View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5876-Insertion-3 (Length: 814)
Name: NF5876-Insertion-3
Description: NF5876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5876-Insertion-3 |
 | |
|
| [»] scaffold0257 (1 HSPs) |
| | |
|
| [»] scaffold0922 (1 HSPs) |
| | |
|
| [»] scaffold1147 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 256; Significance: 1e-142; HSPs: 36)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 345 - 751
Target Start/End: Original strand, 8538390 - 8538787
Alignment:
| Q |
345 |
tgcttaatatcttccacatgttgatttgaaatgttaatatttaaacgcatctcgtcaacttccttggttacacgctgctgggaatccaatagcttttgca |
444 |
Q |
| |
|
||||||| ||||||||||||||||||| |||||||||| | |||||||||||| ||| ||||||| ||| |||||||||||||||| |||||||| |
|
|
| T |
8538390 |
tgcttaagatcttccacatgttgatttaaaatgttaatctgtaaacgcatctcttcagcttcctttgttt-----tgctgggaatccaatatcttttgca |
8538484 |
T |
|
| Q |
445 |
atgcattttgagagaattgtaaatcaggaaacaaagcgcgcttttcaacacggtccaaccaatccttatcaaaaccacatttgcacacatctt-taataa |
543 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | |||||||| |||||| |
|
|
| T |
8538485 |
atgcattttgagagaattgtaaatcaggaaacaaagcgcgcttttcaacacgatccaaccaatccttatcaaaaccacattttcgcacatcttgtaataa |
8538584 |
T |
|
| Q |
544 |
ctcaacacattcagattggcttgaacctaacacatcgaacgcactatgggtttggaggaatttcaatagctcagctagacagttgtaggcataacctttg |
643 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||| ||| || |||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
8538585 |
ctcaacaaattcagattggcttgaacctaacacatccaacacaatatgagtttggaggaatttcaatagctcagctagacagttgtaggcataacccttg |
8538684 |
T |
|
| Q |
644 |
tatctattgcttagtgaagcgtccgttaaaagaattgaaggatgcttaacaaggaaatcagtcaagtcaacaaagacaagttatcagtagccaaatgatt |
743 |
Q |
| |
|
||||| || ||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| |||| ||||||| ||||||||||||| |
|
|
| T |
8538685 |
tatctgttacttagtgaagcgtccgttaaaagaattgaaggatggttaacaaggaaat-----tggtcaacaaggacatgttatcaatagccaaatgatt |
8538779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 342 - 751
Target Start/End: Complemental strand, 27921068 - 27920663
Alignment:
| Q |
342 |
tgatgcttaatatcttccacatgttgatttgaaatgttaatatttaaacgcatctcgtcaacttccttggttacacgctgctgggaatccaatagctttt |
441 |
Q |
| |
|
|||||||||| ||||||||||||||||||| ||||||| || || ||||| || || |||||||||||||| ||| |||| | ||||| | || |||||| |
|
|
| T |
27921068 |
tgatgcttaagatcttccacatgttgatttaaaatgtttatcttcaaacgaatatcttcaacttccttggtgacatgctgtttggaatacgatggctttt |
27920969 |
T |
|
| Q |
442 |
gcaatgcattttgagagaattgtaaatcaggaaacaaagcgcgcttttcaacacggtccaaccaatccttatcaaaaccacatttgcacacatctt-taa |
540 |
Q |
| |
|
|||||||||||| |||||||||||| ||| || ||||||||||||||||||||| ||||||||||| ||||||||||||||| ||| |||||||| ||| |
|
|
| T |
27920968 |
gcaatgcattttcagagaattgtaattcatgagacaaagcgcgcttttcaacaccatccaaccaatctttatcaaaaccacatctgcgcacatcttgtaa |
27920869 |
T |
|
| Q |
541 |
taactcaacacattcagattggcttgaacctaacacatcgaacgcactatgggtttggaggaatttcaatagctcagctagacagttgtaggcataacct |
640 |
Q |
| |
|
||| |||||| ||||||| |||||||||||||||||||| ||||||||||| |||||||||||| ||||||||||||||| |||||||||| |||||| |
|
|
| T |
27920868 |
taaatcaacaaattcagagtggcttgaacctaacacatccaacgcactatgagtttggaggaatcgcaatagctcagctaggcagttgtaggaataaccc |
27920769 |
T |
|
| Q |
641 |
ttgtatctattgcttagtgaagcgtccgttaaaagaattgaaggatgcttaacaaggaaatcagtcaagtcaacaaagacaagttatcagtagccaaatg |
740 |
Q |
| |
|
|||||||| | || ||||||| |||| ||| ||||| ||||||||||||||||||||| || |||||||||||||||||| ||| |||||||||| |
|
|
| T |
27920768 |
ttgtatctgctactcagtgaagtgtcccttagaagaactgaaggatgcttaacaaggaagtc-----agtcaacaaagacaagttctcaatagccaaatg |
27920674 |
T |
|
| Q |
741 |
attcttggaga |
751 |
Q |
| |
|
|||||||||| |
|
|
| T |
27920673 |
cttcttggaga |
27920663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 195; E-Value: 1e-105
Query Start/End: Original strand, 342 - 708
Target Start/End: Complemental strand, 30994195 - 30993832
Alignment:
| Q |
342 |
tgatgcttaatatcttccacatgttgatttgaaatgttaatatttaaacgcatctcgtcaacttccttggttacacgctgctgggaatccaatagctttt |
441 |
Q |
| |
|
|||||||||| ||||||| |||||||||| |||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||| ||| ||||||| |
|
|
| T |
30994195 |
tgatgcttaagatcttcctcatgttgattaaaaatgttaatctttaaacgcatctcttcaacttccttggttacacgctgttgggaattcaacagctttt |
30994096 |
T |
|
| Q |
442 |
gcaatgcattttgagagaattgtaaatcaggaaacaaagcgcgcttttcaacacggtccaaccaatccttatcaaaaccacatttgcacacatctt-taa |
540 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||| |||||||| |||| |||||||||| ||| ||||||||||| ||||| |||| ||| |
|
|
| T |
30994095 |
gcaatgcattttgagagaattgtaaatcaggaaataaagcacgcttttcgacactgtccaaccaa----tattgaaaccacatttccacacttcttctaa |
30994000 |
T |
|
| Q |
541 |
taactcaacacattcagattggcttgaacctaacacatcgaacgcactatgggtttggaggaatttcaatagctcagctagacagttgtaggcataacct |
640 |
Q |
| |
|
|||||||||| ||||||| |||||||||||||||||||| ||| ||| ||| |||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
30993999 |
taactcaacaaattcagagtggcttgaacctaacacatccaacacacaatgcgtttggaggaatttcaatagatcagctagacagttgtaggcataaccc |
30993900 |
T |
|
| Q |
641 |
ttgtatctattgcttagtgaagcgtccgttaaaagaattgaaggatgcttaacaaggaaatcagtcaa |
708 |
Q |
| |
|
|| ||||| || || ||||| || | ||| ||||||||||||||| |||||||||||||| ||||| |
|
|
| T |
30993899 |
ttatatctgttactcggtgaactgttccttagaagaattgaaggatgattaacaaggaaatccgtcaa |
30993832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 342 - 751
Target Start/End: Complemental strand, 28038373 - 28037968
Alignment:
| Q |
342 |
tgatgcttaatatcttccacatgttgatttgaaatgttaatatttaaacgcatctcgtcaacttccttggttacacgctgctgggaatccaatagctttt |
441 |
Q |
| |
|
|||||| ||| |||||||| ||||||||| |||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28038373 |
tgatgcataagatcttccagatgttgattaaaaatgttaatttttaaacgcatctcttcaacttccttggttacacgctgctgggaatccaatagctttt |
28038274 |
T |
|
| Q |
442 |
gcaatgcattttgagagaattgtaaatcaggaaacaaagcgcgcttttcaacacggtccaaccaatccttatcaaaaccacatttgcacacatctt-taa |
540 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||| |||||||| |||| || |||||||| ||||| |||| |||| ||| |||||||| ||| |
|
|
| T |
28038273 |
gcaatgcattttgagagaattttaaatcaggaaacaaagcacgcttttcgacaccatcaaaccaatctttatcgaaactacatctgcgcacatcttgtaa |
28038174 |
T |
|
| Q |
541 |
taactcaacacattcagattggcttgaacctaacacatcgaacgcactatgggtttggaggaatttcaatagctcagctagacagttgtaggcataacct |
640 |
Q |
| |
|
||||||||| |||||| |||||||||||||||||||| ||| ||||||| |||||||||||||||||||| || |||| |||||||| ||||||| |
|
|
| T |
28038173 |
caactcaacaaattcagtgtggcttgaacctaacacatccaacacactatgcgtttggaggaatttcaatagatcgactaggcagttgtaagcataactc |
28038074 |
T |
|
| Q |
641 |
ttgtatctattgcttagtgaagcgtccgttaaaagaattgaaggatgcttaacaaggaaatcagtcaagtcaacaaagacaagttatcagtagccaaatg |
740 |
Q |
| |
|
|||||||| || || | | ||| |||| ||||| || |||||||||||||||| |||||| ||||||||||||||| |||||| |||||||||| |
|
|
| T |
28038073 |
