View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5876-Insertion-6 (Length: 531)

Name: NF5876-Insertion-6
Description: NF5876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5876-Insertion-6
NF5876-Insertion-6
[»] chr7 (2 HSPs)
chr7 (253-531)||(39616225-39616503)
chr7 (9-192)||(39615981-39616164)
[»] chr5 (9 HSPs)
chr5 (385-531)||(1591107-1591253)
chr5 (40-183)||(1580821-1580964)
chr5 (40-183)||(1603851-1603994)
chr5 (21-183)||(1587321-1587483)
chr5 (41-183)||(1590760-1590902)
chr5 (261-377)||(1580663-1580782)
chr5 (261-377)||(1604033-1604152)
chr5 (261-338)||(1587202-1587282)
chr5 (261-361)||(1590941-1591044)
[»] chr3 (2 HSPs)
chr3 (385-531)||(19270902-19271048)
chr3 (21-154)||(19270323-19270456)


Alignment Details
Target: chr7 (Bit Score: 275; Significance: 1e-153; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 253 - 531
Target Start/End: Original strand, 39616225 - 39616503
Alignment:
Q  253 ggttccaccttcttcgtggtctttggtttcgttcttctttccgcataagacatgctaacttcatcacatgggcgacaccgtttcttggtattcgctactt 352  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  39616225 ggttccaccttcttcgtggtctttggtttcgttcttctttccgcataagacatgctaacttcatcacatgggcgacaccttttcttggtattcgctactt 39616324  T
Q  353 ctccttccactgtgttttgtggaatttttcgagtttcttggagaacaagttgactgtgtttctttatttgtgttaactcttcttcagaataaaattgtgg 452  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39616325 ctccttccactgtgttttgtggaatttttcgagtttcttggagaacaagttgactgtgtttctttatttgtgttaactcttcttcagaataaaattgtgg 39616424  T
Q  453 agcacgtatagctatcacgcattgccaagcaaagttatgggaaaggttgagtggcgccgtttttgctttttccatgtat 531  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39616425 agcacgtatagctatcacgcattgccaagcaaagttatgggaaaggttgagtggcgccgtttttgctttttccatgtat 39616503  T

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Target: chr7; HSP #2
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 9 - 192
Target Start/End: Original strand, 39615981 - 39616164
Alignment:
Q  9 cttttctgtcttggtgagaaaaccaagttcgtcttctttaagtggcattaaaagacgactttggccttcatcgatatctgacgcaaacaatttctttgac 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39615981 cttttctgtcttggtgagaaaaccaagttcgtcttctttaagtggcattaaaagacgactttggccttcatcgatatctgacgcaaacaatttctttgac 39616080  T
Q  109 atgatatatctgatatcagtgccattcaactccttgatcttgttcttgacattaataggtaatattggcggaggtaaagccaaa 192  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39616081 atgatatatctgatatcagtgccattcaactccttgatcttgttcttgacattaataggtaatattggcggaggtaaagccaaa 39616164  T

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Target: chr5 (Bit Score: 71; Significance: 6e-32; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 385 - 531
Target Start/End: Original strand, 1591107 - 1591253
Alignment:
Q  385 gtttcttggagaacaagttgactgtgtttctttatttgtgttaactcttcttcagaataaaattgtggagcacgtatagctatcacgcattgccaagcaa 484  Q
    ||||||||||||||| |||||  | |||||||||||| || ||||||||||| || |||||||||||||||| || ||||||| ||||||||||||| ||    
T  1591107 gtttcttggagaacacgttgatagagtttctttatttctgctaactcttcttgagtataaaattgtggagcaagtgtagctatgacgcattgccaagtaa 1591206  T
Q  485 agttatgggaaaggttgagtggcgccgtttttgctttttccatgtat 531  Q
    | |||||| || |||||| |||||| ||||| ||| |||||||||||    
T  1591207 aattatggtaagggttgaatggcgctgttttcgctatttccatgtat 1591253  T

