcgtatcccaaaatcggacacgcgttgatgttcgacactaacacgacacctatgattacactgaattatatcatttt 440  Q
    | ||| ||| |||||||||||    || |     | ||| | |||||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||    
T  25892579 atcacggattctcctcgaaatagatgttttttggagtcgaatacgcgttggtgtccgacactgacacgacacctatgattacactgaattatatcatttt 25892480  T
Q  441 cttaaattattatctgtttcggttgtcggggtctttgttgtgtccgatattcgtgtcggtttttgtgcttcatagcttgaagatcatatcaccgatccag 540  Q
    ||||||||||||| |||||||| ||||||| ||||||| ||||||| ||||||||||| ||| |||  ||||||||||||||| ||||||||| || |||    
T  25892479 cttaaattattatttgtttcggctgtcgggatctttgtcgtgtccggtattcgtgtcgatttctgtatttcatagcttgaagaacatatcaccaatgcag 25892380  T
Q  541 gtgataaatctcataaattcacacaagaacaagatccttattgaatctttcttttggatcaatttatcttctcaaatttacaaaacag 628  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||    
T  25892379 gtgataaatctcataaattcacacaagaacaagatccttaatgaatctttcttttggatcaatttatcctctcaaatttacaaaacag 25892292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 42 - 177
Target Start/End: Complemental strand, 25911356 - 25911221
Alignment:
Q  42 ctaacaaacacactcaaataagataaacatcattgcttatctcgtatttaattaccacaagaaacaaaacttatcgagtaatgatctcagtaacgaagat 141  Q
    |||||||||| |||||||||| |||||||| ||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  25911356 ctaacaaacaaactcaaataaaataaacataattgcttatcttgtatttaattaccacaagaaacaaaacttagcgagtaatgatctcagtaacgaagat 25911257  T
Q  142 agcaacaggctggagcataataattggagtgtcaat 177  Q
    ||||||||||||||||||||||||||||||||||||    
T  25911256 agcaacaggctggagcataataattggagtgtcaat 25911221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 516 - 628
Target Start/End: Complemental strand, 25906770 - 25906660
Alignment:
Q  516 cttgaagatcatatcaccgatccaggtgataaatctcataaattcacacaagaacaagatccttattgaatctttcttttggatcaatttatcttctcaa 615  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||  || |||||||||||||| ||||||    
T  25906770 cttgaagatcatatcaccgatccaggtgataaatcacataaattcacacaagaacaagatccttattgaatctt--ttatggatcaatttatcctctcaa 25906673  T
Q  616 atttacaaaacag 628  Q
    |||||||||||||    
T  25906672 atttacaaaacag 25906660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 629 - 756
Target Start/End: Complemental strand, 25892268 - 25892142
Alignment:
Q  629 aagaatatcaaatagtacaatcccttcatcaaaatttatannnnnnngtaaagatccatcaaaactaataaaagacatataaattgacttaaatattctt 728  Q
    ||||||||||||||||| ||||||||||||||||||||||       |||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  25892268 aagaatatcaaatagtataatcccttcatcaaaatttatatttttt-gtaaagatccatcaaaactaataaaagacatatagattgacttaaatattctt 25892170  T
Q  729 tcgatttattaggacatacatacaatct 756  Q
    ||| |||||||||||| |||||||||||    
T  25892169 tcgctttattaggacaaacatacaatct 25892142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 47 - 133
Target Start/End: Complemental strand, 25906921 - 25906835
Alignment:
Q  47 aaacacactcaaataagataaacatcattgcttatctcgtatttaattaccacaagaaacaaaacttatcgagtaatgatctcagta 133  Q
    ||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| |||| |  |||||||||    
T  25906921 aaacacactcaaataagataaacattattgctaatctcgtatttaattaccacaagaaacaaaacttattgagttacaatctcagta 25906835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 677 - 756
Target Start/End: Complemental strand, 25906592 - 25906513
Alignment:
Q  677 taaagatccatcaaaactaataaaagacatataaattgacttaaatattctttcgatttattaggacatacatacaatct 756  Q
    |||||||||||||||||||||||||||| |||  ||||||||||||||||||| | |||||||||||| |||||||||||    
T  25906592 taaagatccatcaaaactaataaaagacgtatcgattgacttaaatattcttttgctttattaggacaaacatacaatct 25906513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 406 - 452
Target Start/End: Complemental strand, 1830397 - 1830351
Alignment:
Q  406 acgacacctatgattacactgaattatatcattttcttaaattatta 452  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||    
T  1830397 acgacacctatgattacactgaattatgtcattttcttaaattatta 1830351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 377 - 454
Target Start/End: Original strand, 12704633 - 12704710
Alignment:
Q  377 tcggacacgcgttgatgttcgacactaacacgacacctatgattacactgaattatatcattttcttaaattattatc 454  Q
    ||||||| |||||| ||| ||||||  |||||||||||||||||||| |||||||| ||||||| | |||||||||||    
T  12704633 tcggacatgcgttggtgtccgacaccgacacgacacctatgattacattgaattatgtcattttttcaaattattatc 12704710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 381 - 457
Target Start/End: Complemental strand, 25326505 - 25326429
Alignment:
Q  381 acacgcgttgatgttcgacactaacacgacacctatgattacactgaattatatcattttcttaaattattatctgt 457  Q
    |||||||| | ||| |||||| ||||||||| |||| |||||||| |||||||| ||||| ||||||||||||||||    
T  25326505 acacgcgtcggtgtccgacaccaacacgacatctataattacactaaattatattatttttttaaattattatctgt 25326429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 404 - 454
Target Start/End: Complemental strand, 15864889 - 15864839
Alignment:
Q  404 acacgacacctatgattacactgaattatatcattttcttaaattattatc 454  Q
    |||||||||||||||||||||| |||||||||||||| | |||||||||||    
T  15864889 acacgacacctatgattacactaaattatatcattttttcaaattattatc 15864839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 404 - 453
Target Start/End: Original strand, 3730168 - 3730217
Alignment:
Q  404 acacgacacctatgattacactgaattatatcattttcttaaattattat 453  Q
    ||||||||||||||||||||||||||||| ||||| ||| ||||||||||    
T  3730168 acacgacacctatgattacactgaattatgtcattatctcaaattattat 3730217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 407 - 460
Target Start/End: Complemental strand, 20691372 - 20691319
Alignment:
Q  407 cgacacctatgattacactgaattatatcattttcttaaattattatctgtttc 460  Q
    |||||| ||||||||||||||||||| ||||||||| ||||||||||| |||||    
T  20691372 cgacacatatgattacactgaattatgtcattttctcaaattattatcagtttc 20691319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 377 - 454
Target Start/End: Complemental strand, 25074872 - 25074795
Alignment:
Q  377 tcggacacgcgttgatgttcgacactaacacgacacctatgattacactgaattatatcattttcttaaattattatc 454  Q
    |||||||||||||| |||  |||||  |||| || |||||||||||||| |||||| ||||||||| |||||||||||    
T  25074872 tcggacacgcgttggtgtcagacaccgacacaacgcctatgattacactcaattatgtcattttctcaaattattatc 25074795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 404 - 457
Target Start/End: Complemental strand, 34189483 - 34189430
Alignment:
Q  404 acacgacacctatgattacactgaattatatcattttcttaaattattatctgt 457  Q
    |||||||||||| |||||||||||| ||| ||||||||| ||||||||||||||    
T  34189483 acacgacacctacgattacactgaaatatgtcattttctcaaattattatctgt 34189430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 398 - 454
Target Start/End: Original strand, 25652028 - 25652084
Alignment:
Q  398 acactaacacgacacctatgattacactgaattatatcattttcttaaattattatc 454  Q
    ||||| |||| |||||||| | ||||||||||||||||||||||| |||||||||||    
T  25652028 acactgacacaacacctataactacactgaattatatcattttctcaaattattatc 25652084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 404 - 486
Target Start/End: Original strand, 14223856 - 14223939
Alignment:
Q  404 acacgacacctatgattacactgaattatatcattttcttaaattattatctgtttcgg-ttgtcggggtctttgttgtgtccg 486  Q
    ||||||||| ||||| |||||| ||||||||| |||||| |||||||||||||| ||||  |||||| |||| ||| |||||||    
T  14223856 acacgacacttatgaatacactaaattatatcgttttctcaaattattatctgtgtcggcgtgtcggtgtctgtgtcgtgtccg 14223939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 407 - 454
Target Start/End: Original strand, 40150577 - 40150624
Alignment:
Q  407 cgacacctatgattacactgaattatatcattttcttaaattattatc 454  Q
    |||||| |||||||||| |||||||||||||||||| |||||||||||    