ttgtatcttttactcaattaagtgtcctttaaacgaccagaaggatgcttaacaaagaaatc-----agtcaacaaagacaaattatcaatagccaaatg |
28037979 |
T |
|
| Q |
741 |
attcttggaga |
751 |
Q |
| |
|
||||| |||| |
|
|
| T |
28037978 |
cttcttagaga |
28037968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 342 - 751
Target Start/End: Complemental strand, 27955037 - 27954632
Alignment:
| Q |
342 |
tgatgcttaatatcttccacatgttgatttgaaatgttaatatttaaacgcatctcgtcaacttccttggttacacgctgctgggaatccaatagctttt |
441 |
Q |
| |
|
|||||||||| |||||||| ||||||||| ||||||| || |||||||||||||| |||||||| ||||| ||| |||||| |||| |||| || |||| |
|
|
| T |
27955037 |
tgatgcttaagatcttccagatgttgattaaaaatgtttatctttaaacgcatctcttcaacttctttggtgacatgctgctcggaaaccaacagttttt |
27954938 |
T |
|
| Q |
442 |
gcaatgcattttgagagaattgtaaatcaggaaacaaagcgcgcttttcaacacggtccaaccaatccttatcaaaaccacatttgcacacatctt-taa |
540 |
Q |
| |
|
||||||||||||||||||||||||| ||| | |||||||| |||||||||||| ||||||||||| ||||||||||||||| ||| |||||||| ||| |
|
|
| T |
27954937 |
gcaatgcattttgagagaattgtaattcataagacaaagcgtgcttttcaacaccatccaaccaatctttatcaaaaccacatctgcgcacatcttgtaa |
27954838 |
T |
|
| Q |
541 |
taactcaacacattcagattggcttgaacctaacacatcgaacgcactatgggtttggaggaatttcaatagctcagctagacagttgtaggcataacct |
640 |
Q |
| |
|
||| |||||| ||||||| |||||||||||||||||||| ||||||||||| |||||||||||| ||||||||||||||| |||||||||| |||||| |
|
|
| T |
27954837 |
taaatcaacaaattcagagtggcttgaacctaacacatccaacgcactatgagtttggaggaatcgcaatagctcagctaggcagttgtaggaataaccc |
27954738 |
T |
|
| Q |
641 |
ttgtatctattgcttagtgaagcgtccgttaaaagaattgaaggatgcttaacaaggaaatcagtcaagtcaacaaagacaagttatcagtagccaaatg |
740 |
Q |
| |
|
|||||||| | || ||||| |||| || ||||| ||||||||||||||| |||||||| |||||||||||||||||| ||| |||||||||| |
|
|
| T |
27954737 |
ttgtatctgctactccatgaagtgtcccttgtaagaaatgaaggatgcttaactaggaaatc-----agtcaacaaagacaagttctcaatagccaaatg |
27954643 |
T |
|
| Q |
741 |
attcttggaga |
751 |
Q |
| |
|
|| ||||||| |
|
|
| T |
27954642 |
cttattggaga |
27954632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 342 - 751
Target Start/End: Complemental strand, 28152513 - 28152108
Alignment:
| Q |
342 |
tgatgcttaatatcttccacatgttgatttgaaatgttaatatttaaacgcatctcgtcaacttccttggttacacgctgctgggaatccaatagctttt |
441 |
Q |
| |
|
|||||||||| |||||| | ||||||||| ||||||| || |||||||||||||| |||||||| || || |||||||||| |||||||||||| |||| |
|
|
| T |
28152513 |
tgatgcttaagatcttcaagatgttgattaaaaatgtttatctttaaacgcatctcttcaacttctttcgtgacacgctgctcggaatccaatagttttt |
28152414 |
T |
|
| Q |
442 |
gcaatgcattttgagagaattgtaaatcaggaaacaaagcgcgcttttcaacacggtccaaccaatccttatcaaaaccacatttgcacacatctt-taa |
540 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||||||||| | || | | |||||||| ||| |
|
|
| T |
28152413 |
gcaatgcattttgagagaattgtaaatcaggaaacaaagcgcgcatttcaacatcatccaaccactccttatcaaacggaaatctacgcacatcttgtaa |
28152314 |
T |
|
| Q |
541 |
taactcaacacattcagattggcttgaacctaacacatcgaacgcactatgggtttggaggaatttcaatagctcagctagacagttgtaggcataacct |
640 |
Q |
| |
|
|||||||||| ||||||| | |||||||||||||||||| ||| ||||||| ||||| ||||||||||||||||| ||||| | ||||||||||||||| |
|
|
| T |
28152313 |
taactcaacaaattcagagttgcttgaacctaacacatccaacacactatgagtttgaaggaatttcaatagctctgctaggctgttgtaggcataaccc |
28152214 |
T |
|
| Q |
641 |
ttgtatctattgcttagtgaagcgtccgttaaaagaattgaaggatgcttaacaaggaaatcagtcaagtcaacaaagacaagttatcagtagccaaatg |
740 |
Q |
| |
|
|||||||| | || | ||||| |||| ||| ||||| ||||||||||||||||||||| || ||||||||||||||| || ||| |||||||||| |
|
|
| T |
28152213 |
ttgtatctgctactcaatgaagtgtcccttagaagaactgaaggatgcttaacaaggaagtc-----agtcaacaaagacaatttctcaatagccaaatg |
28152119 |
T |
|
| Q |
741 |
attcttggaga |
751 |
Q |
| |
|
||| ||||||| |
|
|
| T |
28152118 |
attattggaga |
28152108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 148; E-Value: 1e-77
Query Start/End: Original strand, 438 - 708
Target Start/End: Complemental strand, 28187424 - 28187153
Alignment:
| Q |
438 |
ttttgcaatgcattttgagagaattgtaaatcaggaaacaaagcgcgcttttcaacacggtccaaccaatccttatcaaaaccacatttgcacacatctt |
537 |
Q |
| |
|
||||||||||||| |||||||| ||||||| |||| ||||||||||| ||||||| | |||||||| ||||||||||||||| |||||| |||||||| |
|
|
| T |
28187424 |
ttttgcaatgcatcttgagagacttgtaaaccaggcaacaaagcgcgtttttcaatatcatccaaccattccttatcaaaaccaaatttgcgcacatctt |
28187325 |
T |
|
| Q |
538 |
-taataactcaacacattcagattggcttgaacctaacacatcgaacgcactatgggtttggaggaatttcaatagctcagctagacagttgtaggcata |
636 |
Q |
| |
|
||||||||||||| ||||||| |||||||||||||||||||| ||| ||||||| ||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
28187324 |
gtaataactcaacaaattcagagtggcttgaacctaacacatccaacacactatgagtttggaggaatttcaatagctcagctaggcagttgtaggcata |
28187225 |
T |
|
| Q |
637 |
acctttgtatctattgcttagtgaagcgtccgttaaaagaattgaaggatgcttaacaaggaaatcagtcaa |
708 |
Q |
| |
|
||| |||||||| || || | ||||| ||| ||||||||| |||||||||||||||| |||||||||||| |
|
|
| T |
28187224 |
acccttgtatctgttactcaatgaagtgtcgtttaaaagaaccgaaggatgcttaacaaagaaatcagtcaa |
28187153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 140; E-Value: 7e-73
Query Start/End: Original strand, 438 - 708
Target Start/End: Original strand, 17743873 - 17744144
Alignment:
| Q |
438 |
ttttgcaatgcattttgagagaattgtaaatcaggaaacaaagcgcgcttttcaacacggtccaaccaatccttatcaaaaccacatttgcacacatctt |
537 |
Q |
| |
|
||||||||||||| |||||||| ||||||| ||||||||||||||||||||||||||| |||||||| | |||||||||| | || ||| |||||||| |
|
|
| T |
17743873 |
ttttgcaatgcatcttgagagacttgtaaaccaggaaacaaagcgcgcttttcaacaccatccaaccatttcttatcaaaaggaaatctgcgcacatctt |
17743972 |
T |
|
| Q |
538 |
-taataactcaacacattcagattggcttgaacctaacacatcgaacgcactatgggtttggaggaatttcaatagctcagctagacagttgtaggcata |
636 |
Q |
| |
|
||||||||| ||| ||||||| | |||||||||||||||||| ||| ||||| | ||||| ||||||||||||||||||||||| || ||||||||||| |
|
|
| T |
17743973 |
gtaataactcgacaaattcagagttgcttgaacctaacacatccaacacactacgagtttgaaggaatttcaatagctcagctaggcaattgtaggcata |
17744072 |
T |
|
| Q |
637 |
acctttgtatctattgcttagtgaagcgtccgttaaaagaattgaaggatgcttaacaaggaaatcagtcaa |
708 |
Q |
| |
|
||| |||||||| || || | ||||| |||| ||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
17744073 |
acccttgtatctgttactcaatgaagtgtcctttaaaagaattgaaggatgcttaacaaagaaatcagtcaa |
17744144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 140; E-Value: 7e-73
Query Start/End: Original strand, 438 - 708
Target Start/End: Original strand, 19045193 - 19045464
Alignment:
| Q |
438 |
ttttgcaatgcattttgagagaattgtaaatcaggaaacaaagcgcgcttttcaacacggtccaaccaatccttatcaaaaccacatttgcacacatctt |
537 |
Q |
| |
|
||||||||||||| |||||||| ||||||| ||||||||||||||||||||||||||| |||||||| | |||||||||| | || ||| |||||||| |
|
|
| T |
19045193 |
ttttgcaatgcatcttgagagacttgtaaaccaggaaacaaagcgcgcttttcaacaccatccaaccatttcttatcaaaaggaaatctgcgcacatctt |
19045292 |
T |
|
| Q |
538 |
-taataactcaacacattcagattggcttgaacctaacacatcgaacgcactatgggtttggaggaatttcaatagctcagctagacagttgtaggcata |
636 |
Q |
| |
|
||||||||| ||| ||||||| | |||||||||||||||||| ||| ||||| | ||||| ||||||||||||||||||||||| || ||||||||||| |
