View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5876_high_12 (Length: 458)
Name: NF5876_high_12
Description: NF5876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5876_high_12 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 337; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 19 - 441
Target Start/End: Original strand, 35354651 - 35355073
Alignment:
| Q |
19 |
actattggctacatagagcacttcatcaccattatctatactctcgttatcattctcatcaccattcttcaattgttactgagcctatcacttgtatgaa |
118 |
Q |
| |
|
|||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35354651 |
actattggcttcatagagcacttcatcatcattatctatactctcgttatcactctcatcaccattcttcaattgttactgagcctatcacttgtatgaa |
35354750 |
T |
|
| Q |
119 |
cnnnnnnnnnnnnnnnnnngcatgcttgatttgtgagtgtccaaattttggtgtcaaaataacacaactttcttatgtattttgacagctgtgacacacc |
218 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35354751 |
ctttttttctttcatttttgcatgcttgatttgtgagtgtccaaattttggtgtcaaaataacacaactttcttatgtattttgacagctgtgacacacc |
35354850 |
T |
|
| Q |
219 |
catttgcggagcatttgtcatattttacactttttgctataccaatgttgacaacattgttcatcaaaaaatcttctgtggctgcactatttggctatat |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | |
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| T |
35354851 |
catttgcggagcatttgtcatattttacactttttgctataccaatgttgacaacattgttcatcaaaaaatcttctgtggctgcactatatggctatgt |
35354950 |
T |
|
| Q |
319 |
attttacattgatttcatgaacaacatgggtcattgcaactttgagttctttcctaagaaactcctctcttactttcccattttgaagtatctctcatac |
418 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35354951 |
ctttttcattgatttcatgaacaacatgggtcattgcaactttgagttcattcctaagaaactcctctcttactttcccattttgaagtatctctcatac |
35355050 |
T |
|
| Q |
419 |
acaccatcgtaagttcaacaatg |
441 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
35355051 |
acaccatcgtaagttcaacaatg |
35355073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 199 - 433
Target Start/End: Original strand, 35380837 - 35381071
Alignment:
| Q |
199 |
tttgacagctgtgacacacccatttgcggagcatttgtcatattttacactttttgctataccaatgttgacaacattgttcatcaaaaaatcttctgtg |
298 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| ||| |
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|
| T |
35380837 |
tttgacagctgtcgcacacccatttgcggagcatttgtcatattttacactttttgctatcccaatgttgacaacattgttcatcaataaatcttccgtg |
35380936 |
T |
|
| Q |
299 |
gctgcactatttggctatatattttacattgatttcatgaacaacatgggtcattgcaactttgagttctttcctaagaaactcctctcttactttccca |
398 |
Q |
| |
|
|||||| | | ||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35380937 |
gctgcattgtatggttatatattttacattgatttcatgaacaatatgggtcattgcaactttgagttctttcctaagaaactcctctcttactttccca |
35381036 |
T |
|
| Q |
399 |
ttttgaagtatctctcatacacaccatcgtaagtt |
433 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| |
|
|
| T |
35381037 |
ttttaaagtatctctcatacacaccatcgtaagtt |
35381071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 202 - 433
Target Start/End: Original strand, 35370278 - 35370509
Alignment:
| Q |
202 |
gacagctgtgacacacccatttgcggagcatttgtcatattttacactttttgctataccaatgttgacaacattgttcatcaaaaaatcttctgtggct |
301 |
Q |
| |
|
|||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |
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|
| T |
35370278 |
gacagctgtggcacacccatttgccgagcatttgtcatattttacactttttgctataccaatgttaacaacattgttcatcaaaaaatcatctgtggct |
35370377 |