T  40150577 cgacacatatgattacattgaattatatcattttctcaaattattatc 40150624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 404 - 454
Target Start/End: Complemental strand, 52369831 - 52369781
Alignment:
Q  404 acacgacacctatgattacactgaattatatcattttcttaaattattatc 454  Q
    |||||||||||||||||||| |||||||| | ||||||| |||||||||||    
T  52369831 acacgacacctatgattacattgaattatgtaattttctcaaattattatc 52369781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 406 - 455
Target Start/End: Complemental strand, 21149121 - 21149072
Alignment:
Q  406 acgacacctatgattacactgaattatatcattttcttaaattattatct 455  Q
    |||||| || ||||||||||||||||| ||||||||| ||||||||||||    
T  21149121 acgacatctttgattacactgaattatgtcattttctcaaattattatct 21149072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 176 - 220
Target Start/End: Complemental strand, 25906835 - 25906791
Alignment:
Q  176 atataaatagcgagttttacttaacatgttcacataatttctatc 220  Q
    |||||||||| |||||||||||||||| ||||||||||| |||||    
T  25906835 atataaatagggagttttacttaacatattcacataattgctatc 25906791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 404 - 439
Target Start/End: Complemental strand, 12100325 - 12100290
Alignment:
Q  404 acacgacacctatgattacactgaattatatcattt 439  Q
    ||||||||||||| ||||||||||||||||||||||    
T  12100325 acacgacacctattattacactgaattatatcattt 12100290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 419 - 462
Target Start/End: Original strand, 16789668 - 16789711
Alignment:
Q  419 ttacactgaattatatcattttcttaaattattatctgtttcgg 462  Q
    |||||||||||||| ||||||||| |||||||||||||| ||||    
T  16789668 ttacactgaattatgtcattttctcaaattattatctgtgtcgg 16789711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 404 - 454
Target Start/End: Original strand, 24205044 - 24205094
Alignment:
Q  404 acacgacacctatgattacactgaattatatcattttcttaaattattatc 454  Q
    ||||||||| ||| ||||||||| ||||| ||||||||| |||||||||||    
T  24205044 acacgacacttataattacactgtattatgtcattttctcaaattattatc 24205094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 404 - 454
Target Start/End: Complemental strand, 25365518 - 25365468
Alignment:
Q  404 acacgacacctatgattacactgaattatatcattttcttaaattattatc 454  Q
    ||||||||| ||||||||||| ||||||| |||| |||| |||||||||||    
T  25365518 acacgacacttatgattacaccgaattatgtcatattctcaaattattatc 25365468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 407 - 452
Target Start/End: Original strand, 8039841 - 8039886
Alignment:
Q  407 cgacacctatgattacactgaattatatcattttcttaaattatta 452  Q
    |||||| ||| ||||||||||||||||| ||||||| |||||||||    
T  8039841 cgacacatataattacactgaattatataattttctcaaattatta 8039886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 407 - 452
Target Start/End: Complemental strand, 8383310 - 8383265
Alignment:
Q  407 cgacacctatgattacactgaattatatcattttcttaaattatta 452  Q
    |||||| ||| ||||||||||||||||| ||||||| |||||||||    
T  8383310 cgacacttataattacactgaattatatgattttctcaaattatta 8383265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 382 - 463
Target Start/End: Complemental strand, 21861647 - 21861566
Alignment:
Q  382 cacgcgttgatgttcgacactaacacgacacctatgattacactgaattatatcattttcttaaattattatctgtttcggt 463  Q
    ||||||| | |||| ||||| ||| | |||| ||||||||||||||||||| |||||||   ||||| |||||||| |||||    
T  21861647 cacgcgtcggtgtttgacaccaacgctacacttatgattacactgaattatgtcatttttccaaattgttatctgtgtcggt 21861566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 404 - 457
Target Start/End: Complemental strand, 27903688 - 27903635
Alignment:
Q  404 acacgacacctatgattacactgaattatatcattttcttaaattattatctgt 457  Q
    |||| |||| |||||||||| | ||||||||| |||||| ||||||||||||||    
T  27903688 acacaacacttatgattacattaaattatatcgttttctcaaattattatctgt 27903635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0778 (Bit Score: 161; Significance: 2e-85; HSPs: 3)
Name: scaffold0778
Description:

Target: scaffold0778; HSP #1
Raw Score: 161; E-Value: 2e-85
Query Start/End: Original strand, 396 - 628
Target Start/End: Complemental strand, 4470 - 4238
Alignment:
Q  396 cgacactaacacgacacctatgattacactgaattatatcattttcttaaattattatctgtttcggttgtcggggtctttgttgtgtccgatattcgtg 495  Q
    |||||||| ||||||| ||||||| ||||||||||||||||| |||||||||||||||||||||||| |||||| |||||||| || | || ||||||||    
T  4470 cgacactagcacgacatctatgatgacactgaattatatcatattcttaaattattatctgtttcggctgtcggagtctttgtcgtattcggtattcgtg 4371  T
Q  496 tcggtttttgtgcttcatagcttgaagatcatatcaccgatccaggtgataaatctcataaattcacacaagaacaagatccttattgaatctttctttt 595  Q
    ||| ||| |||| ||| ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  4370 tcgatttctgtgattcttagcttgaagatattatcaccgatccaggtgataaatctcataaattcacacaagaacaagatccttattgaatcgttctttt 4271  T
Q  596 ggatcaatttatcttctcaaatttacaaaacag 628  Q
    ||||||||||||| |||||||||||||||||||    
T  4270 ggatcaatttatcctctcaaatttacaaaacag 4238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0778; HSP #2
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 629 - 756
Target Start/End: Complemental strand, 4214 - 4088
Alignment:
Q  629 aagaatatcaaatagtacaatcccttcatcaaaatttatannnnnnngtaaagatccatcaaaactaataaaagacatataaattgacttaaatattctt 728  Q
    ||||||||||||||||| ||||||||||||||||||||||       |||||||||||| ||||||||||||||||||||| ||||||||||||||||||    
T  4214 aagaatatcaaatagtataatcccttcatcaaaatttatatttttt-gtaaagatccataaaaactaataaaagacatatagattgacttaaatattctt 4116  T
Q  729 tcgatttattaggacatacatacaatct 756  Q
    ||| |||||||||| |||||||||||||    
T  4115 tcgctttattaggatatacatacaatct 4088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0778; HSP #3
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 49 - 121
Target Start/End: Complemental strand, 756 - 684
Alignment:
Q  49 acacactcaaataagataaacatcattgcttatctcgtatttaattaccacaagaaacaaaacttatcgagta 121  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  756 acacactcaaataagataaacatcattgcttatcttgtatttaattaccacaagaaacaaaacttatcgagta 684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1192 (Bit Score: 86; Significance: 1e-40; HSPs: 3)
Name: scaffold1192
Description:

Target: scaffold1192; HSP #1
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 629 - 756
Target Start/End: Original strand, 1826 - 1952
Alignment:
Q  629 aagaatatcaaatagtacaatcccttcatcaaaatttatannnnnnngtaaagatccatcaaaactaataaaagacatataaattgacttaaatattctt 728  Q
    ||||||||||||||||| ||||||||||||||||||||||       |||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  1826 aagaatatcaaatagtataatcccttcatcaaaatttatatttttt-gtaaagatccatcaaaactaataaaagacatatagattgacttaaatattctt 1924  T
Q  729 tcgatttattaggacatacatacaatct 756  Q
    ||| |||||||||||| |||||||||||    
T  1925 tcgctttattaggacacacatacaatct 1952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1192; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 47 - 133
Target Start/End: Original strand, 1598 - 1684
Alignment:
Q  47 aaacacactcaaataagataaacatcattgcttatctcgtatttaattaccacaagaaacaaaacttatcgagtaatgatctcagta 133  Q
    ||||||| |||||||||||||||||||||| | |||||||||||||||||| |||||||||||||||||||||| |  |||||||||    
T  1598 aaacacagtcaaataagataaacatcattgttaatctcgtatttaattaccccaagaaacaaaacttatcgagttacaatctcagta 1684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1192; HSP #3
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 181 - 263
Target Start/End: Original strand, 1691 - 1773
Alignment:
Q  181 aatagcgagttttacttaacatgttcacataatttctatctacttgcaccatgttttactttatcactgtagtatgttttgca 263  Q
    ||||| |||||||||||||||| | | ||||||| ||||||||||||||||||||||||||||||||  ||||||||||||||    