|
|
| T |
19045293 |
gtaataactcgacaaattcagagttgcttgaacctaacacatccaacacactacgagtttgaaggaatttcaatagctcagctaggcaattgtaggcata |
19045392 |
T |
|
| Q |
637 |
acctttgtatctattgcttagtgaagcgtccgttaaaagaattgaaggatgcttaacaaggaaatcagtcaa |
708 |
Q |
| |
|
||| |||||||| || || | ||||| |||| ||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
19045393 |
acccttgtatctgttactcaatgaagtgtcctttaaaagaattgaaggatgcttaacaaagaaatcagtcaa |
19045464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 138; E-Value: 1e-71
Query Start/End: Original strand, 321 - 537
Target Start/End: Complemental strand, 8549927 - 8549713
Alignment:
| Q |
321 |
aatgagaaaaggaaaggttagtgatgcttaatatcttccacatgttgatttgaaatgttaatatttaaacgcatctcgtcaacttccttggttacacgct |
420 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| | |||||||||||| |||||||||||||||||||||| |
|
|
| T |
8549927 |
aatgagaaaaggaaaggttagtgatgcttaagatcttccacatgttgatttaaaatgttaatctataaacgcatctcttcaacttccttggttacacgct |
8549828 |
T |
|
| Q |
421 |
gctgggaatccaatagcttttgcaatgcattttgagagaattgtaaatcaggaaacaaagcgcgcttttcaacacggtccaaccaatccttatcaaaacc |
520 |
Q |
| |
|
|||||||||||| | |||||||||||||||||||||||||||||||||||| | | |||| | |||||||| ||||||||||||||||||||||| |
|
|
| T |
8549827 |
tctgggaatccaagaacttttgcaatgcattttgagagaattgtaaatcagg--atattttgcgcatctcaacacgatccaaccaatccttatcaaaacc |
8549730 |
T |
|
| Q |
521 |
acatttgcacacatctt |
537 |
Q |
| |
|
|||||||| |||||||| |
|
|
| T |
8549729 |
acatttgcgcacatctt |
8549713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 134; E-Value: 3e-69
Query Start/End: Original strand, 420 - 708
Target Start/End: Complemental strand, 27777324 - 27777035
Alignment:
| Q |
420 |
tgctgggaatccaatagcttttgcaatgcattttgagagaattgtaaatcaggaaacaaagcgcgcttttcaacacggtccaaccaatccttatcaaaac |
519 |
Q |
| |
|
||||||||||||||||| ||||| |||||| |||||||||||||| ||||| ||||||||| || |||||||||| ||||||||||| |||||||||| |
|
|
| T |
27777324 |
tgctgggaatccaatagtttttgtaatgcaacttgagagaattgtatatcagaaaacaaagcacgtttttcaacaccatccaaccaatctttatcaaaac |
27777225 |
T |
|
| Q |
520 |
cacatttgcacacatctt-taataactcaacacattcagattggcttgaacctaacacatcgaacgcactatgggtttggaggaatttcaatagctcagc |
618 |
Q |
| |
|
||||| ||| ||||||| |||||||||| || | ||||| ||||||||||||||||||| ||| |||||||| ||||||||||||||||||||||||| |
|
|
| T |
27777224 |
cacatctgcgtacatcttgtaataactcatcaaactcagagcggcttgaacctaacacatccaacacactatggttttggaggaatttcaatagctcagc |
27777125 |
T |
|
| Q |
619 |
tagacagttgtaggcataacctttgtatctattgcttagtgaagcgtccgttaaaagaattgaaggatgcttaacaaggaaatcagtcaa |
708 |
Q |
| |
|
||||||||||||| ||||| ||||||||||| || ||||||| |||| | ||||||| ||||||| ||| |||| ||||||||||| |
|
|
| T |
27777124 |
aagacagttgtaggaataactcttgtatctattactcagtgaagtgtccctcaaaagaacagaaggattgttatcaagaaaatcagtcaa |
27777035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 132; E-Value: 4e-68
Query Start/End: Original strand, 438 - 708
Target Start/End: Complemental strand, 28057950 - 28057679
Alignment:
| Q |
438 |
ttttgcaatgcattttgagagaattgtaaatcaggaaacaaagcgcgcttttcaacacggtccaaccaatccttatcaaaaccacatttgcacacatctt |
537 |
Q |
| |
|
||||||||||||| |||||||| ||||||| |||| |||||| |||| ||||||| | |||||||| ||||||||||||||| |||||| |||||||| |
|
|
| T |
28057950 |
ttttgcaatgcatcttgagagacttgtaaaccaggcaacaaaacgcgtttttcaatatcatccaaccattccttatcaaaaccaaatttgcgcacatctt |
28057851 |
T |
|
| Q |
538 |
-taataactcaacacattcagattggcttgaacctaacacatcgaacgcactatgggtttggaggaatttcaatagctcagctagacagttgtaggcata |
636 |
Q |
| |
|
||||||||||||| ||||||| |||||||||||||||||||| ||| ||||||| ||||||||||||||||||||||||||||| || ||||||||||| |
|
|
| T |
28057850 |
gtaataactcaacaaattcagagtggcttgaacctaacacatccaacacactatgagtttggaggaatttcaatagctcagctaggcaattgtaggcata |
28057751 |
T |
|
| Q |
637 |
acctttgtatctattgcttagtgaagcgtccgttaaaagaattgaaggatgcttaacaaggaaatcagtcaa |
708 |
Q |
| |
|
||| |||||||| || || | ||||| |||| | ||| ||| |||||||| ||||||| |||||||||||| |
|
|
| T |
28057750 |
acccttgtatctgttactcaatgaagtgtccttcaaacgaacagaaggatgtttaacaaagaaatcagtcaa |
28057679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 132; E-Value: 4e-68
Query Start/End: Original strand, 438 - 708
Target Start/End: Complemental strand, 28068375 - 28068104
Alignment:
| Q |
438 |
ttttgcaatgcattttgagagaattgtaaatcaggaaacaaagcgcgcttttcaacacggtccaaccaatccttatcaaaaccacatttgcacacatctt |
537 |
Q |
| |
|
||||||||||||| |||||||| ||||||| |||| |||||| |||| ||||||| | |||||||| ||||||||||||||| |||||| |||||||| |
|
|
| T |
28068375 |
ttttgcaatgcatcttgagagacttgtaaaccaggcaacaaaacgcgtttttcaatatcatccaaccattccttatcaaaaccaaatttgcgcacatctt |
28068276 |
T |
|
| Q |
538 |
-taataactcaacacattcagattggcttgaacctaacacatcgaacgcactatgggtttggaggaatttcaatagctcagctagacagttgtaggcata |
636 |
Q |
| |
|
||||||||||||| ||||||| |||||||||||||||||||| ||| ||||||| ||||||||||||||||||||||||||||| || ||||||||||| |
|
|
| T |
28068275 |
gtaataactcaacaaattcagagtggcttgaacctaacacatccaacacactatgagtttggaggaatttcaatagctcagctaggcaattgtaggcata |
28068176 |
T |
|
| Q |
637 |
acctttgtatctattgcttagtgaagcgtccgttaaaagaattgaaggatgcttaacaaggaaatcagtcaa |
708 |
Q |
| |
|
||| |||||||| || || | ||||| |||| | ||| ||| |||||||| ||||||| |||||||||||| |
|
|
| T |
28068175 |
acccttgtatctgttactcaatgaagtgtccttcaaacgaacagaaggatgtttaacaaagaaatcagtcaa |
28068104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 486 - 751
Target Start/End: Original strand, 27430393 - 27430654
Alignment:
| Q |
486 |
ttttcaacacggtccaaccaatccttatcaaaaccacatttgcacacatctt-taataactcaacacattcagattggcttgaacctaacacatcgaacg |
584 |
Q |
| |
|
|||||||||| |||||||| |||||||||||| | || | | |||||||| ||||||||||||| ||||||| ||||||||||||| |||||| ||| |
|
|
| T |
27430393 |
ttttcaacaccatccaaccattccttatcaaaaggaaatctacgcacatcttgtaataactcaacaaattcagagtggcttgaacctaccacatccaaca |
27430492 |
T |
|
| Q |
585 |
cactatgggtttggaggaatttcaatagctcagctagacagttgtaggcataacctttgtatctattgcttagtgaagcgtccgttaaaagaattgaagg |
684 |
Q |
| |
|
|| |||| | ||||||||||||||||||||||||||| ||||||||||||||||| |||||||| || || | ||||| |||| ||||| ||| ||||| |
|
|
| T |
27430493 |
cattatgtggttggaggaatttcaatagctcagctaggcagttgtaggcataacccttgtatctgttactcaatgaagggtcctttaaatgaacagaagg |
27430592 |
T |
|
| Q |
685 |
atgcttaacaaggaaatcagtcaagtcaacaaagacaagttatcagtagccaaatgattcttggaga |
751 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||| || ||||||||||||||||||||| |
|
|
| T |
27430593 |
atgcttaacaaggaaatc-----agtcaacaaagacaagttctcgatagccaaatgattcttggaga |
27430654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 181 - 318
Target Start/End: Complemental strand, 8550096 - 8549959
Alignment:
| Q |
181 |
tcgtcaagtttactgtgagttattgttgttggcagtttggaatggaacatgcttatcagtgtggaggttggattgaattgaggggtgatgctggtgagta |
280 |
Q |
| |
|
||||||| ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
8550096 |
tcgtcaaatttactgtgagttatggttgttggcggtttggaatggaacatgcttatcagtgtggaggttggattgaattgaggggtgatgctggtcagta |
