View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5876_high_2 (Length: 735)
Name: NF5876_high_2
Description: NF5876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5876_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 654; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 654; E-Value: 0
Query Start/End: Original strand, 17 - 717
Target Start/End: Complemental strand, 28094555 - 28093852
Alignment:
| Q |
17 |
aagggacaattggattaacacagatttgccattaacaaagtttgagagtaatatgaagtatttgagccagcaggaacatgttgtgtctagaaaatacttt |
116 |
Q |
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| T |
28094555 |
aagggacaattggattaacacagatttgccattaacaaagtttgagagtaatatgaagtatttgagccaacaggaacatgttgtgtctagaaaatacttt |
28094456 |
T |
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| Q |
117 |
tatagagttgagaatactgttacgcctgttcctgataaccctgttttatgtgtgaaacctgtgacagaacgcattcatagatatgcaagattcttcatta |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28094455 |
tatagagttgagaatactgttacgcctgttcctgataaccctgttttatgcgtgaaacctgtgacagaacgcattcatagatatgcaagattcttcatta |
28094356 |
T |
|
| Q |
217 |
gtcagtgcttttctaaagggtgtggtgataagttgcagatattttctacggattttatagacttagattttgttgatgcatgtgttggactcacccatgc |
316 |
Q |
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| T |
28094355 |
gtcagtgcttttctaaagggtgtggtgataagttgcagatattttctacggattttatagacttagattttgttgatgcatgtgttggactcacccatgc |
28094256 |
T |
|
| Q |
317 |
aagggttgagggtaaagcatgaatcaattattatgtattgtgtttgattgtttgtgtatatataagcaacagtttgcgatgtggtgtcatatttgtgcat |
416 |
Q |
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| T |
28094255 |
aagggttgagggtaaagcatgaatcaattattatgtattgtgtttgattgtttgtgtatatataagcaacagtttgcgatgtggtgtcatatttgtgcat |
28094156 |
T |
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| Q |
417 |
atatatttattcttgcatgcatgcatttgttggaaatagaggttactagaataaaagggtcaattaaacattccatgaaaaaattagccacactaacact |
516 |
Q |
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| T |
28094155 |
atatatttattcttgcatgcatgcatttgttggaaatagaggttactagaataaaagggtcaattaaacattccatgaaaaaattagccacactaacact |
28094056 |
T |
|
| Q |
517 |
cttcatgcttaacagaaagcaaaataaaatgttgatagattattagacatctatcaaaatcctctttatgtaatattgtaatgcaacaataccacattt- |
615 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | || | |
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| T |
28094055 |
cttcatgcttaacagaaagcaaaataaaatgttgatagattattagacatctatcaaaatcctctttatgtaatattgtaatgcaacaaaataaaatgtt |
28093956 |
T |
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| Q |
616 |
--aagtttatattttgaatccccttcacatttgctccggttgaatgcgtatctatgatgaaatgtgacaaaagtgctttaaccaaatagacttgatggat |
713 |
Q |
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| T |
28093955 |
gatagattatattttgaatccccttcacatttgctccggttgaatgcgtatctatgatgaaatgtgacaaaagtgctttaaccaaatagacttgatggat |
28093856 |
T |
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| Q |
714 |
gttg |
717 |
Q |
| |
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|||| |
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| T |
28093855 |
gttg |
28093852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 61; Significance: 8e-26; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 108 - 340
Target Start/End: Original strand, 26156293 - 26156525
Alignment:
| Q |
108 |
aaatacttttatagagttgagaatactgttacgcctgttcctgataaccctgttttatgtgtgaaacctgtgacagaacgcattcatagatatgcaagat |
207 |
Q |
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||||| |||||||| || |||||||| ||||| || || | |||||||||||||| |||||||||||||| || |||||||||| ||||||| || |
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| T |
26156293 |
aaatatttttatagggtggagaatacggttactccagtggcggataaccctgttttgtgtgtgaaacctgtaacgagacgcattcatggatatgctaggc |
26156392 |
T |
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| Q |
208 |
tcttcattagtcagtgcttttctaaagggtgtggtgataagttgcagatattttctacggattttatagacttagattttgttgatgcatgtgttggact |
307 |
Q |
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|||| ||| |||||||||| |||| || | || |||| | | ||| | ||||| || |||||||| || |||||||||||||||||||||||||| |
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| T |
26156393 |
tctttattgctcagtgctttgctaagggatatgcggataggattcaggtcttttccaccgattttattgatgaggattttgttgatgcatgtgttggact |
26156492 |
T |
|
| Q |
308 |
cacccatgcaagggttgagggtaaagcatgaat |
340 |
Q |
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| T |
26156493 |
cactcatgcaagggttgaaggaaaagcctgaat |
26156525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 108 - 340
Target Start/End: Original strand, 26169591 - 26169823
Alignment:
| Q |
108 |
aaatacttttatagagttgagaatactgttacgcctgttcctgataaccctgttttatgtgtgaaacctgtgacagaacgcattcatagatatgcaagat |
207 |
Q |
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||||| |||||||| || |||||||| ||||| || || | |||||||||||||| |||||||||||||| || |||||||||| ||||||| || |
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| T |
26169591 |
aaatatttttatagggtggagaatacggttactccagtggcggataaccctgttttgtgtgtgaaacctgtaacgagacgcattcatggatatgctaggc |
26169690 |
T |
|
| Q |
208 |
tcttcattagtcagtgcttttctaaagggtgtggtgataagttgcagatattttctacggattttatagacttagattttgttgatgcatgtgttggact |
307 |
Q |
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|||| ||| |||||||||| |||| || | || |||| | | ||| | ||||| || |||||||| || |||||||||||||||||||||||||| |
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| T |
26169691 |
tctttattgctcagtgctttgctaagggatatgcggataggattcaggtcttttccaccgattttattgatgaggattttgttgatgcatgtgttggact |
26169790 |
T |
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| Q |
308 |
cacccatgcaagggttgagggtaaagcatgaat |
340 |
Q |
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||| |||||||||||||| || ||||| ||||| |
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| T |
26169791 |
cactcatgcaagggttgaaggaaaagcctgaat |
26169823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 283 - 334
Target Start/End: Complemental strand, 55164595 - 55164544
Alignment:
| Q |
283 |
attttgttgatgcatgtgttggactcacccatgcaagggttgagggtaaagc |
334 |
Q |
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| T |
55164595 |
attttgttgatgcatgtgttggactcactcatgcaagggttgaaggaaaagc |
55164544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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