T  1691 aatagggagttttacttaacatatccccataattgctatctacttgcaccatgttttactttatcaccatagtatgttttgca 1773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 1e-18; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 377 - 453
Target Start/End: Complemental strand, 43554604 - 43554528
Alignment:
Q  377 tcggacacgcgttgatgttcgacactaacacgacacctatgattacactgaattatatcattttcttaaattattat 453  Q
    |||||||||||| | ||| ||||||  |||||||||||||||||||||| |||||||||||||||| ||||||||||    
T  43554604 tcggacacgcgtcggtgtccgacaccgacacgacacctatgattacactaaattatatcattttctcaaattattat 43554528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 377 - 442
Target Start/End: Original strand, 26205736 - 26205801
Alignment:
Q  377 tcggacacgcgttgatgttcgacactaacacgacacctatgattacactgaattatatcattttct 442  Q
    ||||| |||||||| ||| |||||| |||||||||||||||||||||||||||||| |||||||||    
T  26205736 tcggatacgcgttggtgtccgacaccaacacgacacctatgattacactgaattatgtcattttct 26205801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 396 - 453
Target Start/End: Complemental strand, 25863268 - 25863211
Alignment:
Q  396 cgacactaacacgacacctatgattacactgaattatatcattttcttaaattattat 453  Q
    ||||||| ||||||||| ||| ||||||||||||||||||||||||| ||||||||||    
T  25863268 cgacactgacacgacacttataattacactgaattatatcattttctcaaattattat 25863211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 404 - 451
Target Start/End: Original strand, 39696002 - 39696049
Alignment:
Q  404 acacgacacctatgattacactgaattatatcattttcttaaattatt 451  Q
    |||||||||||||||||||||| |||||||||||||||| ||||||||    
T  39696002 acacgacacctatgattacactaaattatatcattttctcaaattatt 39696049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 404 - 452
Target Start/End: Complemental strand, 31264494 - 31264446
Alignment:
Q  404 acacgacacctatgattacactgaattatatcattttcttaaattatta 452  Q
    ||||||||| ||||||||||||||||||| ||||||||| |||||||||    
T  31264494 acacgacacttatgattacactgaattatgtcattttctcaaattatta 31264446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 404 - 454
Target Start/End: Original strand, 7997169 - 7997219
Alignment:
Q  404 acacgacacctatgattacactgaattatatcattttcttaaattattatc 454  Q
    ||||||||| ||| ||||||||| ||||||||||||||| |||||||||||    
T  7997169 acacgacacttataattacactgtattatatcattttctcaaattattatc 7997219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 404 - 454
Target Start/End: Original strand, 18607100 - 18607150
Alignment:
Q  404 acacgacacctatgattacactgaattatatcattttcttaaattattatc 454  Q
    |||||||||||||||||||| |||||||| | ||||||| |||||||||||    
T  18607100 acacgacacctatgattacattgaattatgttattttctcaaattattatc 18607150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 418 - 454
Target Start/End: Complemental strand, 18162097 - 18162061
Alignment:
Q  418 attacactgaattatatcattttcttaaattattatc 454  Q
    ||||||||||||||| |||||||||||||||||||||    
T  18162097 attacactgaattatgtcattttcttaaattattatc 18162061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 409 - 452
Target Start/End: Original strand, 15410456 - 15410499
Alignment:
Q  409 acacctatgattacactgaattatatcattttcttaaattatta 452  Q
    |||| |||||||||||||||| |||| |||||||||||||||||    
T  15410456 acacatatgattacactgaatcatataattttcttaaattatta 15410499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 414 - 464
Target Start/End: Original strand, 2577193 - 2577243
Alignment:
Q  414 tatgattacactgaattatatcattttcttaaattattatctgtttcggtt 464  Q
    |||||||||||| |||||| ||||||||| ||||||||||| || ||||||    
T  2577193 tatgattacactaaattatgtcattttctcaaattattatcggtgtcggtt 2577243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 404 - 454
Target Start/End: Original strand, 5467981 - 5468031
Alignment:
Q  404 acacgacacctatgattacactgaattatatcattttcttaaattattatc 454  Q
    ||||||||||||| ||||||||||||||| | ||||| | |||||||||||    
T  5467981 acacgacacctataattacactgaattatgtgattttatcaaattattatc 5468031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 378 - 452
Target Start/End: Original strand, 14574027 - 14574100
Alignment:
Q  378 cggacacgcgttgatgttcgacactaacacgacacctatgattacactgaattatatcattttcttaaattatta 452  Q
    ||||||||||| |  || ||||||| |||||| |||||| ||||||||||||||||||||||  | |||||||||    
T  14574027 cggacacgcgtcggcgtccgacactgacacga-acctataattacactgaattatatcatttcatcaaattatta 14574100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 407 - 452
Target Start/End: Original strand, 28588680 - 28588725
Alignment:
Q  407 cgacacctatgattacactgaattatatcattttcttaaattatta 452  Q
    |||||||||| ||||||||||||||| | ||||||| |||||||||    
T  28588680 cgacacctataattacactgaattatgtgattttctcaaattatta 28588725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 418 - 463
Target Start/End: Complemental strand, 34276914 - 34276869
Alignment:
Q  418 attacactgaattatatcattttcttaaattattatctgtttcggt 463  Q
    ||||||||||||| ||| ||||||||||||||||| |||| |||||    
T  34276914 attacactgaattttatgattttcttaaattattaactgtgtcggt 34276869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1390 (Bit Score: 48; Significance: 5e-18; HSPs: 1)
Name: scaffold1390
Description:

Target: scaffold1390; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 9 - 56
Target Start/End: Original strand, 1689 - 1736
Alignment:
Q  9 caaattccatagccataataagtcccgtaatttctaacaaacacactc 56  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  1689 caaattccatagccataataagtcccgtaatttctaacaaacacactc 1736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 5e-18; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 379 - 454
Target Start/End: Original strand, 3144630 - 3144705
Alignment:
Q  379 ggacacgcgttgatgttcgacactaacacgacacctatgattacactgaattatatcattttcttaaattattatc 454  Q
    |||||||||||| |||  |||||  |||||||||||||||||||||| |||||||||||||||| |||||||||||    
T  3144630 ggacacgcgttggtgtctgacaccgacacgacacctatgattacactaaattatatcattttctgaaattattatc 3144705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 395 - 454
Target Start/End: Original strand, 20743272 - 20743331
Alignment:
Q  395 tcgacactaacacgacacctatgattacactgaattatatcattttcttaaattattatc 454  Q
    |||||||  |||| |||||||||||||||||||||||| ||||||||| |||||||||||    
T  20743272 tcgacaccgacacaacacctatgattacactgaattatgtcattttctcaaattattatc 20743331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 377 - 454
Target Start/End: Complemental strand, 24343590 - 24343513
Alignment:
Q  377 tcggacacgcgttgatgttcgacactaacacgacacctatgattacactgaattatatcattttcttaaattattatc 454  Q
    |||||||||||| | |||  |||||  ||||||||||||| ||||||||||||||| | ||||||| |||||||||||    
T  24343590 tcggacacgcgtcggtgtcggacaccgacacgacacctataattacactgaattatgtaattttctcaaattattatc 24343513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 408 - 453
Target Start/End: Original strand, 31243555 - 31243600
Alignment:
Q  408 gacacctatgattacactgaattatatcattttcttaaattattat 453  Q
    ||||||||||||||||||||||||| ||||||||| ||||||||||    
T  31243555 gacacctatgattacactgaattatgtcattttctcaaattattat 31243600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 409 - 454
Target Start/End: Original strand, 39507127 - 39507172
Alignment:
Q  409 acacctatgattacactgaattatatcattttcttaaattattatc 454  Q
    ||||||||||||||||| ||||||||||||||| ||||||||||||    
T  39507127 acacctatgattacacttaattatatcattttcataaattattatc 39507172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 403 - 454
Target Start/End: Original strand, 34515876 - 34515927
Alignment:
Q  403 aacacgacacctatgattacactgaattatatcattttcttaaattattatc 454  Q
