View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5876-Insertion-21 (Length: 77)

Name: NF5876-Insertion-21
Description: NF5876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5876-Insertion-21
NF5876-Insertion-21
[»] chr1 (8 HSPs)
chr1 (8-77)||(9099662-9099731)
chr1 (8-74)||(8972327-8972393)
chr1 (8-77)||(9136342-9136411)
chr1 (22-77)||(9072135-9072190)
chr1 (16-70)||(9065614-9065668)
chr1 (22-77)||(8863980-8864035)
chr1 (22-65)||(9007381-9007424)
chr1 (22-77)||(8868216-8868271)


Alignment Details
Target: chr1 (Bit Score: 62; Significance: 2e-27; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 2e-27
Query Start/End: Original strand, 8 - 77
Target Start/End: Complemental strand, 9099731 - 9099662
Alignment:
Q  8 attttgcagagtataaatataaagttgtcacattattttcacaagctagttcgtacctgctgtctccgca 77  Q
    ||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||    
T  9099731 attttgcagagtataaatataattttgtcacattattttcacaagctagttcgtacctgctgtctccgca 9099662  T

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Target: chr1; HSP #2
Raw Score: 55; E-Value: 3e-23
Query Start/End: Original strand, 8 - 74
Target Start/End: Original strand, 8972327 - 8972393
Alignment:
Q  8 attttgcagagtataaatataaagttgtcacattattttcacaagctagttcgtacctgctgtctcc 74  Q
    |||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||    
T  8972327 attttgcagaatataaatataaagttgtgacattattttcacaagctagttcatacctgctgtctcc 8972393  T

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Target: chr1; HSP #3
Raw Score: 46; E-Value: 6e-18
Query Start/End: Original strand, 8 - 77
Target Start/End: Complemental strand, 9136411 - 9136342
Alignment:
Q  8 attttgcagagtataaatataaagttgtcacattattttcacaagctagttcgtacctgctgtctccgca 77  Q
    ||||||||||||||||||||||| |||| | ||||||||||||||||||||| || |||||||| |||||    
T  9136411 attttgcagagtataaatataaacttgttatattattttcacaagctagttcataactgctgtcaccgca 9136342  T

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Target: chr1; HSP #4
Raw Score: 44; E-Value: 1e-16
Query Start/End: Original strand, 22 - 77
Target Start/End: Complemental strand, 9072190 - 9072135
Alignment:
Q  22 aaatataaagttgtcacattattttcacaagctagttcgtacctgctgtctccgca 77  Q
    ||||||||||||| ||||||||||||||||| ||||||||||||||| ||||||||    
T  9072190 aaatataaagttgccacattattttcacaagatagttcgtacctgctttctccgca 9072135  T

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Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.00000000000009
Query Start/End: Original strand, 16 - 70
Target Start/End: Original strand, 9065614 - 9065668
Alignment:
Q  16 gagtataaatataaagttgtcacattattttcacaagctagttcgtacctgctgt 70  Q
    ||||| ||||||||||||||||||||||||||||||| |||||| ||| ||||||    
T  9065614 gagtacaaatataaagttgtcacattattttcacaagatagttcatacttgctgt 9065668  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 77
Target Start/End: Complemental strand, 8864035 - 8863980
Alignment:
Q  22 aaatataaagttgtcacattattttcacaagctagttcgtacctgctgtctccgca 77  Q
    |||||||||||||| ||||||||| |||||| ||| || ||||||||||| |||||    
T  8864035 aaatataaagttgtaacattatttgcacaagatagctcatacctgctgtccccgca 8863980  T

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Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 65
Target Start/End: Original strand, 9007381 - 9007424
Alignment:
Q  22 aaatataaagttgtcacattattttcacaagctagttcgtacct 65  Q
    |||| |||||||||||||||||||||||| |||| |||||||||    
T  9007381 aaatttaaagttgtcacattattttcacatgctaattcgtacct 9007424  T

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Target: chr1; HSP #8
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 77
Target Start/End: Complemental strand, 8868271 - 8868216
Alignment:
Q  22 aaatataaagttgtcacattattttcacaagctagttcgtacctgctgtctccgca 77  Q
    |||| ||| |||||||| ||||||||||||| |||||| |||||||| || |||||    
T  8868271 aaatttaaggttgtcacgttattttcacaagatagttcatacctgctatccccgca 8868216  T

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