View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5876_high_23 (Length: 402)
Name: NF5876_high_23
Description: NF5876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5876_high_23 |
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Alignment Details
Target: chr2 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 1 - 385
Target Start/End: Original strand, 44648240 - 44648624
Alignment:
| Q |
1 |
tcatcatggacatcaaattaaactccttcaatgaggtccacacatgaaagtgaaagcatagagtttagtttctattgagaagttcttctatcatctgcaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44648240 |
tcatcatggacatcaaattaaactccttcaatgaggtccacacatgaaagttaaagcatagagtttagtttctattgagaagttcttctatcatctgcaa |
44648339 |
T |
|
| Q |
101 |
agcaattttctgttcatcatccaaaccatttttacttaattcctctggctttgccttctctggcacagaagcacnnnnnnncctttctaactcaaccatc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
44648340 |
agcaattttctgttcatcatccaaaccatttttacttaattcctctggctttgccttctctggcacagaagcactttttttcctttctaactcaaccatc |
44648439 |
T |
|
| Q |
201 |
ataatccaatttgattccgaacgaggacctgcacctttctgccacactccaatgtgtgaattctctgcatcaagcctcagacaagtgagtgaaggtgaag |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44648440 |
ataatccaatttgattccgaacgaggacctgcacctttctgccacactccaatgtgtgaattctctgcatcaagcctcagacaagtgagtgaaggtgaag |
44648539 |
T |
|
| Q |
301 |
gaaacttgcaacacttccttaacttcgcactaagaactgcagaaaatgctttggaagaagttgaagaagatgaaatagaattggt |
385 |
Q |
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| T |
44648540 |
gaaacttgcaacacttccttaactttgcactaagaactgcagaaaatgctttggaagaagttgaagaagatgaaatagaattggt |
44648624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 192 - 313
Target Start/End: Original strand, 2428397 - 2428518
Alignment:
| Q |
192 |
tcaaccatcataatccaatttgattccgaacgaggacctgcacctttctgccacactccaatgtgtgaattctctgcatcaagcctcagacaagtgagtg |
291 |
Q |
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| T |
2428397 |
tcaaccatcatgatccagctcgagtccgaacgaggtcctgctcttttctgccacactccaaagtgtgaattctcagtgtcaagccttagacaagtgaggg |
2428496 |
T |
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| Q |
292 |
aaggtgaaggaaacttgcaaca |
313 |
Q |
| |
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|||||||||| |||||||||| |
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| T |
2428497 |
aaggtgaaggtgacttgcaaca |
2428518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 228 - 292
Target Start/End: Original strand, 2480354 - 2480418
Alignment:
| Q |
228 |
cctgcacctttctgccacactccaatgtgtgaattctctgcatcaagcctcagacaagtgagtga |
292 |
Q |
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||||| ||||| ||||| ||||| ||||| ||||| || ||||||||||||| |||||||||||| |
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| T |
2480354 |
cctgctcctttttgccagactcctatgtgagaattatcagcatcaagcctcaaacaagtgagtga |
2480418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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