8549997 |
T |
|
| Q |
281 |
aacattaagatggtcgatattaatcttgtaatgtaaag |
318 |
Q |
| |
|
|| ||| ||||||||||||||||||||||||||||||| |
|
|
| T |
8549996 |
aagatttagatggtcgatattaatcttgtaatgtaaag |
8549959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 113; E-Value: 9e-57
Query Start/End: Original strand, 438 - 749
Target Start/End: Complemental strand, 11421989 - 11421682
Alignment:
| Q |
438 |
ttttgcaatgcattttgagagaattgtaaatcaggaaacaaagcgcgcttttcaacacggtccaaccaatccttatcaaaaccacatttgcacacatctt |
537 |
Q |
| |
|
||||||||||||| |||||||| ||||||| ||||||||||||||||||||||||||| |||||||| || || |||||| | || | | |||||||| |
|
|
| T |
11421989 |
ttttgcaatgcatcttgagagacttgtaaaccaggaaacaaagcgcgcttttcaacaccatccaaccattctttgtcaaaaggaaatctacgcacatctt |
11421890 |
T |
|
| Q |
538 |
-taataactcaacacattcagattggcttgaacctaacacatcgaacgcactatgggtttggaggaatttcaatagctcagctagacagttgtaggcata |
636 |
Q |
| |
|
|| |||||||||| || ||| | |||||||||||||| || ||| |||||||||| |||||||||||||||||||||||||| || ||||||||||| |
|
|
| T |
11421889 |
gtattaactcaacaaatgtagagtttcttgaacctaacacgtctaacacactatgggtctggaggaatttcaatagctcagctaggcaattgtaggcata |
11421790 |
T |
|
| Q |
637 |
acctttgtatctattgcttagtgaagcgtccgttaaaagaattgaaggatgcttaacaaggaaatcagtcaagtcaacaaagacaagttatcagtagcca |
736 |
Q |
| |
|
||| |||||||| | || | ||||| |||| ||| ||||| || ||||||||||||||||| || |||||||||||||||||| ||| |||||| |
|
|
| T |
11421789 |
acccttgtatctgctactcaatgaagtgtcccttagaagaacagacggatgcttaacaaggaattc-----agtcaacaaagacaagttctcaatagcca |
11421695 |
T |
|
| Q |
737 |
aatgattcttgga |
749 |
Q |
| |
|
|||| |||||||| |
|
|
| T |
11421694 |
aatggttcttgga |
11421682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 110; E-Value: 5e-55
Query Start/End: Original strand, 181 - 314
Target Start/End: Original strand, 8537896 - 8538029
Alignment:
| Q |
181 |
tcgtcaagtttactgtgagttattgttgttggcagtttggaatggaacatgcttatcagtgtggaggttggattgaattgaggggtgatgctggtgagta |
280 |
Q |
| |
|
||||||| ||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |
|
|
| T |
8537896 |
tcgtcaaatttacagtgagttatggttgttggcagtttggaatggaacatgcttatcagtgtggaggttggattgaattgaggggtgatgttggggagta |
8537995 |
T |
|
| Q |
281 |
aacattaagatggtcgatattaatcttgtaatgt |
314 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| |
|
|
| T |
8537996 |
aacatttagatggtcgatattaatcttgtaatgt |
8538029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 438 - 751
Target Start/End: Complemental strand, 28163414 - 28163105
Alignment:
| Q |
438 |
ttttgcaatgcattttgagagaattgtaaatcaggaaacaaagcgcgcttttcaacacggtccaaccaatccttatcaaaaccacatttgcacacatctt |
537 |
Q |
| |
|
||||||||||||| |||||||| ||||||| |||| ||||||||||||||||| | | |||||||| ||||||| ||| | || ||| |||||| |
|
|
| T |
28163414 |
ttttgcaatgcatcttgagagacttgtaaaccaggcaacaaagcgcgcttttcgatatcatccaaccattccttatgaaatggaaatctgcgtgcatctt |
28163315 |
T |
|
| Q |
538 |
-taataactcaacacattcagattggcttgaacctaacacatcgaacgcactatgggtttggaggaatttcaatagctcagctagacagttgtaggcata |
636 |
Q |
| |
|
|| |||||||||| ||||||| |||||||||||||||||||| ||| ||||||| ||||||||||||||||||||||| |||||||| ||||||| ||| |
|
|
| T |
28163314 |
gtagtaactcaacaaattcagagtggcttgaacctaacacatccaacacactatgagtttggaggaatttcaatagctccgctagacaattgtaggtata |
28163215 |
T |
|
| Q |
637 |
acctttgtatctattgcttagtgaagcgtccgttaaaagaattgaaggatgcttaacaaggaaatcagtcaagtcaacaaagacaagttatcagtagcca |
736 |
Q |
| |
|
||| |||||||| || || | ||||| ||| ||||||||| ||||||||||||||| |||||||| |||||||||||||||||||| | | | |
|
|
| T |
28163214 |
acccttgtatctgttactcaatgaagtgtcgtttaaaagaaccaaaggatgcttaacaaagaaatcag-----tcaacaaagacaagttatcataatcga |
28163120 |
T |
|
| Q |
737 |
aatgattcttggaga |
751 |
Q |
| |
|
|||| |||||||||| |
|
|
| T |
28163119 |
aatgcttcttggaga |
28163105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 342 - 488
Target Start/End: Original strand, 28680533 - 28680679
Alignment:
| Q |
342 |
tgatgcttaatatcttccacatgttgatttgaaatgttaatatttaaacgcatctcgtcaacttccttggttacacgctgctgggaatccaatagctttt |
441 |
Q |
| |
|
|||||||||| ||||||||||||||||||| ||||||| || || ||||| ||||| ||||||||||||| ||| |||||||||||||||||||||||| |
|
|
| T |
28680533 |
tgatgcttaagatcttccacatgttgatttaaaatgtttatcttcaaacggatctcttcaacttccttggcgacatgctgctgggaatccaatagctttt |
28680632 |
T |
|
| Q |
442 |
gcaatgcattttgagagaattgtaaatcaggaaacaaagcgcgcttt |
488 |
Q |
| |
|
||| |||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28680633 |
gcattgcactttgagagaattgtaaatcaggaaacaaagcgcgcttt |
28680679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 95; E-Value: 5e-46
Query Start/End: Original strand, 538 - 708
Target Start/End: Original strand, 18078695 - 18078865
Alignment:
| Q |
538 |
taataactcaacacattcagattggcttgaacctaacacatcgaacgcactatgggtttggaggaatttcaatagctcagctagacagttgtaggcataa |
637 |
Q |
| |
|
||||||||||||| ||||||| |||||||||||||||||||| ||| || |||| ||||||||||||||||||||||||||||| || |||||||||||| |
|
|
| T |
18078695 |
taataactcaacaaattcagaatggcttgaacctaacacatccaacacattatgcgtttggaggaatttcaatagctcagctaggcaattgtaggcataa |
18078794 |
T |
|
| Q |
638 |
cctttgtatctattgcttagtgaagcgtccgttaaaagaattgaaggatgcttaacaaggaaatcagtcaa |
708 |
Q |
| |
|
|| |||||||| || || | ||||| |||| |||| |||| |||||||| |||||||| |||||||||||| |
|
|
| T |
18078795 |
cccttgtatctgttactcaatgaagtgtcctttaagagaactgaaggattcttaacaaagaaatcagtcaa |
18078865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 342 - 708
Target Start/End: Original strand, 27458094 - 27458461
Alignment:
| Q |
342 |
tgatgcttaatatcttccacatgttgatttgaaatgttaatatttaaacgcatctcgtcaacttccttggttacacgctgctgggaatccaatagctttt |
441 |
Q |
| |
|
|||||||||| ||||||||||| |||| || | | || || || ||||||| | | ||||||||||||| || | |||| ||||||||| || |||| |
|
|
| T |
27458094 |
tgatgcttaagatcttccacattttgacttaagacgtctatcttaaaacgcaacacttcaacttccttggagacttgttgcttggaatccaacagttttt |
27458193 |
T |
|
| Q |
442 |
gcaatgcattttgagagaattgtaaatcaggaaacaaagcgcgcttttcaacacggtccaaccaatccttatcaaaaccacatttgcacacatctt-taa |
540 |
Q |
| |
|
| ||| |||||||||||| ||||| ||| | |||||| || || |||| | || ||||||||| ||||||||||| || | ||| ||||||| ||| |
|
|
| T |
27458194 |
gaaattcattttgagagacttgtatatccgaaaacaatgcacgtctttcgagactatccaaccaagccttatcaaaagcaaagctgcgtacatcttgtaa |
27458293 |
T |
|
| Q |
541 |
taactcaacacattcagattggcttgaacctaacacatcgaacgcactatgggtttggaggaatttcaatagctcagctagacagttgtaggcataacct |
640 |
Q |
| |
|
||||| |||| ||| ||| |||||||||| |||||||| ||| ||||||||||||| || |||| || |||||||| |||||| ||| |||||||| |
|
|
| T |
27458294 |
taacttaacaaatttagagcggcttgaacccaacacatcaaacacactatgggtttgaagaaattgtaacagctcagcgagacagccgtaagcataaccc |
27458393 |
T |
|
| Q |
641 |
ttgtatctattgcttagtgaagcgtccgttaaaagaattgaaggatgcttaacaaggaaatcagtcaa |
708 |
Q |
| |
|
||||||||||| || ||||| | |||| ||||||||| |||||| ||||||||||||||||||||||| |
|
|
| T |
27458394 |
ttgtatctattactcagtgatgtgtcctttaaaagaagtgaagggtgcttaacaaggaaatcagtcaa |
27458461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 399 - 708
