View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5876-Insertion-8 (Length: 410)
Name: NF5876-Insertion-8
Description: NF5876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5876-Insertion-8 |
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| [»] chr6 (5 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 176; Significance: 1e-94; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 215 - 410
Target Start/End: Complemental strand, 17167014 - 17166820
Alignment:
| Q |
215 |
gatgttgattaaatatttatttctcaatatattttttcaatgcacactaattattgattgattctaatgtcttgcaagtgttcgtgtctctaacacactt |
314 |
Q |
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| T |
17167014 |
gatgttgattaaatatttatttgtcaatatattttttcaatgctcactaattattgattgattctaatgtcttgcaagtgttcgtgtctctaatacactt |
17166915 |
T |
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| Q |
315 |
ggcatgtcacatccaagagcagccaaatactctttcttggtggcaatatctcagtccctttctccttggaatcattttcatgactgttattttctt |
410 |
Q |
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| T |
17166914 |
ggcatgtcacatccaagagcagccaaatactctttcttggtggcaatatctcagtccc-ttctccttggaatcattttcatgactgttattttctt |
17166820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 78 - 183
Target Start/End: Complemental strand, 17167151 - 17167046
Alignment:
| Q |
78 |
ccaaaagtcttggatatttgtactggagagcgagttcacctctccacggcacattccaaaaactcgtattctcaccattccccacttttcaaacttttat |
177 |
Q |
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| T |
17167151 |
ccaaaagtcttggatatttgtaccggagagcgagttcacctctccacggcacattccaaaaactcgtattctcaccattccccacttttcaaacttttat |
17167052 |
T |
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| Q |
178 |
tcagcc |
183 |
Q |
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| T |
17167051 |
tcagcc |
17167046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 271 - 410
Target Start/End: Complemental strand, 17135531 - 17135393
Alignment:
| Q |
271 |
attgattctaatgtcttgcaagtgttcgtgtctctaacacacttggcatgtcacatccaagagcagccaaatactctttcttggtggcaatatctcagtc |
370 |
Q |
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| T |
17135531 |
attgattctaatgtcttgcaagtgttcgtgtctctcatacacttggaatgtcgcatccaagagcatccaaatactctttcttggtagcaatgtctcagtc |
17135432 |
T |
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| Q |
371 |
cctttctccttggaatcattttcatgactgttattttctt |
410 |
Q |
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| T |
17135431 |
tc-ttctcattggaatcattttcatgactgttattttctt |
17135393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 272 - 410
Target Start/End: Complemental strand, 17149311 - 17149174
Alignment:
| Q |
272 |
ttgattctaatgtcttgcaagtgttcgtgtctctaacacacttggcatgtcacatccaagagcagccaaatactctttcttggtggcaatatctcagtcc |
371 |
Q |
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| T |
17149311 |
ttgattctaatgccttgcaagtgttcgtgtctctaatacacttggcatgtcacatccaagagcatccaagtactctttcttggtgacaatgtctcagtct |
17149212 |
T |
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| Q |
372 |
ctttctccttggaatcattttcatgactgttattttctt |
410 |
Q |
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| T |
17149211 |
c-ttctcattggaaccattttcatgactgttattttctt |
17149174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 9 - 74
Target Start/End: Complemental strand, 17167323 - 17167258
Alignment:
| Q |
9 |
aaacatcctccacttggctccccctaatatcctccaaatcctccaacaactctaccaacatctcat |
74 |
Q |
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| T |
17167323 |
aaacatcctccacttggctctccctaatatcctccaaatcctccaacaactctaccaacatctcat |
17167258 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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