View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5876-Insertion-7 (Length: 511)
Name: NF5876-Insertion-7
Description: NF5876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5876-Insertion-7 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 494; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 494; E-Value: 0
Query Start/End: Original strand, 2 - 511
Target Start/End: Complemental strand, 51863669 - 51863160
Alignment:
| Q |
2 |
atcatcaagtatgtcattgacctaatgttgttggaagtggagggggtaaagataaggcagagatggcagttttgcagcttctgaagaaatcaaacttttt |
101 |
Q |
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| T |
51863669 |
atcatcaagtatgtcattgatctaatgttgttggaagtggagggagtaaagataaggcagagatggcagttttgcagcttctgaagaaatcaaacttttt |
51863570 |
T |
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| Q |
102 |
taaaaaataattgaggaagaggagaattattattaattaaagcgacactaacggccattctacaatcgtctccgaggggggtatcaactttgtccattga |
201 |
Q |
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| T |
51863569 |
taaaaaataattgaggaagaggagatttattattaattaaagcgacactaacggccattctacaatcgtctccgaggggggtatcaactttgtccattga |
51863470 |
T |
|
| Q |
202 |
ggttatgaggtcagattcttagccctgagctgacacctcacggaccgagccaccgaggaaatgaaacttcaaggcaataagcaaaatattacataccaga |
301 |
Q |
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| T |
51863469 |
ggttatgaggtcagattcttagccctgagctgacacctcacggaccgagccaccgaggaaatgaaacttcaaggcaataagcaaaatattacataccaga |
51863370 |
T |
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| Q |
302 |
tagtgaagtagtgtaggccttactcttccttatacaaaaggctcaaaataagtaatgtgtgcacaccattcaactaaatcaatgcaagcaaactatatat |
401 |
Q |
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| T |
51863369 |
tagtgaagtagtgtaggccttactcttccttatacaaaaggctcaaaataagtaatgtgtgcacaccattcaactaaatcaatgcaagcaaactatatat |
51863270 |
T |
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| Q |
402 |
atacataacaaaccaaggaacctcactttgcaattcaggaataatgaagtatatttggtttgttaaatgccttaacatatacatatgaatgtgagtatgc |
501 |
Q |
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| T |
51863269 |
atacataacaaaccaaggaacctcactttgcaattcagggataatgaagtatatttggtttgttaaatgccttaacatatacatatgaatgtgagtatgc |
51863170 |
T |
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| Q |
502 |
atgcttacaa |
511 |
Q |
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| T |
51863169 |
atgcttacaa |
51863160 |
T |
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Back To:
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Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 396 - 469
Target Start/End: Original strand, 43180501 - 43180574
Alignment:
| Q |
396 |
atatatatacataacaaaccaaggaacctcactttgcaattcaggaataatgaagtatatttggtttgttaaat |
469 |
Q |
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| T |
43180501 |
atatatacacttaacaaaccaaggaacctcactttgcaattcaggggtaatcaagtatatttggttttttaaat |
43180574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 104 - 152
Target Start/End: Original strand, 13258370 - 13258418
Alignment:
| Q |
104 |
aaaaataattgaggaagaggagaattattattaattaaagcgacactaa |
152 |
Q |
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| T |
13258370 |
aaaaaaaattggggaagtggaaaattattattaattaaagtgacactaa |
13258418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 110 - 171
Target Start/End: Complemental strand, 48703195 - 48703134
Alignment:
| Q |
110 |
aattgaggaagaggagaattattattaattaaagcgacactaacggccattctacaatcgtc |
171 |
Q |
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| T |
48703195 |
aattgaggaaaagggaaattattattaattaaagtgacactaataaccattttacaatcgtc |
48703134 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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