Target Start/End: Original strand, 26203947 - 26204257
Alignment:
| Q |
399 |
tcaacttccttggttacacgctgctgggaatccaatagcttttgcaatgcattttgagagaattgtaaatcaggaaacaaagcgcgcttttcaacacggt |
498 |
Q |
| |
|
||||| |||||||| || | |||| ||||||||||| || ||||| |||| ||| || | ||||| |||||| |||||||| ||| |||| |||| | |
|
|
| T |
26203947 |
tcaacatccttggtaacctgttgcttggaatccaataatttctgcaaggcatcttgtgatacttgtatatcagggaacaaagcccgcctttcgacaccat |
26204046 |
T |
|
| Q |
499 |
ccaaccaatccttatcaaaaccacatttgcacacatctt-taataactcaacacattcagattggcttgaacctaacacatcgaacgcactatgggtttg |
597 |
Q |
| |
|
||||||||||||||||||||||| | || | |||||| ||||||||| | | ||||||| ||| ||| ||||| || || || || ||||||||| |
|
|
| T |
26204047 |
ccaaccaatccttatcaaaaccaaagctgtgcgcatcttgtaataactccagaaattcagagtggaatgagcctaatacttccaatacattatgggtttt |
26204146 |
T |
|
| Q |
598 |
gaggaatttcaatagctcagctagacagttgtaggcataacctttgtatctattgcttagtgaagcgtccgttaaaagaattgaaggatgcttaacaagg |
697 |
Q |
| |
|
||||||||||||||| |||||||| | ||||||||| |||| ||||||||||| || ||||||| ||| ||||| | | |||||||||||||||| | |
|
|
| T |
26204147 |
gaggaatttcaatagttcagctagtaaattgtaggcacaacccttgtatctattactaagtgaagtgtcttttaaacggacagaaggatgcttaacaaag |
26204246 |
T |
|
| Q |
698 |
aaatcagtcaa |
708 |
Q |
| |
|
||||||||||| |
|
|
| T |
26204247 |
aaatcagtcaa |
26204257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 399 - 751
Target Start/End: Original strand, 28508362 - 28508710
Alignment:
| Q |
399 |
tcaacttccttggttacacgctgctgggaatccaatagcttttgcaatgcattttgagagaattgtaaatcaggaaacaaagcgcgcttttcaacacggt |
498 |
Q |
| |
|
||||| |||||||| || | |||| |||||| |||| |||||||| |||| ||| || | || || |||||||||||||||||| | ||||||| | |
|
|
| T |
28508362 |
tcaacatccttggtaacctgttgcttggaatctaataaattttgcaaggcatcttgggacacttttatttcaggaaacaaagcgcgcctctcaacaccat |
28508461 |
T |
|
| Q |
499 |
ccaaccaatccttatcaaaaccacatttgcacacatctt-taataactcaacacattcagattggcttgaacctaacacatcgaacgcactatgggtttg |
597 |
Q |
| |
|
||||||||||||||||||||||| | ||| | |||||| || |||||| ||| ||| ||| |||| || || || || || ||| ||||||||||| |
|
|
| T |
28508462 |
ccaaccaatccttatcaaaaccaaagctgcgcgcatcttgtattaactccacaaatttagagtggcacgaccccaatacttccaacatactatgggtttc |
28508561 |
T |
|
| Q |
598 |
gaggaatttcaatagctcagctagacagttgtaggcataacctttgtatctattgcttagtgaagcgtccgttaaaagaattgaaggatgcttaacaagg |
697 |
Q |
| |
|
|||||||||||||| |||||||| | ||||||||| |||| ||||||||||| || |||| || |||| | ||| ||| ||||||| |||||||||| |
|
|
| T |
28508562 |
aaggaatttcaatagttcagctagtaaattgtaggcacaacccttgtatctattactaagtgcagtgtccttcaaatgaacagaaggattcttaacaagg |
28508661 |
T |
|
| Q |
698 |
aaatcagtcaagtcaacaaagacaagttatcagtagccaaatgattcttggaga |
751 |
Q |
| |
|
||| | |||||||||||||||||| ||| | |||||| ||||||||||| |
|
|
| T |
28508662 |
aaaac-----agtcaacaaagacaagttctcacaatccaaataattcttggaga |
28508710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #24
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 194 - 318
Target Start/End: Complemental strand, 54385565 - 54385441
Alignment:
| Q |
194 |
tgtgagttattgttgttggcagtttggaatggaacatgcttatcagtgtggaggttggattgaattgaggggtgatgctggtgagtaaacattaagatgg |
293 |
Q |
| |
|
|||||||||| |||||||| | ||||||||||||||||||||||||||||| ||||||| ||||| |||||||||||||||||||||||||| ||| |
|
|
| T |
54385565 |
tgtgagttatggttgttggtattttggaatggaacatgcttatcagtgtggtggttggagtgaatggaggggtgatgctggtgagtaaacatctagagaa |
54385466 |
T |
|
| Q |
294 |
tcgatattaatcttgtaatgtaaag |
318 |
Q |
| |
|
||||| ||||| | ||||||||||| |
|
|
| T |
54385465 |
tcgatgttaatttggtaatgtaaag |
54385441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #25
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 399 - 708
Target Start/End: Original strand, 26109655 - 26109965
Alignment:
| Q |
399 |
tcaacttccttggttacacgctgctgggaatccaatagcttttgcaatgcattttgagagaattgtaaatcaggaaacaaagcgcgcttttcaacacggt |
498 |
Q |
| |
|
||||| |||||||| || | |||| ||||||||||| || ||||| |||| ||| || | ||||| |||||| |||||||| ||| |||| |||| | |
|
|
| T |
26109655 |
tcaacatccttggtaacctgttgcttggaatccaataatttctgcaaggcatcttgtgatacttgtatatcagggaacaaagcccgcctttcgacaccat |
26109754 |
T |
|
| Q |
499 |
ccaaccaatccttatcaaaaccacatttgcacacatctt-taataactcaacacattcagattggcttgaacctaacacatcgaacgcactatgggtttg |
597 |
Q |
| |
|
||||||||||||||||||||||| | || | |||||| ||||||||| | | ||||||| ||| ||| ||||| | || || | ||||||||| |
|
|
| T |
26109755 |
ccaaccaatccttatcaaaaccaaagctgtgcgcatcttgtaataactccataaattcagagtggtatgatcctaattcttccaatatattatgggtttt |
26109854 |
T |
|
| Q |
598 |
gaggaatttcaatagctcagctagacagttgtaggcataacctttgtatctattgcttagtgaagcgtccgttaaaagaattgaaggatgcttaacaagg |
697 |
Q |
| |
|
||||||||||||||| |||||||| | ||||||||| |||| ||||||||||| || ||||||| ||| ||||| | | |||||||||||||||| | |
|
|
| T |
26109855 |
gaggaatttcaatagttcagctagtaaattgtaggcacaacccttgtatctattactaagtgaagtgtcttttaaacggacagaaggatgcttaacaaag |
26109954 |
T |
|
| Q |
698 |
aaatcagtcaa |
708 |
Q |
| |
|
||||||||||| |
|
|
| T |
26109955 |
aaatcagtcaa |
26109965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #26
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 11 - 84
Target Start/End: Original strand, 8537798 - 8537871
Alignment:
| Q |
11 |
atgaagccatcgaattcaagaatttgcaaatgtgatgtaaaatgaacgtgtatattgaataatagatactcaaa |
84 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| |
|
|
| T |
8537798 |
atgaagccatcgaattcaagaatttgcaaatgtgatgtaaaatgaacgtgtattttgtataatagatactcaaa |
8537871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #27
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 342 - 521
Target Start/End: Complemental strand, 27357102 - 27356923
Alignment:
| Q |
342 |
tgatgcttaatatcttccacatgttgatttgaaatgttaatatttaaacgcatctcgtcaacttccttggttacacgctgctgggaatccaatagctttt |
441 |
Q |
| |
|
|||||||||| |||||||||||||||| || |||||| || || ||||||| | | |||||||| |||| || | |||| ||||||||| || |||| |
|
|
| T |
27357102 |
tgatgcttaagatcttccacatgttgacttaaaatgtctattttcaaacgcaacacttcaacttctttggagacttgttgcttggaatccaacagttttt |
27357003 |
T |
|
| Q |
442 |
gcaatgcattttgagagaattgtaaatcaggaaacaaagcgcgcttttcaacacggtccaaccaatccttatcaaaacca |
521 |
Q |
| |
|
||||||||| |||||||| || || ||| | ||||||||| || ||||||||| |||||||||||||||||||||||| |
|
|
| T |
27357002 |
gcaatgcatcttgagagacttttatatccgaaaacaaagcacgtctttcaacactatccaaccaatccttatcaaaacca |
27356923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #28
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 342 - 700
Target Start/End: Complemental strand, 28137178 - 28136819
Alignment:
| Q |
342 |
tgatgcttaatatcttccacatgttgatttgaaatgttaatatttaaacgcatctcgtcaacttccttggttacacgctgctgggaatccaatagctttt |
441 |
Q |
| |
|
|||||||||| |||||||||||||||| || |||| | || |||||| ||| | | |||||||||||||| | | |||| ||||||||||| |||| |
|
|
| T |
28137178 |
tgatgcttaagatcttccacatgttgacttaaaatctctatctttaaatgcaacacttcaacttccttggtaatttgttgcttggaatccaataattttt |
28137079 |
T |
|
| Q |
442 |