    |||| |||||||||| |||||||||||||| |||||||||| ||||||||||    
T  34515876 aacatgacacctatgtttacactgaattatgtcattttcttgaattattatc 34515927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 398 - 454
Target Start/End: Original strand, 30520433 - 30520490
Alignment:
Q  398 acactaacacgacacctatgattacactgaattatatcattttctt-aaattattatc 454  Q
    ||||| |||| |||||||||||||||||||||||| ||||||| || |||||||||||    
T  30520433 acactgacactacacctatgattacactgaattatgtcatttttttcaaattattatc 30520490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 404 - 453
Target Start/End: Complemental strand, 53968602 - 53968553
Alignment:
Q  404 acacgacacctatgattacactgaattatatcattttcttaaattattat 453  Q
    |||||||| |||||||  ||||||||||| ||||||||||||||||||||    
T  53968602 acacgacatctatgatatcactgaattatgtcattttcttaaattattat 53968553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 414 - 454
Target Start/End: Complemental strand, 7424716 - 7424676
Alignment:
Q  414 tatgattacactgaattatatcattttcttaaattattatc 454  Q
    |||||||||||| |||||||| |||||||||||||||||||    
T  7424716 tatgattacactcaattatattattttcttaaattattatc 7424676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 411 - 451
Target Start/End: Original strand, 49659533 - 49659573
Alignment:
Q  411 acctatgattacactgaattatatcattttcttaaattatt 451  Q
    ||||||||||||||| |||||||||||||||| ||||||||    
T  49659533 acctatgattacactaaattatatcattttctcaaattatt 49659573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 409 - 453
Target Start/End: Original strand, 50848311 - 50848355
Alignment:
Q  409 acacctatgattacactgaattatatcattttcttaaattattat 453  Q
    ||||||| |||||||||||||||||||||||| | ||||||||||    
T  50848311 acacctacgattacactgaattatatcattttttcaaattattat 50848355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 411 - 454
Target Start/End: Complemental strand, 7012115 - 7012072
Alignment:
Q  411 acctatgattacactgaattatatcattttcttaaattattatc 454  Q
    ||||||||| |||||||||||| ||||||||| |||||||||||    
T  7012115 acctatgatcacactgaattatgtcattttctcaaattattatc 7012072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 404 - 455
Target Start/End: Original strand, 19230312 - 19230363
Alignment:
Q  404 acacgacacctatgattacactgaattatatcattttcttaaattattatct 455  Q
    ||||||||||||| |||||| |||||||| | ||||||| ||||||||||||    
T  19230312 acacgacacctataattacattgaattatgttattttctcaaattattatct 19230363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 396 - 454
Target Start/End: Complemental strand, 17876219 - 17876161
Alignment:
Q  396 cgacactaacacgacacctatgattacactgaattatatcattttcttaaattattatc 454  Q
    ||||||| ||||| ||| |||||||||||| |||||| ||||||||| |||||| ||||    
T  17876219 cgacactgacacggcacatatgattacactaaattatgtcattttctaaaattagtatc 17876161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 408 - 454
Target Start/End: Original strand, 18513248 - 18513294
Alignment:
Q  408 gacacctatgattacactgaattatatcattttcttaaattattatc 454  Q
    ||||| |||||||||| |||||||| ||||||||| |||||||||||    
T  18513248 gacacatatgattacattgaattatgtcattttctcaaattattatc 18513294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 403 - 453
Target Start/End: Original strand, 29088244 - 29088294
Alignment:
Q  403 aacacgacacctatgattacactgaattatatcattttcttaaattattat 453  Q
    |||||||| ||||| ||||||||| ||| ||||||||||| ||||||||||    
T  29088244 aacacgacgcctataattacactgtattttatcattttctcaaattattat 29088294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 409 - 463
Target Start/End: Complemental strand, 32910602 - 32910548
Alignment:
Q  409 acacctatgattacactgaattatatcattttcttaaattattatctgtttcggt 463  Q
    ||||| || ||||||||||||||| ||||||||| ||||||||||| || |||||    
T  32910602 acacccataattacactgaattatgtcattttctcaaattattatccgtgtcggt 32910548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 377 - 430
Target Start/End: Original strand, 944644 - 944697
Alignment:
Q  377 tcggacacgcgttgatgttcgacactaacacgacacctatgattacactgaatt 430  Q
    ||||||||||||   ||||||||||| ||||||||||||| |||||||| ||||    
T  944644 tcggacacgcgtctgtgttcgacactgacacgacacctataattacactaaatt 944697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 409 - 454
Target Start/End: Original strand, 5654599 - 5654644
Alignment:
Q  409 acacctatgattacactgaattatatcattttcttaaattattatc 454  Q
    |||| |||||||||| |||||||| ||||||||| |||||||||||    
T  5654599 acacgtatgattacattgaattatgtcattttctcaaattattatc 5654644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 404 - 457
Target Start/End: Complemental strand, 6274000 - 6273947
Alignment:
Q  404 acacgacacctatgattacactgaattatatcattttcttaaattattatctgt 457  Q
    |||||||  |||| |||||||| |||||||||||||||| |||||||| |||||    
T  6274000 acacgacgactataattacactaaattatatcattttctcaaattattgtctgt 6273947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 5e-18; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 396 - 463
Target Start/End: Complemental strand, 38919270 - 38919203
Alignment:
Q  396 cgacactaacacgacacctatgattacactgaattatatcattttcttaaattattatctgtttcggt 463  Q
    |||||||||||||||||||||||||||||| || |||| |||||||| |||||||||||||| |||||    
T  38919270 cgacactaacacgacacctatgattacactaaactataacattttctcaaattattatctgtatcggt 38919203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 404 - 457
Target Start/End: Original strand, 23354655 - 23354708
Alignment:
Q  404 acacgacacctatgattacactgaattatatcattttcttaaattattatctgt 457  Q
    |||||||||||||||||||||| |||||||||||||||| ||||||||||||||    
T  23354655 acacgacacctatgattacactaaattatatcattttctcaaattattatctgt 23354708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 404 - 453
Target Start/End: Complemental strand, 25544537 - 25544488
Alignment:
Q  404 acacgacacctatgattacactgaattatatcattttcttaaattattat 453  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  25544537 acacgacacctatgattacactgaattatatcattttctcaaattattat 25544488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 403 - 454
Target Start/End: Original strand, 10535761 - 10535812
Alignment:
Q  403 aacacgacacctatgattacactgaattatatcattttcttaaattattatc 454  Q
    |||||||||| ||||||||||||||||||| ||||||||| |||||||||||    
T  10535761 aacacgacacttatgattacactgaattatgtcattttctcaaattattatc 10535812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 396 - 462
Target Start/End: Complemental strand, 37986843 - 37986777
Alignment:
Q  396 cgacactaacacgacacctatgattacactgaattatatcattttcttaaattattatctgtttcgg 462  Q
    |||||| ||||||| ||||||||||||||| || ||||||||||| | |||||||||||||| ||||    
T  37986843 cgacaccaacacgatacctatgattacactcaaatatatcattttttcaaattattatctgtgtcgg 37986777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 408 - 457
Target Start/End: Original strand, 23355002 - 23355051
Alignment:
Q  408 gacacctatgattacactgaattatatcattttcttaaattattatctgt 457  Q
    ||||||||||||| |||| |||||||||||||||| ||||||||||||||    
T  23355002 gacacctatgattgcactaaattatatcattttctcaaattattatctgt 23355051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 407 - 455
Target Start/End: Original strand, 34006997 - 34007045
Alignment:
Q  407 cgacacctatgattacactgaattatatcattttcttaaattattatct 455  Q
    |||||||||||||||||||||||||| ||| ||||| ||||||||||||    
T  34006997 cgacacctatgattacactgaattatgtcaatttctcaaattattatct 34007045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 407 - 454
Target Start/End: Complemental strand, 24011089 - 24011042
Alignment:
Q  407 cgacacctatgattacactgaattatatcattttcttaaattattatc 454  Q
    ||||||||||||||||||| |||||| ||||||||| |||||||||||    
T  24011089 cgacacctatgattacactaaattatgtcattttctcaaattattatc 24011042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 407 - 453