T |
|
| Q |
302 |
gcactatttggctatatattttacattgatttcatgaacaacatgggtcattgcaactttgagttctttcctaagaaactcctctcttactttcccattt |
401 |
Q |
| |
|
||||||| ||||||| | |||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| |||| ||||||||| | |
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|
| T |
35370378 |
gcactatatggctatgtctttttcattgatttcatgaacaatatgggtcattgcaactttgagttctttcctaagaagctcttctcatactttccccaat |
35370477 |
T |
|
| Q |
402 |
tgaagtatctctcatacacaccatcgtaagtt |
433 |
Q |
| |
|
||||||||||||| |||||||||||||||||| |
|
|
| T |
35370478 |
tgaagtatctctcttacacaccatcgtaagtt |
35370509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 19 - 119
Target Start/End: Original strand, 35379155 - 35379255
Alignment:
| Q |
19 |
actattggctacatagagcacttcatcaccattatctatactctcgttatcattctcatcaccattcttcaattgttactgagcctatcacttgtatgaa |
118 |
Q |
| |
|
|||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
35379155 |
actattggcttcatagagcacttcatcatcattatctatactctcgttatcattctcaccatcattcttcaattgtcactgagcctatcacttgtatgaa |
35379254 |
T |
|
| Q |
119 |
c |
119 |
Q |
| |
|
| |
|
|
| T |
35379255 |
c |
35379255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 19 - 119
Target Start/End: Original strand, 35369796 - 35369896
Alignment:
| Q |
19 |
actattggctacatagagcacttcatcaccattatctatactctcgttatcattctcatcaccattcttcaattgttactgagcctatcacttgtatgaa |
118 |
Q |
| |
|
|||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| || |||||||||||||| ||||||||| ||||||||||||| |
|
|
| T |
35369796 |
actattggcttcatagagcacttcatcatcattatctatactctcgttatcattctcaccatcattcttcaattgtcactgagcctgtcacttgtatgaa |
35369895 |
T |
|
| Q |
119 |
c |
119 |
Q |
| |
|
| |
|
|
| T |
35369896 |
c |
35369896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 117; Significance: 2e-59; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 201 - 433
Target Start/End: Original strand, 19684483 - 19684715
Alignment:
| Q |
201 |
tgacagctgtgacacacccatttgcggagcatttgtcatattttacactttttgctataccaatgttgacaacattgttcatcaaaaaatcttctgtggc |
300 |
Q |
| |
|
||||||| |||||||| |||||||| ||| ||| ||||||| ||||||||| ||||||||||||||||||||||||||| |||||||| ||||| |
|
|
| T |
19684483 |
tgacagcggtgacacatccatttgctgagatgttggcatatttcacactttttcttataccaatgttgacaacattgttcatgaaaaaatcgagtgtggt |
19684582 |
T |
|
| Q |
301 |
tgcactatttggctatatattttacattgatttcatgaacaacatgggtcattgcaactttgagttctttcctaagaaactcctctcttactttcccatt |
400 |
Q |
| |
|
|||| | | ||| ||||| |||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |||| ||||||||| |
|
|
| T |
19684583 |
tgcattgtatggttatatcttttacatcgattttatgaacaacatgggtcattgcaattttgagttctttcctaagaaactcttctcctactttccccaa |
19684682 |
T |
|
| Q |
401 |
ttgaagtatctctcatacacaccatcgtaagtt |
433 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| |
|
|
| T |
19684683 |
ttgaagtatctcacatacacaccatcgtaagtt |
19684715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 201 - 433
Target Start/End: Complemental strand, 19630344 - 19630111
Alignment:
| Q |
201 |
tgacagctgtgacacacccatttgcggagcatttgtcatattttacactttttgctataccaatgttga-caacattgttcatcaaaaaatcttctgtgg |
299 |
Q |
| |
|
|||||||||||| |||||||||||| ||| ||| ||||||| ||||||||| ||| ||||| |||| ||||| ||||| | |||||||| ||| | | |
|
|
| T |
19630344 |
tgacagctgtgatacacccatttgctgagatattggcatatttcacacttttttttatcccaatattgagcaacaatgttcgtaaaaaaatcgtctattg |
19630245 |
T |
|
| Q |
300 |