gcaatgcattttgagagaattgtaaatcaggaaacaaagcgcgcttttcaacacggtccaaccaatccttatcaaaaccacatttgcacacatct-ttaa |
540 |
Q |
| |
|
||| || | |||||| | ||||| ||||||||||| ||| ||| |||| |||| |||||||||||||||||||||||| | |||| | ||||| || |
|
|
| T |
28137078 |
gcatggcgtcttgagatatttgtatatcaggaaacatagcccgcctttcgacactatccaaccaatccttatcaaaaccaaagttgcgcgcatctagtag |
28136979 |
T |
|
| Q |
541 |
taactcaacacattcagattggcttgaacctaacacatcgaacgcactatgggtttggaggaatttcaatagctcagctagacagttgtaggcataacct |
640 |
Q |
| |
|
|| || ||| ||||||| |||| ||| ||||| ||||| || ||||||| |||| ||||||||||||||||| || | ||||||| ||| |||| |
|
|
| T |
28136978 |
tagatccacaaattcagagtggcatgagcctaatacatccaagacactatgagtttcaaggaatttcaatagctctgccaataagttgtaagcacaaccc |
28136879 |
T |
|
| Q |
641 |
ttgtatctattgcttagtgaagcgtccgttaaaagaattgaaggatgcttaacaaggaaa |
700 |
Q |
| |
|
||| ||||||| | |||||| ||| ||||| ||| ||||||| |||||||||||| |
|
|
| T |
28136878 |
ttgaatctattacgcagtgaattgtcttttaaacgaacagaaggatttttaacaaggaaa |
28136819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #29
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 467 - 708
Target Start/End: Original strand, 26138607 - 26138849
Alignment:
| Q |
467 |
atcaggaaacaaagcgcgcttttcaacacggtccaaccaatccttatcaaaaccacatttgcacacatctt-taataactcaacacattcagattggctt |
565 |
Q |
| |
|
||||||||||||||| ||| |||| |||| |||||||||||||||||||||||| | | | |||||| ||||||||| ||| ||||||| ||| | |
|
|
| T |
26138607 |
atcaggaaacaaagcccgcctttcgacaccatccaaccaatccttatcaaaaccaaagcttcgtgcatcttgtaataactccacaaattcagagtggaat |
26138706 |
T |
|
| Q |
566 |
gaacctaacacatcgaacgcactatgggtttggaggaatttcaatagctcagctagacagttgtaggcataacctttgtatctattgcttagtgaagcgt |
665 |
Q |
| |
|
| || || || || || ||||||||||| ||||||||||||||| | |||||| |||||||||| |||| |||||| |||| || ||||||| || |
|
|
| T |
26138707 |
gtgcccaatacttccaatatactatgggttttgaggaatttcaatagtttagctagtacgttgtaggcacaacccttgtatgtattactaagtgaagtgt |
26138806 |
T |
|
| Q |
666 |
ccgttaaaagaattgaaggatgcttaacaaggaaatcagtcaa |
708 |
Q |
| |
|
| ||||| || |||||||||||||||| |||||||||||| |
|
|
| T |
26138807 |
cttttaaacagatagaaggatgcttaacaaagaaatcagtcaa |
26138849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #30
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 399 - 708
Target Start/End: Original strand, 26126432 - 26126742
Alignment:
| Q |
399 |
tcaacttccttggttacacgctgctgggaatccaatagcttttgcaatgcattttgagagaattgtaaatcaggaaacaaagcgcgcttttcaacacggt |
498 |
Q |
| |
|
|||||||| ||||| ||| | | || |||||||||||| || | ||| ||| |||||||| ||| | ||||||| |||||| || | |||| |||| | |
|
|
| T |
26126432 |
tcaacttctttggtaacatgttccttggaatccaatagtttctttaatacatcttgagagacttgcatatcaggacacaaagtgctcctttcgacaccat |
26126531 |
T |
|
| Q |
499 |
ccaaccaatccttatcaaaaccacatttgcacacatctt-taataactcaacacattcagattggcttgaacctaacacatcgaacgcactatgggtttg |
597 |
Q |
| |
|
||||||||||||||||||||||| | | | |||||| ||||||||| || ||||||| ||| ||| || || || || ||| |||| ||||||| |
|
|
| T |
26126532 |
ccaaccaatccttatcaaaaccaaaccttcgtgcatcttgtaataactcctcaaattcagagtggaatgaccccaatacttccaacacactgtgggtttt |
26126631 |
T |
|
| Q |
598 |
gaggaatttcaatagctcagctagacagttgtaggcataacctttgtatctattgcttagtgaagcgtccgttaaaagaattgaaggatgcttaacaagg |
697 |
Q |
| |
|
||| |||||||| || |||||||| | ||||| ||| |||| ||||||||||| || ||||||| ||| ||||| | | |||||||||||||||| | |
|
|
| T |
26126632 |
gagaaatttcaacagttcagctagtaaattgtaagcacaacccttgtatctattactaagtgaagtgtcttttaaacggacagaaggatgcttaacaaag |
26126731 |
T |
|
| Q |
698 |
aaatcagtcaa |
708 |
Q |
| |
|
|||||| |||| |
|
|
| T |
26126732 |
aaatcattcaa |
26126742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #31
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 498 - 751
Target Start/End: Original strand, 28479278 - 28479527
Alignment:
| Q |
498 |
tccaaccaatccttatcaaaaccacatttgcacacatctt-taataactcaacacattcagattggcttgaacctaacacatcgaacgcactatgggttt |
596 |
Q |
| |
|
||||||||||||||||| |||||| | ||| | |||||| ||||||||| ||| ||| ||| |||| | || || || || ||| |||||||||||| |
|
|
| T |
28479278 |
tccaaccaatccttatctaaaccaaagctgcgcgcatcttgtaataactccacaaatttagagtggcacggccccaatacttccaacacactatgggttt |
28479377 |
T |
|
| Q |
597 |
ggaggaatttcaatagctcagctagacagttgtaggcataacctttgtatctattgcttagtgaagcgtccgttaaaagaattgaaggatgcttaacaag |
696 |
Q |
| |
|
|||||||||||||| || ||||| | ||||||||| |||| ||||||||||| || |||| | |||| ||||| ||| ||||||| | ||||||| |
|
|
| T |
28479378 |
caaggaatttcaatagttcggctagtaaattgtaggcacaacccttgtatctattactcagtgcaatgtcctttaaacgaacagaaggattcctaacaag |
28479477 |
T |
|
| Q |
697 |
gaaatcagtcaagtcaacaaagacaagttatcagtagccaaatgattcttggaga |
751 |
Q |
| |
|
|||| | |||||||||||||||||| ||| | |||||||||||||||||| |
|
|
| T |
28479478 |
gaaagc-----agtcaacaaagacaagttctcacaatccaaatgattcttggaga |
28479527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #32
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 467 - 708
Target Start/End: Original strand, 26232067 - 26232309
Alignment:
| Q |
467 |
atcaggaaacaaagcgcgcttttcaacacggtccaaccaatccttatcaaaaccacatttgcacacatctt-taataactcaacacattcagattggctt |
565 |
Q |
| |
|
||||||| |||||| |||| |||| |||| |||||||||||||||||||||||| | | | |||||| ||||||||| || ||||||| ||| | |
|
|
| T |
26232067 |
atcaggacacaaagtgcgcctttcgacaccatccaaccaatccttatcaaaaccaaaccttcgtgcatcttgtaataactcctcaaattcagagtggaat |
26232166 |
T |
|
| Q |
566 |
gaacctaacacatcgaacgcactatgggtttggaggaatttcaatagctcagctagacagttgtaggcataacctttgtatctattgcttagtgaagcgt |
665 |
Q |
| |
|
|| || || || || ||| ||||||| |||| ||||||||||| ||| ||||||| | ||||||||| |||| ||||||||||| || ||||||| || |
|
|
| T |
26232167 |
gagcccaatacttccaacacactatgagttttgaggaatttcagtagttcagctaataaattgtaggcacaacccttgtatctattactaagtgaagtgt |
26232266 |
T |
|
| Q |
666 |
ccgttaaaagaattgaaggatgcttaacaaggaaatcagtcaa |
708 |
Q |
| |
|
| ||||| | | ||||||| |||||||| ||||||| |||| |
|
|
| T |
26232267 |
cttttaaacggacagaaggattcttaacaaagaaatcattcaa |
26232309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #33
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 240 - 318
Target Start/End: Complemental strand, 38701349 - 38701271
Alignment:
| Q |
240 |
tgtggaggttggattgaattgaggggtgatgctggtgagtaaacattaagatggtcgatattaatcttgtaatgtaaag |
318 |
Q |
| |
|
||||| ||||||| |||||||||||||||||||||||||||||||| ||||| ||||| ||||| | ||||||||||| |
|
|
| T |
38701349 |
tgtggtggttggagtgaattgaggggtgatgctggtgagtaaacatctagatgatcgatgttaatttggtaatgtaaag |
38701271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #34
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 399 - 701
Target Start/End: Original strand, 26176483 - 26176786
Alignment:
| Q |
399 |
tcaacttccttggttacacgctgctgggaatccaatagcttttgcaatgcattttgagagaattgtaaatcaggaaacaaagcgcgcttttcaacacggt |
498 |
Q |
| |
|
|||||||| ||||| ||| | | || |||||||||||| || | ||| ||| |||||| | ||| | ||||||| |||||| || | |||| |||| | |
|
|
| T |
26176483 |
tcaacttctttggtaacatgttccttggaatccaatagtttctttaatacatcttgagaaacttgcatatcaggacacaaagtgctcctttcgacaccat |
26176582 |
T |
|