Target Start/End: Original strand, 4229414 - 4229460
Alignment:
Q  407 cgacacctatgattacactgaattatatcattttcttaaattattat 453  Q
    |||||| ||||||||||||||||||| ||||| ||||||||||||||    
T  4229414 cgacacatatgattacactgaattatgtcattctcttaaattattat 4229460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 396 - 454
Target Start/End: Original strand, 8817451 - 8817509
Alignment:
Q  396 cgacactaacacgacacctatgattacactgaattatatcattttcttaaattattatc 454  Q
    |||||||  ||||||||  ||||||||||||||||||| ||| ||||||||||||||||    
T  8817451 cgacactggcacgacacaaatgattacactgaattataccatgttcttaaattattatc 8817509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 404 - 450
Target Start/End: Original strand, 11308007 - 11308053
Alignment:
Q  404 acacgacacctatgattacactgaattatatcattttcttaaattat 450  Q
    ||||||||||||||||||||||||||||| ||||||| | |||||||    
T  11308007 acacgacacctatgattacactgaattatgtcattttttcaaattat 11308053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 404 - 454
Target Start/End: Complemental strand, 12748740 - 12748690
Alignment:
Q  404 acacgacacctatgattacactgaattatatcattttcttaaattattatc 454  Q
    |||| |||||||||||||||||||| ||| ||||||||| |||||||||||    
T  12748740 acacaacacctatgattacactgaactatgtcattttctcaaattattatc 12748690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 404 - 454
Target Start/End: Complemental strand, 19574034 - 19573984
Alignment:
Q  404 acacgacacctatgattacactgaattatatcattttcttaaattattatc 454  Q
    ||||| ||||||| ||||||||||||||| | |||||||||||||||||||    
T  19574034 acacgccacctataattacactgaattatgttattttcttaaattattatc 19573984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 408 - 456
Target Start/End: Complemental strand, 23406920 - 23406872
Alignment:
Q  408 gacacctatgattacactgaattatatcattttcttaaattattatctg 456  Q
    ||||||||||||||  ||||||||| | |||||||||||||||||||||    
T  23406920 gacacctatgattattctgaattatgtaattttcttaaattattatctg 23406872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 414 - 454
Target Start/End: Complemental strand, 31026741 - 31026701
Alignment:
Q  414 tatgattacactgaattatatcattttcttaaattattatc 454  Q
    |||||||||| |||||||| |||||||||||||||||||||    
T  31026741 tatgattacattgaattatgtcattttcttaaattattatc 31026701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 407 - 454
Target Start/End: Complemental strand, 6249252 - 6249205
Alignment:
Q  407 cgacacctatgattacactgaattatatcattttcttaaattattatc 454  Q
    |||||||||||| ||||||||||||||  ||||||| |||||||||||    
T  6249252 cgacacctatgaatacactgaattataatattttctcaaattattatc 6249205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 415 - 454
Target Start/End: Original strand, 30298461 - 30298500
Alignment:
Q  415 atgattacactgaattatatcattttcttaaattattatc 454  Q
    |||||||||||||||||| ||||||| |||||||||||||    
T  30298461 atgattacactgaattatgtcattttattaaattattatc 30298500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 394 - 455
Target Start/End: Original strand, 6698452 - 6698514
Alignment:
Q  394 ttcgacactaacacgacacctatgattacactgaattatatca-ttttcttaaattattatct 455  Q
    |||||||| || ||||||| ||||||||||||||||||| ||| |||| | ||||||||||||    
T  6698452 ttcgacaccaatacgacacgtatgattacactgaattatttcacttttttcaaattattatct 6698514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 408 - 454
Target Start/End: Complemental strand, 18571024 - 18570978
Alignment:
Q  408 gacacctatgattacactgaattatatcattttcttaaattattatc 454  Q
    ||||| |||||||||| |||||||| ||||||||| |||||||||||    
T  18571024 gacacatatgattacattgaattatgtcattttctcaaattattatc 18570978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 415 - 453
Target Start/End: Complemental strand, 22085049 - 22085011
Alignment:
Q  415 atgattacactgaattatatcattttcttaaattattat 453  Q
    ||||||||||| |||||| ||||||||||||||||||||    
T  22085049 atgattacactaaattatgtcattttcttaaattattat 22085011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 3e-16; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 378 - 454
Target Start/End: Original strand, 17780061 - 17780137
Alignment:
Q  378 cggacacgcgttgatgttcgacactaacacgacacctatgattacactgaattatatcattttcttaaattattatc 454  Q
    ||||||||||| | ||||||||||  ||||||||||||| ||||||  ||||||| |||||||||||||||||||||    
T  17780061 cggacacgcgtcggtgttcgacaccgacacgacacctattattacatagaattatgtcattttcttaaattattatc 17780137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 404 - 484
Target Start/End: Original strand, 22683758 - 22683837
Alignment:
Q  404 acacgacacctatgattacactgaattatatcattttcttaaattattatctgtttcggttgtcggggtctttgttgtgtc 484  Q
    ||||||||||||||||| |||||||||||||||| |||| ||||||||||| || |||| |||||| |||| |||||||||    
T  22683758 acacgacacctatgattgcactgaattatatcatattctcaaattattatccgtctcgg-tgtcggtgtctgtgttgtgtc 22683837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 377 - 463
Target Start/End: Original strand, 7133254 - 7133340
Alignment:
Q  377 tcggacacgcgttgatgttcgacactaacacgacacctatgattacactgaattatatcattttcttaaattattatctgtttcggt 463  Q
    |||||||||||| | ||| ||||||  ||||  ||||||||||||||||||||||| ||||||||| ||||||| |||||| |||||    
T  7133254 tcggacacgcgtcggtgtccgacaccgacacaccacctatgattacactgaattatgtcattttctcaaattatcatctgtgtcggt 7133340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 404 - 453
Target Start/End: Original strand, 29812667 - 29812716
Alignment:
Q  404 acacgacacctatgattacactgaattatatcattttcttaaattattat 453  Q
    |||||||||||||||||||||| |||||||||||||||| ||||||||||    
T  29812667 acacgacacctatgattacactaaattatatcattttctcaaattattat 29812716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 377 - 454
Target Start/End: Original strand, 38804531 - 38804608
Alignment:
Q  377 tcggacacgcgttgatgttcgacactaacacgacacctatgattacactgaattatatcattttcttaaattattatc 454  Q
    |||||||| ||| | ||| |||||| |||||||||||||||||||| ||| ||||| ||||||||| |||||||||||    
T  38804531 tcggacacacgtcggtgtccgacaccaacacgacacctatgattaccctggattatgtcattttctgaaattattatc 38804608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 396 - 454
Target Start/End: Original strand, 4017789 - 4017847
Alignment:
Q  396 cgacactaacacgacacctatgattacactgaattatatcattttcttaaattattatc 454  Q
    |||||| |||||||||| |||||||||||| ||||||||| |||||| |||||||||||    
T  4017789 cgacaccaacacgacacttatgattacactaaattatatcgttttctcaaattattatc 4017847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 404 - 454
Target Start/End: Complemental strand, 12278891 - 12278841
Alignment:
Q  404 acacgacacctatgattacactgaattatatcattttcttaaattattatc 454  Q
    ||||||||| ||| ||||||||||||||| |||||||||||||||||||||    
T  12278891 acacgacacatataattacactgaattatgtcattttcttaaattattatc 12278841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 404 - 454
Target Start/End: Complemental strand, 23751956 - 23751906
Alignment:
Q  404 acacgacacctatgattacactgaattatatcattttcttaaattattatc 454  Q
    |||||||||||||||||||||| |||||||||||||| | |||||||||||    
T  23751956 acacgacacctatgattacactaaattatatcattttatcaaattattatc 23751906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 407 - 457
Target Start/End: Original strand, 18233604 - 18233654
Alignment:
Q  407 cgacacctatgattacactgaattatatcattttcttaaattattatctgt 457  Q
    |||||||||| ||||||||||||||| ||||||||| |||||| |||||||    
T  18233604 cgacacctataattacactgaattatgtcattttctcaaattactatctgt 18233654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 404 - 454
Target Start/End: Complemental strand, 23930275 - 23930225
Alignment:
Q  404 acacgacacctatgattacactgaattatatcattttcttaaattattatc 454  Q
