View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5876-Insertion-5 (Length: 704)
Name: NF5876-Insertion-5
Description: NF5876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5876-Insertion-5 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 638; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 638; E-Value: 0
Query Start/End: Original strand, 9 - 704
Target Start/End: Original strand, 28093852 - 28094551
Alignment:
| Q |
9 |
caacatccatcaagtctatttggttaaagcacttttgtcacatttcatcatagatacgcattcaaccggagcaaatgtgaaggggattcaaaatataaac |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
28093852 |
caacatccatcaagtctatttggttaaagcacttttgtcacatttcatcatagatacgcattcaaccggagcaaatgtgaaggggattcaaaatataatc |
28093951 |
T |
|
| Q |
109 |
tt---aaatgtggtattgttgcattacaatattacataaagaggattttgatagatgtctaataatctatcaacattttattttgctttctgttaagcat |
205 |
Q |
| |
|
| | || | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28093952 |
tatcaacattttattttgttgcattacaatattacataaagaggattttgatagatgtctaataatctatcaacattttattttgctttctgttaagcat |
28094051 |
T |
|
| Q |
206 |
gaagagtgttagtgtggctaattttttcatggaatgtttaattgacccttttattctagtaacctctatttccaacaaatgcatgcatgcaagaataaat |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28094052 |
gaagagtgttagtgtggctaattttttcatggaatgtttaattgacccttttattctagtaacctctatttccaacaaatgcatgcatgcaagaataaat |
28094151 |
T |
|
| Q |
306 |
atatatgcacaaatatgacaccacatcgcaaattgttgcttatatatacacaaacaatcaaacacaatacataataattgattcatgctttaccctcaac |
405 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28094152 |
atatatgcacaaatatgacaccacatcgcaaactgttgcttatatatacacaaacaatcaaacacaatacataataattgattcatgctttaccctcaac |
28094251 |
T |
|
| Q |
406 |
ccttgcatgggtgagtccaacacatgcatcaacaaaatctaagtctataaaatccgtagaaaatatctgcaacttatcaccacaccctttagaaaagcac |
505 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28094252 |
ccttgcatgggtgagtccaacacatgcatcaacaaaatctaagtctataaaatccgtagaaaatatctgcaacttatcaccacaccctttagaaaagcac |
28094351 |
T |
|
| Q |
506 |
tgactaatgaagaatcttgcatatctatgaatgcgttctgtcacaggtttcacacataaaacagggttatcaggaacaggcgtaacagtattctcaactc |
605 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28094352 |
tgactaatgaagaatcttgcatatctatgaatgcgttctgtcacaggtttcacgcataaaacagggttatcaggaacaggcgtaacagtattctcaactc |
28094451 |
T |
|
| Q |
606 |
tataaaagtattttctagacacaacatgttcctgctggctc-aatacttcatattactctcaaactttgttaatggcaaatctgtgttaatccaattgtc |
704 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28094452 |
tataaaagtattttctagacacaacatgttcctgttggctcaaatacttcatattactctcaaactttgttaatggcaaatctgtgttaatccaattgtc |
28094551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 61; Significance: 8e-26; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 386 - 618
Target Start/End: Complemental strand, 26156525 - 26156293
Alignment:
| Q |
386 |
attcatgctttaccctcaacccttgcatgggtgagtccaacacatgcatcaacaaaatctaagtctataaaatccgtagaaaatatctgcaacttatcac |
485 |
Q |
| |
|
||||| ||||| || |||||||||||||| ||||||||||||||||||||||||||||| || |||||||| || ||||| | ||| | | |||| |
|
|
| T |
26156525 |
attcaggcttttccttcaacccttgcatgagtgagtccaacacatgcatcaacaaaatcctcatcaataaaatcggtggaaaagacctgaatcctatccg |
26156426 |
T |
|
| Q |
486 |
cacaccctttagaaaagcactgactaatgaagaatcttgcatatctatgaatgcgttctgtcacaggtttcacacataaaacagggttatcaggaacagg |
585 |
Q |
| |
|
|| | || |||| |||||||||| ||| |||| || ||||||| |||||||||| || |||||||||||||| |||||||||||||| | || || |
|
|
| T |
26156425 |
catatcccttagcaaagcactgagcaataaagagcctagcatatccatgaatgcgtctcgttacaggtttcacacacaaaacagggttatccgccactgg |
26156326 |
T |
|
| Q |
586 |
cgtaacagtattctcaactctataaaagtattt |
618 |
Q |
| |
|
||||| |||||||| || |||||||| ||||| |
|
|
| T |
26156325 |
agtaaccgtattctccaccctataaaaatattt |
26156293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 386 - 618
Target Start/End: Complemental strand, 26169823 - 26169591
Alignment:
| Q |
386 |
attcatgctttaccctcaacccttgcatgggtgagtccaacacatgcatcaacaaaatctaagtctataaaatccgtagaaaatatctgcaacttatcac |
485 |
Q |
| |
|
||||| ||||| || |||||||||||||| ||||||||||||||||||||||||||||| || |||||||| || ||||| | ||| | | |||| |
|
|
| T |
26169823 |
attcaggcttttccttcaacccttgcatgagtgagtccaacacatgcatcaacaaaatcctcatcaataaaatcggtggaaaagacctgaatcctatccg |
26169724 |
T |
|
| Q |
486 |
cacaccctttagaaaagcactgactaatgaagaatcttgcatatctatgaatgcgttctgtcacaggtttcacacataaaacagggttatcaggaacagg |
585 |
Q |
| |
|
|| | || |||| |||||||||| ||| |||| || ||||||| |||||||||| || |||||||||||||| |||||||||||||| | || || |
|
|
| T |
26169723 |
catatcccttagcaaagcactgagcaataaagagcctagcatatccatgaatgcgtctcgttacaggtttcacacacaaaacagggttatccgccactgg |
26169624 |
T |
|
| Q |
586 |
cgtaacagtattctcaactctataaaagtattt |
618 |
Q |
| |
|
||||| |||||||| || |||||||| ||||| |
|
|
| T |
26169623 |
agtaaccgtattctccaccctataaaaatattt |
26169591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 392 - 443
Target Start/End: Original strand, 55164544 - 55164595
Alignment:
| Q |
392 |
gctttaccctcaacccttgcatgggtgagtccaacacatgcatcaacaaaat |
443 |
Q |
| |
|
||||| || |||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
55164544 |
gcttttccttcaacccttgcatgagtgagtccaacacatgcatcaacaaaat |
55164595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University