| Q |
499 |
ccaaccaatccttatcaaaaccacatttgcacacatctt-taataactcaacacattcagattggcttgaacctaacacatcgaacgcactatgggtttg |
597 |
Q |
| |
|
||||||||||||||||||||||| | | | |||||| ||||||||| || ||||||| ||| ||| || || || || ||| |||| ||||||| |
|
|
| T |
26176583 |
ccaaccaatccttatcaaaaccaaaccttcgtgcatcttgtaataactcctcaaattcagagtggaatgagcccaatacttccaacacactgtgggtttt |
26176682 |
T |
|
| Q |
598 |
gaggaatttcaatagctcagctagacagttgtaggcataacctttgtatctattgcttagtgaagcgtccgttaaaagaattgaaggatgcttaacaagg |
697 |
Q |
| |
|
|||||||||||| || |||||||| | ||||| ||| |||| ||||||||||| || ||||||| ||| | ||| | | |||||||||||||||| | |
|
|
| T |
26176683 |
gaggaatttcaacagttcagctagtaaattgtaagcacaacccttgtatctattactaagtgaagtgtctttaaaacggacagaaggatgcttaacaaag |
26176782 |
T |
|
| Q |
698 |
aaat |
701 |
Q |
| |
|
|||| |
|
|
| T |
26176783 |
aaat |
26176786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #35
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 11 - 61
Target Start/End: Complemental strand, 7603277 - 7603227
Alignment:
| Q |
11 |
atgaagccatcgaattcaagaatttgcaaatgtgatgtaaaatgaacgtgt |
61 |
Q |
| |
|
|||||| |||||||||||||||||||| |||||||||| |||||| |||| |
|
|
| T |
7603277 |
atgaagtcatcgaattcaagaatttgcgcatgtgatgtagaatgaatgtgt |
7603227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 757 - 786
Target Start/End: Original strand, 26138943 - 26138972
Alignment:
| Q |
757 |
ttgagaagggtcctctgaaattataggaaa |
786 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
26138943 |
ttgagaagggtcctctgaaattataggaaa |
26138972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0257 (Bit Score: 136; Significance: 2e-70; HSPs: 1)
Name: scaffold0257
Description:
Target: scaffold0257; HSP #1
Raw Score: 136; E-Value: 2e-70
Query Start/End: Original strand, 438 - 708
Target Start/End: Complemental strand, 19865 - 19594
Alignment:
| Q |
438 |
ttttgcaatgcattttgagagaattgtaaatcaggaaacaaagcgcgcttttcaacacggtccaaccaatccttatcaaaaccacatttgcacacatctt |
537 |
Q |
| |
|
||||||||||||| |||||||| |||| || |||||||||||||||||||||| ||| |||||||| | |||||||||||||||||||| |||||||| |
|
|
| T |
19865 |
ttttgcaatgcatcttgagagacttgtgaaccaggaaacaaagcgcgcttttccacatcatccaaccatttcttatcaaaaccacatttgcgcacatctt |
19766 |
T |
|
| Q |
538 |
-taataactcaacacattcagattggcttgaacctaacacatcgaacgcactatgggtttggaggaatttcaatagctcagctagacagttgtaggcata |
636 |
Q |
| |
|
|| |||||||||| ||||||| |||||||||||||||||||| ||| ||||||| ||||||||||||||||||||||||||||| || ||||||||||| |
|
|
| T |
19765 |
gtagtaactcaacaaattcagagtggcttgaacctaacacatccaacacactatgagtttggaggaatttcaatagctcagctaggcaattgtaggcata |
19666 |
T |
|
| Q |
637 |
acctttgtatctattgcttagtgaagcgtccgttaaaagaattgaaggatgcttaacaaggaaatcagtcaa |
708 |
Q |
| |
|
||| |||||||| || || | ||||| |||| | ||| ||| |||||||| ||||||| |||||||||||| |
|
|
| T |
19665 |
acccttgtatctgttactcaatgaagtgtccttcaaacgaacagaaggatgtttaacaaagaaatcagtcaa |
19594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 100; Significance: 5e-49; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 100; E-Value: 5e-49
Query Start/End: Original strand, 342 - 708
Target Start/End: Complemental strand, 22966193 - 22965826
Alignment:
| Q |
342 |
tgatgcttaatatcttccacatgttgatttgaaatgttaatatttaaacgcatctcgtcaacttccttggttacacgctgctgggaatccaatagctttt |
441 |
Q |
| |
|
|||||||||| |||||||||||||||| || |||||| || || |||| || | | |||||||| |||| || | |||| ||||||||| || |||| |
|
|
| T |
22966193 |
tgatgcttaagatcttccacatgttgacttaaaatgtctattttcaaacccaacacttcaacttctttggagacttgttgcttggaatccaacagttttt |
22966094 |
T |
|
| Q |
442 |
gcaatgcattttgagagaattgtaaatcaggaaacaaagcgcgcttttcaacacggtccaaccaatccttatcaaaaccacatttgcacacatctt-taa |
540 |
Q |
| |
|
||||||||| |||||||| || || ||| | ||||||||| || ||||||||| |||||||||||||||||||||||| | ||| || || | || |
|
|
| T |
22966093 |
gcaatgcatcttgagagacttttatatccgaaaacaaagcacgtctttcaacactatccaaccaatccttatcaaaaccaaagctgcgcaaattgtgtag |
22965994 |
T |
|
| Q |
541 |
taactcaacacattcagattggcttgaacctaacacatcgaacgcactatgggtttggaggaatttcaatagctcagctagacagttgtaggcataacct |
640 |
Q |
| |
|
|| || ||| ||||||| || |||||| |||||||||| | | ||||||||||||||||||||| ||||||||||||||||| |||| ||||||| |
|
|
| T |
22965993 |
tagcttaacgaattcagaatgacttgaagctaacacatctagcacactatgggtttggaggaattgtaatagctcagctagacaagtgtatgcataacac |
22965894 |
T |
|
| Q |
641 |
ttgtatctattgcttagtgaagcgtccgttaaaagaattgaaggatgcttaacaaggaaatcagtcaa |
708 |
Q |
| |
|
||||||||| | || ||||||| |||| ||||||||| ||| |||| |||||||| |||||||||||| |
|
|
| T |
22965893 |
ttgtatctagtactcagtgaagtgtcccttaaaagaactgatggatacttaacaaagaaatcagtcaa |
22965826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 342 - 672
Target Start/End: Complemental strand, 22401016 - 22400685
Alignment:
| Q |
342 |
tgatgcttaatatcttccacatgttgatttgaaatgttaatatttaaacgcatctcgtcaacttccttggttacacgctgctgggaatccaatagctttt |
441 |
Q |
| |
|
|||||||||| |||||||||||||||| || |||||| || || ||||||| | | |||||||| |||| || | |||| ||||||||| || |||| |
|
|
| T |
22401016 |
tgatgcttaagatcttccacatgttgacttaaaatgtctattttcaaacgcaacacttcaacttctttggagacttgttgcttggaatccaacagttttt |
22400917 |
T |
|
| Q |
442 |
gcaatgcattttgagagaattgtaaatcaggaaacaaagcgcgcttttcaacacggtccaaccaatccttatcaaaaccacatttgcacaca-tctttaa |
540 |
Q |
| |
|
||||||||| |||||||| || || ||| | ||||||||| || ||||||||| |||||||||||||||||||||||| | ||| || | | | || |
|
|
| T |
22400916 |
gcaatgcatcttgagagacttttatatccgaaaacaaagcacgtctttcaacactatccaaccaatccttatcaaaaccaaagctgcgcaaattgtgtag |
22400817 |
T |
|
| Q |
541 |
taactcaacacattcagattggcttgaacctaacacatcgaacgcactatgggtttggaggaatttcaatagctcagctagacagttgtaggcataacct |
640 |
Q |
| |
|
|| || ||| ||||||| || ||||||||||||||||| | | ||||||||||||||||||||| ||||| ||||||||||| |||| ||||||| |
|
|
| T |
22400816 |
tagcttaacgaattcagagtgacttgaacctaacacatctagcacactatgggtttggaggaattgtaatagatcagctagacaagtgtatgcataacac |
22400717 |
T |
|
| Q |
641 |
ttgtatctattgcttagtgaagcgtccgttaa |
672 |
Q |
| |
|
||||||||| | || ||||||| |||| |||| |
|
|
| T |
22400716 |
ttgtatctagtactcagtgaagtgtcccttaa |
22400685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 438 - 749
Target Start/End: Complemental strand, 8021601 - 8021290
Alignment:
| Q |
438 |
ttttgcaatgcattttgagagaattgtaaatcaggaaacaaagcgcgcttttcaacacggtccaaccaatccttatcaaaaccacatttgcacacatctt |
537 |
Q |
| |
|
||||||||||||| |||||||| ||| || || |||||||||| |||||||| | | |||||||| |||||||||||| | | || ||||||| |
|
|
| T |
8021601 |
ttttgcaatgcatcttgagagacttgcgaaccatgaaacaaagcacgcttttcgatatcatccaaccattccttatcaaaaggaaaactgtgtacatctt |
8021502 |
T |
|
| Q |
538 |
-taataactcaacacattcagattggcttgaacctaacacatcgaacgcactatgggtttggaggaatttcaatagctcagctagacagttgtaggcat- |
635 |
Q |
| |
|
||||||||| | | ||||||| ||||||||||||||||||| ||| ||||||| ||||| ||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
8021501 |
gtaataactcgataaattcagagaggcttgaacctaacacatccaacacactatgagtttgaaggaatttcaatagctcggctagacagttgtaggcata |
8021402 |
T |
|
| Q |
636 |
