View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5876_high_24 (Length: 399)
Name: NF5876_high_24
Description: NF5876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5876_high_24 |
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Alignment Details
Target: chr3 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 18 - 391
Target Start/End: Complemental strand, 49941863 - 49941490
Alignment:
| Q |
18 |
tattgttcaccaaacaatacttatattaaaagtgtcacatgactaatgagctttatattcattaggtaattttctatcataaagaaataatgcatatgaa |
117 |
Q |
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| T |
49941863 |
tattgttcaccaaacaatacttatattaaaagtgtcacatgactaatgagctttatattcattaggtaattttctatcataaagaaataatgcatatgaa |
49941764 |
T |
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| Q |
118 |
atattagaaaatctacatatgaagttgaacattctgtgttgattttccttcctttgtcaaaagaggttaagctgtaaataagcattttcaaagatgattt |
217 |
Q |
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| T |
49941763 |
atattagaaaatctacatatgaagttaaacattctatgttgattttccttcctttgtcaaaagaggttaagccgtaaataagcattttcaaagatgattt |
49941664 |
T |
|
| Q |
218 |
aaatagctttcaaggtgatcaaatagtttggtttttccagaacatatcagcaagtttgtgttttcgtgttcaaagaatatttttacacaatgcatgtggc |
317 |
Q |
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| T |
49941663 |
aaatagctttcaaggtgatcaaatagtttggtttttccagaacatatcagcaagtttgtgttttcgtgttcaaagaatatttttacacaatgcatgtggc |
49941564 |
T |
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| Q |
318 |
tggtttggcagcatccctctagaagcatcaggagattttggcattcaccctgagaaaggagaattaagtattat |
391 |
Q |
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| T |
49941563 |
tggtttggcagcatccctctagaagcatcaggagattttggcattcaccctgagaaaggagaattaaatattat |
49941490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 255 - 364
Target Start/End: Original strand, 1906838 - 1906947
Alignment:
| Q |
255 |
cagaacatatcagcaagtttgtgttttcgtgttcaaagaatatttttacacaatgcatgtggctggtttggcagcatccctctagaagcatcaggagatt |
354 |
Q |
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| T |
1906838 |
cagaacatatcaacgagtttatgttttcgcggtcaaagaatatttttacacaatgcaaatggccggtttggcagtgttcctctagaagcatcaggagact |
1906937 |
T |
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| Q |
355 |
ttggcattca |
364 |
Q |
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| T |
1906938 |
ttggcattca |
1906947 |
T |
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