View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5876_high_11 (Length: 487)
Name: NF5876_high_11
Description: NF5876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5876_high_11 |
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Alignment Details
Target: chr2 (Bit Score: 436; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 18 - 477
Target Start/End: Original strand, 43375918 - 43376377
Alignment:
| Q |
18 |
gatttccagcctctaccaatgggagagttaggattatcatcttcacccaaaactctaacatacaacaacccaaacttctcaagcttctccacaaattccg |
117 |
Q |
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| T |
43375918 |
gatttccagcctctaccaatgggagagttaggattatcatcttcacccaaaactctaacatacaacaacccaaacttctcaagcttctccacaaattccg |
43376017 |
T |
|
| Q |
118 |
gataacgatccttcatcctatcgtaaacaacatgactaagaacaatcggcgtttcaccaccattcttcggctcaacttcacagaaaaagaacaatttcga |
217 |
Q |
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| T |
43376018 |
gataacgatccttcatcctatcgtaaacaacatgactaagaacaataggcgtttcaccaccattcttcggctcaatttcacagaaaaagaacaatttcga |
43376117 |
T |
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| Q |
218 |
cggaaattccggaacctgagccatttcatgatggaaagggattttctgatcaggtggagattcattggcagtgaagacacggccgacgacgttggtgcgt |
317 |
Q |
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| T |
43376118 |
cggaaattccggaacctgagccatttcatgatggaaagggattttctgatcaggtggagattcattggcagtgaagacacggccgacgacgttggtgcgt |
43376217 |
T |
|
| Q |
318 |
ggtgcagcgccgccgatgtaggggagttcggcgtaatcaaaggcttcgacgagggagttgaaatgggaggcggtttggagagagaagttacggaggagga |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43376218 |
ggtgcagcgccgccgatgtaggggagttcggcgtaatcaaaggcttccacgagggagttgaaatgggaggcggtttggagagagaagttacggaggagga |
43376317 |
T |
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| Q |
418 |
tcgcgccggagtggtggaggagggattcgagatagggtttgtgggttttgattgtctgtg |
477 |
Q |
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|||||||||||||||||||||||||||||| ||| |||||||||||||||||||| |||| |
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| T |
43376318 |
tcgcgccggagtggtggaggagggattcgaaatacggtttgtgggttttgattgtgtgtg |
43376377 |
T |
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