ctgcactatttggctatatattttacattgatttcatgaacaacatgggtcattgcaactttgagttctttcctaagaaactcctctcttactttcccat |
399 |
Q |
| |
|
|||| | | ||| ||||| |||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |||| ||||||||| | |
|
|
| T |
19630244 |
ctgcggtgtatggttatatcttttacatcgattttatgaacaacatgggtcattgcaattttgagttctttcctaagaaactcttctcctactttcccct |
19630145 |
T |
|
| Q |
400 |
tttgaagtatctctcatacacaccatcgtaagtt |
433 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| |
|
|
| T |
19630144 |
attgaagtatctctcgtacacaccatcgtaagtt |
19630111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 19 - 119
Target Start/End: Complemental strand, 19630580 - 19630480
Alignment:
| Q |
19 |
actattggctacatagagcacttcatcaccattatctatactctcgttatcattctcatcaccattcttcaattgttactgagcctatcacttgtatgaa |
118 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||| || |||||||||||||||||||| |
|
|
| T |
19630580 |
actattggctacatagagcacttcatcatcattatctatactctcgttaccattctcatcatcattcttcaattgtcaccgagcctatcacttgtatgaa |
19630481 |
T |
|
| Q |
119 |
c |
119 |
Q |
| |
|
| |
|
|
| T |
19630480 |
c |
19630480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 19 - 119
Target Start/End: Original strand, 19684217 - 19684317
Alignment:
| Q |
19 |
actattggctacatagagcacttcatcaccattatctatactctcgttatcattctcatcaccattcttcaattgttactgagcctatcacttgtatgaa |
118 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||| || |||||||||||||| ||||| ||||||||| ||||||| |
|
|
| T |
19684217 |
actattggctacatagagcacttcatcatcattatctatattctcgttaccattctcaccatcattcttcaattgtcactgaacctatcactggtatgaa |
19684316 |
T |
|
| Q |
119 |
c |
119 |
Q |
| |
|
| |
|
|
| T |
19684317 |
c |
19684317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 19 - 97
Target Start/End: Complemental strand, 2258538 - 2258460
Alignment:
| Q |
19 |
actattggctacatagagcacttcatcaccattatctatactctcgttatcattctcatcaccattcttcaattgttac |
97 |
Q |
| |
|
|||||||| |||| |||||||||||||| |||| || || ||| | |||||||||||||| |||||||| |||||||| |
|
|
| T |
2258538 |
actattggttacacagagcacttcatcatcatttcctctattctagatatcattctcatcatcattcttccattgttac |
2258460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 21 - 97
Target Start/End: Complemental strand, 2280526 - 2280450
Alignment:
| Q |
21 |
tattggctacatagagcacttcatcaccattatctatactctcgttatcattctcatcaccattcttcaattgttac |
97 |
Q |
| |
|
|||||| |||| |||||||||||||| |||| || || ||| | |||||||||||||| |||||||| |||||||| |
|
|
| T |
2280526 |
tattggttacacagagcacttcatcatcatttcctctattctagatatcattctcatcatcattcttccattgttac |
2280450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 322 - 379
Target Start/End: Original strand, 2251396 - 2251453
Alignment:
| Q |
322 |
ttacattgatttcatgaacaacatgggtcattgcaactttgagttctttcctaagaaa |
379 |
Q |
| |
|
|||||||||||||||||| || ||||||| || || ||||||||| ||||||||||| |
|
|
| T |
2251396 |
ttacattgatttcatgaataatttgggtcactgtaattttgagttcattcctaagaaa |
2251453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 322 - 379
Target Start/End: Complemental strand, 2256801 - 2256744
Alignment:
| Q |
322 |
ttacattgatttcatgaacaacatgggtcattgcaactttgagttctttcctaagaaa |
379 |
Q |
| |
|
|||||||||||||||||| || ||||||| || || ||||||||| ||||||||||| |
|
|
| T |
2256801 |
ttacattgatttcatgaataatttgggtcactgtaattttgagttcattcctaagaaa |
2256744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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