    |||| |||||||||||||||||||||||| ||||||||| |||||| ||||    
T  23930275 acacaacacctatgattacactgaattatgtcattttctcaaattactatc 23930225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 403 - 452
Target Start/End: Original strand, 8239052 - 8239101
Alignment:
Q  403 aacacgacacctatgattacactgaattatatcattttcttaaattatta 452  Q
    |||||||||| ||| ||||||||||||||||  |||||||||||||||||    
T  8239052 aacacgacacatataattacactgaattataagattttcttaaattatta 8239101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 407 - 452
Target Start/End: Original strand, 21140988 - 21141033
Alignment:
Q  407 cgacacctatgattacactgaattatatcattttcttaaattatta 452  Q
    |||||||||| || |||||||||||||| |||||||||||||||||    
T  21140988 cgacacctataatcacactgaattatatgattttcttaaattatta 21141033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 396 - 456
Target Start/End: Original strand, 10230068 - 10230128
Alignment:
Q  396 cgacactaacacgacacctatgattacactgaattatatcattttcttaaattattatctg 456  Q
    |||||| ||||||||| ||||  |||||||||||||| |||||| || |||||||||||||    
T  10230068 cgacaccaacacgacatctatacttacactgaattatgtcatttcctcaaattattatctg 10230128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 407 - 454
Target Start/End: Original strand, 38134412 - 38134459
Alignment:
Q  407 cgacacctatgattacactgaattatatcattttcttaaattattatc 454  Q
    |||||| |||||||||| |||||||| ||||||||| |||||||||||    
T  38134412 cgacacatatgattacattgaattatgtcattttctcaaattattatc 38134459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 407 - 453
Target Start/End: Original strand, 23128667 - 23128713
Alignment:
Q  407 cgacacctatgattacactgaattatatcattttcttaaattattat 453  Q
    |||||| |||||||||||||||||||||  |||||| ||||||||||    
T  23128667 cgacacatatgattacactgaattatatggttttctcaaattattat 23128713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 404 - 454
Target Start/End: Complemental strand, 43250049 - 43249999
Alignment:
Q  404 acacgacacctatgattacactgaattatatcattttcttaaattattatc 454  Q
    ||||||||| ||| ||||||||| ||||| ||||||||| |||||||||||    
T  43250049 acacgacacttataattacactgtattatgtcattttctcaaattattatc 43249999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 409 - 454
Target Start/End: Complemental strand, 23151615 - 23151571
Alignment:
Q  409 acacctatgattacactgaattatatcattttcttaaattattatc 454  Q
    ||||||||| ||||||||||||||||| |||| |||||||||||||    
T  23151615 acacctatgtttacactgaattatatc-tttttttaaattattatc 23151571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 407 - 452
Target Start/End: Original strand, 27732245 - 27732290
Alignment:
Q  407 cgacacctatgattacactgaattatatcattttcttaaattatta 452  Q
    |||||| ||| ||||||||||||||| | |||||||||||||||||    
T  27732245 cgacacatataattacactgaattatgtaattttcttaaattatta 27732290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 409 - 454
Target Start/End: Complemental strand, 32855405 - 32855360
Alignment:
Q  409 acacctatgattacactgaattatatcattttcttaaattattatc 454  Q
    |||| |||||||||| | ||||| ||||||||||||||||||||||    
T  32855405 acacatatgattacattcaattaaatcattttcttaaattattatc 32855360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 383 - 454
Target Start/End: Complemental strand, 34446642 - 34446571
Alignment:
Q  383 acgcgttgatgttcgacactaacacgacacctatgattacactgaattatatcattttcttaaattattatc 454  Q
    |||||| | |||| |||||  ||||||||||||||||||||||||||||| ||||||||| |||||||||||    
T  34446642 acgcgtcggtgttggacaccgacacgacacctatgattacactgaattatgtcattttctcaaattattatc 34446571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 404 - 454
Target Start/End: Complemental strand, 6389799 - 6389749
Alignment:
Q  404 acacgacacctatgattacactgaattatatcattttcttaaattattatc 454  Q
    |||||||||||||||||||||| |||||||||||||||| |||||||||||    
T  6389799 acacgacacctatgattacactaaattatatcattttctcaaattattatc 6389749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 411 - 454
Target Start/End: Original strand, 19602191 - 19602234
Alignment:
Q  411 acctatgattacactgaattatatcattttcttaaattattatc 454  Q
    |||||||||||||||||||||||||||||||| |||||||||||    
T  19602191 acctatgattacactgaattatatcattttctcaaattattatc 19602234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 404 - 454
Target Start/End: Original strand, 12235522 - 12235572
Alignment:
Q  404 acacgacacctatgattacactgaattatatcattttcttaaattattatc 454  Q
    ||||||||||||||||||||||||||||| |||||||||  ||||||||||    
T  12235522 acacgacacctatgattacactgaattatgtcattttctctaattattatc 12235572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 404 - 454
Target Start/End: Original strand, 17168466 - 17168516
Alignment:
Q  404 acacgacacctatgattacactgaattatatcattttcttaaattattatc 454  Q
    ||||||||||||| |||||||| |||||||||||||||| |||||||||||    
T  17168466 acacgacacctattattacactaaattatatcattttctcaaattattatc 17168516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 398 - 451
Target Start/End: Original strand, 2153884 - 2153937
Alignment:
Q  398 acactaacacgacacctatgattacactgaattatatcattttcttaaattatt 451  Q
    |||| ||| |||||||||| |||||||| |||||||||||||||||||||||||    
T  2153884 acaccaacgcgacacctataattacactaaattatatcattttcttaaattatt 2153937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 405 - 454
Target Start/End: Complemental strand, 6299567 - 6299518
Alignment:
Q  405 cacgacacctatgattacactgaattatatcattttcttaaattattatc 454  Q
    |||||||||||| |||||| |||||||||||||||||| |||||||||||    
T  6299567 cacgacacctatcattacattgaattatatcattttctcaaattattatc 6299518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 405 - 454
Target Start/End: Complemental strand, 6306377 - 6306328
Alignment:
Q  405 cacgacacctatgattacactgaattatatcattttcttaaattattatc 454  Q
    |||||||||||| |||||| |||||||||||||||||| |||||||||||    
T  6306377 cacgacacctatcattacattgaattatatcattttctcaaattattatc 6306328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 404 - 454
Target Start/End: Original strand, 12086348 - 12086398
Alignment:
Q  404 acacgacacctatgattacactgaattatatcattttcttaaattattatc 454  Q
    |||||||||||||||||| |||||||||| ||||| ||| |||||||||||    
T  12086348 acacgacacctatgattaaactgaattatgtcattatctcaaattattatc 12086398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 380 - 454
Target Start/End: Complemental strand, 26247506 - 26247432
Alignment:
Q  380 gacacgcgttgatgttcgacactaacacgacacctatgattacactgaattatatcattttcttaaattattatc 454  Q
    |||||| |||| ||| ||||||  |||||| ||||||||||| ||| || ||| |||||||||||||||||||||    
T  26247506 gacacgtgttggtgtccgacaccgacacgaaacctatgattatactaaaatatgtcattttcttaaattattatc 26247432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 408 - 453
Target Start/End: Original strand, 34895041 - 34895086
Alignment:
Q  408 gacacctatgattacactgaattatatcattttcttaaattattat 453  Q
    ||||||||||||||||||||||| ||| ||||||| ||||||||||    
T  34895041 gacacctatgattacactgaattgtataattttctcaaattattat 34895086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 409 - 457
Target Start/End: Original strand, 7569176 - 7569224
Alignment:
Q  409 acacctatgattacactgaattatatcattttcttaaattattatctgt 457  Q
    |||||||| ||||||||||||||| | ||||||| ||||||||||||||    
T  7569176 acacctataattacactgaattatgtaattttctcaaattattatctgt 7569224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 413 - 452
Target Start/End: Original strand, 8389484 - 8389523
Alignment:
Q  413 ctatgattacactgaattatatcattttcttaaattatta 452  Q
    |||| ||||||||||||||||| |||||||||||||||||    
T  8389484 ctataattacactgaattatatgattttcttaaattatta 8389523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 407 - 450