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Target: chr5; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 40 - 183
Target Start/End: Complemental strand, 1580964 - 1580821
Alignment:
Q  40 tcttctttaagtggcattaaaagacgactttggccttcatcgatatctgacgcaaacaatttctttgacatgatatatctgatatcagtgccattcaact 139  Q
    ||||||||||||| |||||||||||||||||||  || |  || ||||||  ||||||||| |||  ||||||||| | |||||||||||||||||||||    
T  1580964 tcttctttaagtgacattaaaagacgactttggtgtttactgagatctgaatcaaacaattccttacacatgatatgtttgatatcagtgccattcaact 1580865  T
Q  140 ccttgatcttgttcttgacattaataggtaatattggcggaggt 183  Q
    | ||||||||| ||| ||||| |||||| |||||||||||||||    
T  1580864 ctttgatcttgatctcgacatcaataggcaatattggcggaggt 1580821  T

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Target: chr5; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 40 - 183
Target Start/End: Original strand, 1603851 - 1603994
Alignment:
Q  40 tcttctttaagtggcattaaaagacgactttggccttcatcgatatctgacgcaaacaatttctttgacatgatatatctgatatcagtgccattcaact 139  Q
    ||||||||||||| |||||||||||||||||||  || |  || ||||||  ||||||||| |||  ||||||||| | |||||||||||||||||||||    
T  1603851 tcttctttaagtgacattaaaagacgactttggtgtttactgagatctgaatcaaacaattccttacacatgatatgtttgatatcagtgccattcaact 1603950  T
Q  140 ccttgatcttgttcttgacattaataggtaatattggcggaggt 183  Q
    | ||||||||| ||| ||||| |||||| |||||||||||||||    
T  1603951 ctttgatcttgatctcgacatcaataggcaatattggcggaggt 1603994  T

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Target: chr5; HSP #4
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 21 - 183
Target Start/End: Complemental strand, 1587483 - 1587321
Alignment:
Q  21 ggtgagaaaaccaagttcgtcttctttaagtggcattaaaagacgactttggccttcatcgatatctgacgcaaacaatttctttgacatgatatatctg 120  Q
    |||||||||| ||| || | |||||||||| ||||||||||||||| ||||| | ||   || |||||||||| ||||||| ||  ||||||||| | ||    
T  1587483 ggtgagaaaatcaactttgacttctttaagcggcattaaaagacgattttggtcatccctgagatctgacgcagacaattttttacacatgatatttttg 1587384  T
Q  121 atatcagtgccattcaactccttgatcttgttcttgacattaataggtaatattggcggaggt 183  Q
    |||||||||||||| ||||| |||||||||||||  || | |||||| |||||||| ||||||    
T  1587383 atatcagtgccattaaactctttgatcttgttctcaacgtgaataggcaatattggtggaggt 1587321  T

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Target: chr5; HSP #5
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 41 - 183
Target Start/End: Original strand, 1590760 - 1590902
Alignment:
Q  41 cttctttaagtggcattaaaagacgactttggccttcatcgatatctgacgcaaacaatttctttgacatgatatatctgatatcagtgccattcaactc 140  Q
    |||||||||| ||||||||||||||| ||||| | ||   || ||| |||||| ||||||| ||  ||||||||| | |||||||||||||||| |||||    
T  1590760 cttctttaagcggcattaaaagacgattttggtcatccctgagatccgacgcagacaattttttacacatgatatttttgatatcagtgccattaaactc 1590859  T
Q  141 cttgatcttgttcttgacattaataggtaatattggcggaggt 183  Q
     |||||||||||||  || | |||||| |||||||| ||||||    
T  1590860 tttgatcttgttctcaacgtgaataggcaatattggtggaggt 1590902  T

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Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 261 - 377
Target Start/End: Complemental strand, 1580782 - 1580663
Alignment:
Q  261 cttcttcgtggtctttggtttcgttcttctttccgc---ataagacatgctaacttcatcacatgggcgacaccgtttcttggtattcgctacttctcct 357  Q
    |||||||||| |||||||||||  |||||||| |||   || || ||||||| ||||||||| || |||||||| ||||||  ||||| || ||||||||    
T  1580782 cttcttcgtgctctttggtttcactcttcttttcgccttatcagccatgctaccttcatcacttgagcgacaccttttcttcttattcactgcttctcct 1580683  T
Q  358 tccactgtgttttgtggaat 377  Q
    | || |||| ||||||||||    
T  1580682 ttcattgtgctttgtggaat 1580663  T