---aacctttgtatctattgcttagtgaagcgtccgttaaaagaattgaaggatgcttaacaaggaaatcagtcaagtcaacaaagacaagttatcagta |
732 |
Q |
| |
|
|||| ||||||| | || | ||||| || | ||| ||||| |||||||||||||||||||||||| |||||||| |||||| || ||| || |
|
|
| T |
8021401 |
accaacccttgtatcggctactcaatgaagtgtgccttagaagaaatgaaggatgcttaacaaggaaatc-----agtcaacagagacaatttctcaata |
8021307 |
T |
|
| Q |
733 |
gccaaatgattcttgga |
749 |
Q |
| |
|
|| |||||||||||||| |
|
|
| T |
8021306 |
gctaaatgattcttgga |
8021290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 342 - 708
Target Start/End: Complemental strand, 22792720 - 22792360
Alignment:
| Q |
342 |
tgatgcttaatatcttccacatgttgatttgaaatgttaatatttaaacgcatctcgtcaacttccttggttacacgctgctgggaatccaatagctttt |
441 |
Q |
| |
|
|||||||||| |||||||||||||||| || |||||| || || |||| || | | |||||||| |||| || | || | ||||||||| || |||| |
|
|
| T |
22792720 |
tgatgcttaagatcttccacatgttgacttaaaatgtctattttcaaacacaacacttcaacttctttggagacttgttgattggaatccaacagttttt |
22792621 |
T |
|
| Q |
442 |
gcaatgcattttgagagaattgtaaatcaggaaacaaagcgcgcttttcaacacggtccaaccaatccttatcaaaaccacatttgcacaca-tctttaa |
540 |
Q |
| |
|
||||||||| |||||||| || || ||| | ||||||||| || ||||||||| |||||||||||||||||||||||| | | | || | | | || |
|
|
| T |
22792620 |
gcaatgcatcttgagagacttttatatccgaaaacaaagcacgtctttcaacactatccaaccaatccttatcaaaaccaaagctacgcaaattgtgtag |
22792521 |
T |
|
| Q |
541 |
taactcaacacattcagattggcttgaacctaacacatcgaacgcactatgggtttggaggaatttcaatagctcagctagacagttgtaggcataacct |
640 |
Q |
| |
|
|| || || ||||||| || ||||||||||||||||| | | ||||||||||||||||||||| ||||||||||| ||| || |||||| | |
|
|
| T |
22792520 |
tagcttaatgaattcagagtgacttgaacctaacacatccagcacactatgggtttggaggaattgtaatagctcagc---aca---ctatgcataa-ca |
22792428 |
T |
|
| Q |
641 |
ttgtatctattgcttagtgaagcgtccgttaaaagaattgaaggatgcttaacaaggaaatcagtcaa |
708 |
Q |
| |
|
|||||||| | || ||||||| |||| ||||||||| ||| |||| |||||||| |||||||||||| |
|
|
| T |
22792427 |
ctgtatctagtactcagtgaagtgtcccttaaaagaactgatggatacttaacaaagaaatcagtcaa |
22792360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 167
Target Start/End: Original strand, 8781508 - 8781537
Alignment:
| Q |
138 |
ttgcaacctgtctgtttatcttttaggttt |
167 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
8781508 |
ttgcaacctgtctgtttatcttttaggttt |
8781537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0922 (Bit Score: 99; Significance: 2e-48; HSPs: 1)
Name: scaffold0922
Description:
Target: scaffold0922; HSP #1
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 438 - 745
Target Start/End: Complemental strand, 2503 - 2203
Alignment:
| Q |
438 |
ttttgcaatgcattttgagagaattgtaaatcaggaaacaaagcgcgcttttcaacacggtccaaccaatccttatcaaaaccacatttgcacacatctt |
537 |
Q |
| |
|
||||||| ||||||||||||| ||||||| |||||||||| ||| |||||||||||| |||||||| || ||||||||| | || | | || ||||| |
|
|
| T |
2503 |
ttttgcagcgcattttgagagacttgtaaaccaggaaacaaggcgagcttttcaacaccatccaaccattctttatcaaaaggaaatctacgcatatctt |
2404 |
T |
|
| Q |
538 |
-taataactcaacacattcagattggcttgaacctaacacatcgaacgcactatgggtttggaggaatttcaatagctcagctagacagttgtaggcata |
636 |
Q |
| |
|
||||| ||||||| ||||||| |||||||||||||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2403 |
gtaatagctcaacaaattcagaatggcttgaacctaacacatccaacaggtaatgcttttggaggaatttcaatagctcagctagacagttgtaggcata |
2304 |
T |
|
| Q |
637 |
acctttgtatctattgcttagtgaagcgtccgttaaaagaattgaaggatgcttaacaaggaaatcagtcaagtcaacaaagacaagttatcagtagcca |
736 |
Q |
| |
|
||| ||| |||| || || | ||||| |||| || |||| |||||||| |||||| |||||||| |||||||||||||||||| ||| |||||| |
|
|
| T |
2303 |
acccttgaatctgttactcaatgaagtgtccctt---agaactgaaggattcttaactaggaaatc-----agtcaacaaagacaagttctcaatagcca |
2212 |
T |
|
| Q |
737 |
aatgattct |
745 |
Q |
| |
|
||| ||||| |
|
|
| T |
2211 |
aataattct |
2203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 63; Significance: 6e-27; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 342 - 651
Target Start/End: Original strand, 8692289 - 8692599
Alignment:
| Q |
342 |
tgatgcttaatatcttccacatgttgatttgaaatgttaatatttaaacgcatctcgtcaacttccttggttacacgctgctgggaatccaatagctttt |
441 |
Q |
| |
|
|||||||||| ||| |||||||||||| || |||| | || || ||| ||| | | |||||||||||||| || | |||| ||||||||||| ||| |
|
|
| T |
8692289 |
tgatgcttaagatcctccacatgttgacttaaaatctctatcttcaaatgcaacacttcaacttccttggtaacctgttgcttggaatccaataatgttt |
8692388 |
T |
|
| Q |
442 |
gcaatgcattttgagagaattgtaaatcaggaaacaaagcgcgcttttcaacacggtccaaccaatccttatcaaaaccacatttgcacacatctt-taa |
540 |
Q |
| |
|
||| || | ||| || | ||||| ||||||||||| ||| || |||| |||| |||||||||||||||||||||||| | |||| | ||||| || |
|
|
| T |
8692389 |
gcatggcgtcttgcgatatttgtatatcaggaaacatagcccgtctttcgacactatccaaccaatccttatcaaaaccaaagttgcgcgcatctagtag |
8692488 |
T |
|
| Q |
541 |
taactcaacacattcagattggcttgaacctaacacatcgaacgcactatgggtttggaggaatttcaatagctcagctagacagttgtaggcataacct |
640 |
Q |
| |
|
|| ||| ||| ||||||| |||| ||||||||| ||||| || ||||||| |||| |||||||||||||||||||| || ||||||||||| |||| |
|
|
| T |
8692489 |
tagctccacaaattcagagtggcatgaacctaatacatccaagacactatgagtttcaaggaatttcaatagctcagccagtaagttgtaggcacaaccc |
8692588 |
T |
|
| Q |
641 |
ttgtatctatt |
651 |
Q |
| |
|
||| ||||||| |
|
|
| T |
8692589 |
ttgaatctatt |
8692599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 167
Target Start/End: Complemental strand, 22572482 - 22572453
Alignment:
| Q |
138 |
ttgcaacctgtctgtttatcttttaggttt |
167 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
22572482 |
ttgcaacctgtctgtttatcttttaggttt |
22572453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 233 - 298
Target Start/End: Complemental strand, 17087162 - 17087097
Alignment:
| Q |
233 |
ttatcagtgtggaggttggattgaattgaggggtgatgctggtgagtaaacattaagatggtcgat |
298 |
Q |
| |
|
|||||| ||||||| ||||||||| ||||||||||||||||||||||| | ||| ||||| ||||| |
|
|
| T |
17087162 |
ttatcaatgtggagcttggattgacttgaggggtgatgctggtgagtacatatttagatgatcgat |
17087097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1147 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold1147
Description:
Target: scaffold1147; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 438 - 601
Target Start/End: Complemental strand, 1037 - 873
Alignment:
| Q |
438 |
ttttgcaatgcattttgagagaattgtaaatcaggaaacaaagcgcgcttttcaacacggtccaaccaatccttatcaaaaccacatttgcacacatctt |
537 |
Q |
| |
|
|||||||||| || | |||||| ||||||| ||||||||||| | | ||||| |||| || |||| |||||| |||||| || || || |||||||| |
|
|
| T |
1037 |
ttttgcaatgtatctagagagacttgtaaactaggaaacaaagtgtgtttttcgacaccatctaaccgatccttgtcaaaagcaaatatgtgcacatctt |
938 |
T |
|
| Q |
538 |
taat-aactcaacacattcagattggcttgaacctaacacatcgaacgcactatgggtttggagg |
601 |
Q |
| |
|
|| |||||||| ||| ||| | |||||||||||||||||| ||| || ||||||||||||| |
|
|
| T |
937 |
ggattaactcaaccaatttagagttgcttgaacctaacacatccaacacatcatgggtttggagg |
873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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