Target Start/End: Original strand, 13364711 - 13364754
Alignment:
Q  407 cgacacctatgattacactgaattatatcattttcttaaattat 450  Q
    |||||| ||||||||||||||||||||| ||||||| |||||||    
T  13364711 cgacacatatgattacactgaattatatgattttctcaaattat 13364754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 408 - 451
Target Start/End: Original strand, 22965914 - 22965957
Alignment:
Q  408 gacacctatgattacactgaattatatcattttcttaaattatt 451  Q
    ||||||||||||||| ||||||||||||||||| | ||||||||    
T  22965914 gacacctatgattacgctgaattatatcattttttaaaattatt 22965957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 408 - 451
Target Start/End: Complemental strand, 23822479 - 23822436
Alignment:
Q  408 gacacctatgattacactgaattatatcattttcttaaattatt 451  Q
    ||||||||||||||| ||||||||||||||||| | ||||||||    
T  23822479 gacacctatgattacgctgaattatatcattttttaaaattatt 23822436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 409 - 447
Target Start/End: Original strand, 4420187 - 4420225
Alignment:
Q  409 acacctatgattacactgaattatatcattttcttaaat 447  Q
    ||||||||| |||||||||||||||||||||||| ||||    
T  4420187 acacctatggttacactgaattatatcattttctcaaat 4420225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 404 - 453
Target Start/End: Complemental strand, 39820485 - 39820436
Alignment:
Q  404 acacgacacctatgattacactgaattatatcattttcttaaattattat 453  Q
    |||||||||||||||||||||| |||||||||||||||| ||||||||||    
T  39820485 acacgacacctatgattacactaaattatatcattttctcaaattattat 39820436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 404 - 463
Target Start/End: Complemental strand, 13845290 - 13845231
Alignment:
Q  404 acacgacacctatgattacactgaattatatcattttcttaaattattatctgtttcggt 463  Q
    ||||||||||||||||||| || |||||||||||||||| |||||||||| ||| |||||    
T  13845290 acacgacacctatgattactctaaattatatcattttctcaaattattatttgtgtcggt 13845231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 404 - 463
Target Start/End: Original strand, 35431143 - 35431202
Alignment:
Q  404 acacgacacctatgattacactgaattatatcattttcttaaattattatctgtttcggt 463  Q
    |||||||||||||||||||||| || ||| ||||||||| ||||||||||| ||||||||    
T  35431143 acacgacacctatgattacactaaaatatgtcattttctcaaattattatccgtttcggt 35431202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 403 - 454
Target Start/End: Complemental strand, 3658204 - 3658153
Alignment:
Q  403 aacacgacacctatgattacactgaattatatcattttcttaaattattatc 454  Q
    |||||||||||||||||||||||||| || || ||||||| |||||||||||    
T  3658204 aacacgacacctatgattacactgaactacattattttctcaaattattatc 3658153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 403 - 454
Target Start/End: Complemental strand, 9936871 - 9936820
Alignment:
Q  403 aacacgacacctatgattacactgaattatatcattttcttaaattattatc 454  Q
    ||||| |||| |||||||| | ||||||||||||||||||||||||||||||    
T  9936871 aacacaacacatatgattatattgaattatatcattttcttaaattattatc 9936820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 396 - 451
Target Start/End: Original strand, 16869710 - 16869765
Alignment:
Q  396 cgacactaacacgacacctatgattacactgaattatatcattttcttaaattatt 451  Q
    |||||| ||||||||||| ||||||| | |||||||| ||||||||||||||||||    
T  16869710 cgacaccaacacgacaccaatgattatagtgaattatgtcattttcttaaattatt 16869765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 414 - 452
Target Start/End: Original strand, 12559119 - 12559157
Alignment:
Q  414 tatgattacactgaattatatcattttcttaaattatta 452  Q
    ||||||||||||||||||||||||||||| |||||||||    
T  12559119 tatgattacactgaattatatcattttctcaaattatta 12559157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 408 - 453
Target Start/End: Original strand, 28883885 - 28883930
Alignment:
Q  408 gacacctatgattacactgaattatatcattttcttaaattattat 453  Q
    ||||||||||||| ||||||||||| ||||||||| ||||||||||    
T  28883885 gacacctatgattccactgaattatgtcattttctcaaattattat 28883930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 404 - 453
Target Start/End: Complemental strand, 40064007 - 40063958
Alignment:
Q  404 acacgacacctatgattacactgaattatatcattttcttaaattattat 453  Q
    ||||||| |||||||||||| |||||||| ||||||||| ||||||||||    
T  40064007 acacgacgcctatgattacaatgaattatgtcattttctcaaattattat 40063958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 404 - 463
Target Start/End: Original strand, 13009496 - 13009555
Alignment:
Q  404 acacgacacctatgattacactgaattatatcattttcttaaattattatctgtttcggt 463  Q
    ||||||||| |||||||||||| ||||||||  |||||| ||||||||||| || |||||    
T  13009496 acacgacacttatgattacactaaattatattgttttctcaaattattatccgtgtcggt 13009555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 407 - 454
Target Start/End: Original strand, 33382025 - 33382072
Alignment:
Q  407 cgacacctatgattacactgaattatatcattttcttaaattattatc 454  Q
    |||||| ||| ||||| ||||||||| |||||||||||||||||||||    
T  33382025 cgacacatataattactctgaattatgtcattttcttaaattattatc 33382072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 404 - 454
Target Start/End: Complemental strand, 1676768 - 1676718
Alignment:
Q  404 acacgacacctatgattacactgaattatatcattttcttaaattattatc 454  Q
    |||||||||||||||||||||| || ||| ||||||||  |||||||||||    
T  1676768 acacgacacctatgattacactaaaatatgtcattttcacaaattattatc 1676718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 404 - 457
Target Start/End: Complemental strand, 14679388 - 14679337
Alignment:
Q  404 acacgacacctatgattacactgaattatatcattttcttaaattattatctgt 457  Q
    ||||||||| ||||||  |||||| |||||| ||||||||||||||||||||||    
T  14679388 acacgacacttatgat--cactgagttatattattttcttaaattattatctgt 14679337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 404 - 454
Target Start/End: Complemental strand, 44067572 - 44067522
Alignment:
Q  404 acacgacacctatgattacactgaattatatcattttcttaaattattatc 454  Q
    ||||||||| ||| ||||||||| ||||| ||||||||| |||||||||||    
T  44067572 acacgacacttataattacactgtattatgtcattttctcaaattattatc 44067522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 396 - 453
Target Start/End: Complemental strand, 3911174 - 3911117
Alignment:
Q  396 cgacactaacacgacacctatgattacactgaattatatcattttcttaaattattat 453  Q
    |||||| |||||||||| ||||||| ||||||||||| | ||||| |||||| |||||    
T  3911174 cgacaccaacacgacacttatgatttcactgaattatgtgattttattaaatgattat 3911117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 407 - 452
Target Start/End: Original strand, 4786344 - 4786389
Alignment:
Q  407 cgacacctatgattacactgaattatatcattttcttaaattatta 452  Q
    |||||| ||| ||||||||||||||| | |||||||||||||||||    
T  4786344 cgacacatataattacactgaattatgtgattttcttaaattatta 4786389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 398 - 455
Target Start/End: Complemental strand, 8017548 - 8017491
Alignment:
Q  398 acactaacacgacacctatgattacactgaattatatcattttcttaaattattatct 455  Q
    ||||| |||||||| ||||||||||||| |||||| ||||||| | | ||||||||||    
T  8017548 acactgacacgacatctatgattacactcaattatgtcattttttcatattattatct 8017491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 413 - 450
Target Start/End: Complemental strand, 26507487 - 26507450
Alignment:
Q  413 ctatgattacactgaattatatcattttcttaaattat 450  Q
    ||||||||||||| |||||||| |||||||||||||||    
T  26507487 ctatgattacacttaattatattattttcttaaattat 26507450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 407 - 452
Target Start/End: Original strand, 31580133 - 31580178
Alignment:
Q  407 cgacacctatgattacactgaattatatcattttcttaaattatta 452  Q
    |||||||||| |||||||| |||||| | |||||||||||||||||    
