View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5876_high_18 (Length: 427)
Name: NF5876_high_18
Description: NF5876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5876_high_18 |
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Alignment Details
Target: chr3 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 23 - 410
Target Start/End: Complemental strand, 36364287 - 36363900
Alignment:
| Q |
23 |
attacaaagcaatgaataaatcactgagttcagctcagccacttcccggcgccggaacgtcacggtaactcttcaaccccgccacggtaaacggaacatc |
122 |
Q |
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| T |
36364287 |
attacaaagcaatgaataaatcactcagttcagctcagccacttcccggcgccggaacgtcacggtaactcttcaaccccgccacggtaaacggaacatc |
36364188 |
T |
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| Q |
123 |
ataaactttcttcatatcaggataaaacatcccaaaattcctctccgaagtaggtcccactttcccattctcattaaaaagtgcaaacaaataaacggtc |
222 |
Q |
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| T |
36364187 |
ataaactttcttcatatcaggataaaacatcccaaaattcctctccgaagtaagtcccactttcccattctcattaaaaagtgcaaacaaataaacggtc |
36364088 |
T |
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| Q |
223 |
agattcgcattcggtcttaaaggggtcccaccgttattaagaatcttcttaacaagattaccgttgtacgcagcagcgttctgtggggatgcacccacct |
322 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36364087 |
agattcgcattcggtcttaaaggggtcccaccgttgttaagaatcttcttaacaagattaccgttgtacgcagcagcgttctgtggggatgcacccacct |
36363988 |
T |
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| Q |
323 |
cattactatcacctttcgaaggccaacccgtttcactgacaaccactctaacgtcgtcgtattgaagcacgttaagcgctgcaaaaac |
410 |
Q |
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| T |
36363987 |
cattactatcacctttcgaaggccaacccgtttcactgacaaccactctaacgtcgtcgtattgaagcacgttaagcgctgcaaaaac |
36363900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 313 - 356
Target Start/End: Original strand, 36986010 - 36986053
Alignment:
| Q |
313 |
gcacccacctcattactatcacctttcgaaggccaacccgtttc |
356 |
Q |
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| T |
36986010 |
gcacccacttcattaccatcaccttttgaaggccaacccgtttc |
36986053 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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