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Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 261 - 377
Target Start/End: Original strand, 1604033 - 1604152
Alignment:
Q  261 cttcttcgtggtctttggtttcgttcttctttccgc---ataagacatgctaacttcatcacatgggcgacaccgtttcttggtattcgctacttctcct 357  Q
    |||||||||| |||||||||||  |||||||| |||   || || ||||||| ||||||||| || |||||||| ||||||  ||||| || ||||||||    
T  1604033 cttcttcgtgctctttggtttcactcttcttttcgccttatcagccatgctaccttcatcacttgagcgacaccttttcttcttattcactgcttctcct 1604132  T
Q  358 tccactgtgttttgtggaat 377  Q
    | || |||| ||||||||||    
T  1604133 ttcattgtgctttgtggaat 1604152  T

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Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 261 - 338
Target Start/End: Complemental strand, 1587282 - 1587202
Alignment:
Q  261 cttcttcgtggtctttggtttcgttcttctttccgcataagaca---tgctaacttcatcacatgggcgacaccgtttctt 338  Q
    |||||||||||||||||||||   |||||||||| |||||||||   ||||| ||||||||| || |||||||| ||||||    
T  1587282 cttcttcgtggtctttggtttaactcttctttccacataagacatgctgctaccttcatcacttgagcgacaccttttctt 1587202  T

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Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 261 - 361
Target Start/End: Original strand, 1590941 - 1591044
Alignment:
Q  261 cttcttcgtggtctttggtttcgttcttctttccgcataagaca---tgctaacttcatcacatgggcgacaccgtttcttggtattcgctacttctcct 357  Q
    |||||||||||||||||||||    ||||||||||||||| |||   ||||| ||||||||| || |||||||| ||||||  ||||| | || ||||||    
T  1590941 cttcttcgtggtctttggtttaacacttctttccgcataaaacatgctgctaccttcatcacttgagcgacaccttttctttttattcacgacatctcct 1591040  T
Q  358 tcca 361  Q
    ||||    
T  1591041 tcca 1591044  T

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Target: chr3 (Bit Score: 67; Significance: 2e-29; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 385 - 531
Target Start/End: Original strand, 19270902 - 19271048
Alignment:
Q  385 gtttcttggagaacaagttgactgtgtttctttatttgtgttaactcttcttcagaataaaattgtggagcacgtatagctatcacgcattgccaagcaa 484  Q
    ||||||||||||||| |||||  | |||||||||||||||  |||||||||| || ||||||||| |||||| || ||||||| ||||||||||||||||    
T  19270902 gtttcttggagaacacgttgatagagtttctttatttgtgccaactcttcttgagtataaaattggggagcaagtgtagctatgacgcattgccaagcaa 19271001  T
Q  485 agttatgggaaaggttgagtggcgccgtttttgctttttccatgtat 531  Q
    | ||||||  | |||||| |||||| ||||| ||| |||||||||||    
T  19271002 aattatggtgagggttgaatggcgctgttttcgctatttccatgtat 19271048  T

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Target: chr3; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 21 - 154
Target Start/End: Original strand, 19270323 - 19270456
Alignment:
Q  21 ggtgagaaaaccaagttcgtcttctttaagtggcattaaaagacgactttggccttcatcgatatctgacgcaaacaatttctttgacatgatatatctg 120  Q
    |||||||||| ||| || | |||||||||  | |||||| |||||| ||||| | || | || || ||| ||||||||||| ||   |||||||||| ||    
T  19270323 ggtgagaaaatcaactttgacttctttaatcgacattaatagacgattttggtcatctttgagatttgatgcaaacaattttttacccatgatatatttg 19270422  T
Q  121 atatcagtgccattcaactccttgatcttgttct 154  Q
    |||||||||||||||||||| |||||||||||||    
T  19270423 atatcagtgccattcaactctttgatcttgttct 19270456  T

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