T  31580133 cgacacctataattacactcaattatgtgattttcttaaattatta 31580178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000005; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 377 - 454
Target Start/End: Original strand, 42004923 - 42005000
Alignment:
Q  377 tcggacacgcgttgatgttcgacactaacacgacacctatgattacactgaattatatcattttcttaaattattatc 454  Q
    ||||||| |||| | ||| ||||||  |||| ||||||||||||||||| |||||| ||||||||| |||||||||||    
T  42004923 tcggacatgcgtcggtgtccgacaccgacacaacacctatgattacactaaattatgtcattttctcaaattattatc 42005000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 396 - 463
Target Start/End: Original strand, 40747768 - 40747835
Alignment:
Q  396 cgacactaacacgacacctatgattacactgaattatatcattttcttaaattattatctgtttcggt 463  Q
    |||||| |||| ||||||||| |||||| |||||||| ||||||||| ||||||||||| || |||||    
T  40747768 cgacaccaacatgacacctataattacattgaattatgtcattttctcaaattattatccgtgtcggt 40747835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 404 - 454
Target Start/End: Original strand, 6936403 - 6936453
Alignment:
Q  404 acacgacacctatgattacactgaattatatcattttcttaaattattatc 454  Q
    |||||||||||||||||||||| |||||| ||||||||| | |||||||||    
T  6936403 acacgacacctatgattacacttaattatgtcattttctcagattattatc 6936453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 407 - 452
Target Start/End: Original strand, 12040688 - 12040734
Alignment:
Q  407 cgacacctatgattacactgaa-ttatatcattttcttaaattatta 452  Q
    ||||||||||||||| |||||| ||||||||||||||||||||||||    
T  12040688 cgacacctatgattatactgaaattatatcattttcttaaattatta 12040734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 42
Target Start/End: Complemental strand, 20141545 - 20141512
Alignment:
Q  9 caaattccatagccataataagtcccgtaatttc 42  Q
    ||||||||||||||||||||||||||||||||||    
T  20141545 caaattccatagccataataagtcccgtaatttc 20141512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 402 - 454
Target Start/End: Original strand, 48415726 - 48415779
Alignment:
Q  402 taacacgacacctatgattacactgaattatatcattttctt-aaattattatc 454  Q
    |||||||||| ||||||||||||| |||||||||||||| || |||||||||||    
T  48415726 taacacgacatctatgattacactaaattatatcatttttttaaaattattatc 48415779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 404 - 463
Target Start/End: Complemental strand, 6574045 - 6573986
Alignment:
Q  404 acacgacacctatgattacactgaattatatcattttcttaaattattatctgtttcggt 463  Q
    |||| ||||||||||||||||| |||||||||||| ||| ||||||| ||| || |||||    
T  6574045 acacaacacctatgattacactaaattatatcattgtctcaaattatcatccgtgtcggt 6573986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 407 - 454
Target Start/End: Complemental strand, 19637821 - 19637774
Alignment:
Q  407 cgacacctatgattacactgaattatatcattttcttaaattattatc 454  Q
    |||||| |||||||||| ||||| || |||||||||||||||||||||    
T  19637821 cgacacatatgattacattgaataatgtcattttcttaaattattatc 19637774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 404 - 454
Target Start/End: Complemental strand, 21145523 - 21145472
Alignment:
Q  404 acacgacacctatgattacactgaattatatcattttctt-aaattattatc 454  Q
    ||||||| ||||||||||||||||||||| ||||||| || |||||||||||    
T  21145523 acacgacgcctatgattacactgaattatgtcatttttttcaaattattatc 21145472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 396 - 454
Target Start/End: Original strand, 11634119 - 11634177
Alignment:
Q  396 cgacactaacacgacacctatgattacactgaattatatcattttcttaaattattatc 454  Q
    ||||||| |||||||||||||||||||| | |||||| |  |||||| |||||||||||    
T  11634119 cgacactcacacgacacctatgattacattaaattatgttgttttctcaaattattatc 11634177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 414 - 452
Target Start/End: Complemental strand, 21038129 - 21038091
Alignment:
Q  414 tatgattacactgaattatatcattttcttaaattatta 452  Q
    ||||||||||||||||||| | |||||||||||||||||    
T  21038129 tatgattacactgaattatgtaattttcttaaattatta 21038091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 404 - 454
Target Start/End: Original strand, 22794081 - 22794131
Alignment:
Q  404 acacgacacctatgattacactgaattatatcattttcttaaattattatc 454  Q
    ||||||||||||| ||||||||| ||||| ||||||| | |||||||||||    
T  22794081 acacgacacctataattacactgtattatgtcattttttcaaattattatc 22794131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 409 - 454
Target Start/End: Original strand, 7988459 - 7988504
Alignment:
Q  409 acacctatgattacactgaattatatcattttcttaaattattatc 454  Q
    |||| |||||||||| |||||||| ||| |||||||||||||||||    
T  7988459 acacttatgattacattgaattatgtcactttcttaaattattatc 7988504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 407 - 452
Target Start/End: Complemental strand, 36878514 - 36878469
Alignment:
Q  407 cgacacctatgattacactgaattatatcattttcttaaattatta 452  Q
    |||||||||| ||||||||||||||| | ||||||| |||||||||    
T  36878514 cgacacctataattacactgaattatgtgattttctcaaattatta 36878469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 406 - 463
Target Start/End: Original strand, 39101187 - 39101244
Alignment:
Q  406 acgacacctatgattacactgaattatatcattttcttaaattattatctgtttcggt 463  Q
    ||||||||||| |||||||| |||||| | ||||||| |||||||||| ||| |||||    
T  39101187 acgacacctataattacacttaattatgttattttctcaaattattatatgtgtcggt 39101244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 407 - 452
Target Start/End: Complemental strand, 52903302 - 52903257
Alignment:
Q  407 cgacacctatgattacactgaattatatcattttcttaaattatta 452  Q
    |||||| ||| ||||||||||||||||| ||||| |||||||||||    
T  52903302 cgacacatataattacactgaattatatgattttattaaattatta 52903257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 36; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 408 - 455
Target Start/End: Complemental strand, 56974 - 56927
Alignment:
Q  408 gacacctatgattacactgaattatatcattttcttaaattattatct 455  Q
    ||||| ||||||||||||||||||||||||||||| ||||||| ||||    
T  56974 gacacttatgattacactgaattatatcattttctcaaattataatct 56927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0598 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0598
Description:

Target: scaffold0598; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 404 - 454
Target Start/End: Original strand, 8056 - 8106
Alignment:
Q  404 acacgacacctatgattacactgaattatatcattttcttaaattattatc 454  Q
    |||||| ||||||| |||||||||||||| ||||||||| |||||||||||    
T  8056 acacgatacctatgtttacactgaattatgtcattttctcaaattattatc 8106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0295 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0295
Description:

Target: scaffold0295; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 42
Target Start/End: Original strand, 18512 - 18546
Alignment:
Q  8 acaaattccatagccataataagtcccgtaatttc 42  Q
    |||||||||||||||||||||||||||||||||||    
T  18512 acaaattccatagccataataagtcccgtaatttc 18546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 396 - 462
Target Start/End: Original strand, 225263 - 225329
Alignment:
Q  396 cgacactaacacgacacctatgattacactgaattatatcattttcttaaattattatctgtttcgg 462  Q
    |||||| |||||||||| ||| |||||| || ||||| ||||||||| |||||||||||||| ||||    
T  225263 cgacaccaacacgacacttataattacattgtattatgtcattttctcaaattattatctgtgtcgg 225329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0199 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 404 - 454
Target Start/End: Complemental strand, 2005 - 1955
Alignment:
Q  404 acacgacacctatgattacactgaattatatcattttcttaaattattatc 454  Q
    |||||||||||||||||||||| || ||| ||||||||  |||||||||||    
T  2005 acacgacacctatgattacactaaaatatgtcattttcacaaattattatc 1955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University