View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5876_high_25 (Length: 382)
Name: NF5876_high_25
Description: NF5876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5876_high_25 |
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Alignment Details
Target: chr2 (Bit Score: 290; Significance: 1e-163; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 18 - 372
Target Start/End: Complemental strand, 9269059 - 9268703
Alignment:
| Q |
18 |
caaccacggcaaaaaccacttctcaaaacttacatgctcgtcctcgaagatgaaaatggtctcagaaacgaaatcatcgaaattacaattcttcgtccgc |
117 |
Q |
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| T |
9269059 |
caaccacggcaaaaaccacttctcaaaactcacatgctcgtcttcgaagatgaaaaaggtctcagaaacgaaatcatcgaaattacaattcttcgtccgc |
9268960 |
T |
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| Q |
118 |
atgtggaacagtaacaccttagtgattcgtgcttctagcgnnnnnnnn--gttgaatcccttctcgaacaaatttcattcaaaaccaaaattccgattga |
215 |
Q |
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| T |
9268959 |
atgtggaacagtaacaccttagtgattcgtgcttctagcgaaaaaaaaaagttgaatcccttctcgaacaaatttcattcaaaaccaaaattccgattga |
9268860 |
T |
|
| Q |
216 |
acatcaacgattaatatacgaaggaaaacagcttcagctagaacagagtcttcgcgaatgtggcatcgaaaacgatgcagatctccaattggttggacga |
315 |
Q |
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| T |
9268859 |
acatcaacgattaatatacgaagcaaaacagcttcagctagaatagagtcttcgcgaatgtggcatcgaaaacgatgcaaatctccaattggttggacga |
9268760 |
T |
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| Q |
316 |
ttgaggagtatagtttgtcctaaagcgtggaaagccaaacattatattgttcctttg |
372 |
Q |
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| T |
9268759 |
ttgaggagtatagtttgtcctaaagtgtggaaagccaaacattatattgtttctttg |
9268703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 18 - 372
Target Start/End: Complemental strand, 9259064 - 9258707
Alignment:
| Q |
18 |
caaccacggcaaaaaccacttctcaaaacttacatgctcgtcctcgaagatgaaaatggtctcagaaacgaaatcatcgaaattacaattcttcgtccgc |
117 |
Q |
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| T |
9259064 |
caaccaccgcaaaaaccactccccaaaactcacatcctcgtcttcgaagatgaaaaagatcacgaaaacgaaatcatcgaaattacaattcttcgtccgc |
9258965 |
T |
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| Q |
118 |
atg---tggaacagtaacaccttagtgattcgtgcttctagcgnnnnnnnngttgaatcccttctcgaacaaatttcattcaaaaccaaaattccgattg |
214 |
Q |
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| T |
9258964 |
atgatgtggaactgtaacaccttagtgattcgtgcttctagagaaaaaacagttgaatcgcttctcgaacaaatttcgtctaaaaccagaattccgattc |
9258865 |
T |
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| Q |
215 |
aacatcaacgattaatatacgaaggaaaacagcttcagctagaacagagtcttcgcgaatgtggcatcgaaaacgatgcagatctccaattggttggacg |
314 |
Q |
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| T |
9258864 |
aacatcaacgattaatttacgaaggaaaacagcttactctagaacagagtctctgcgaatgcggcatcgaaaacgatgcaaatcttcaattggttggtcg |
9258765 |
T |
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| Q |
315 |
attgaggagtatagtttgtcctaaagcgtggaaagccaaacattatattgttcctttg |
372 |
Q |
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| T |
9258764 |
cttgaggagtatagcgtgtcctaaagtgtggaaagccacacaatatattgtttctttg |
9258707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 176 - 329
Target Start/End: Complemental strand, 9250829 - 9250676
Alignment:
| Q |
176 |
ttctcgaacaaatttcattcaaaaccaaaattccgattgaacatcaacgattaatatacgaaggaaaacagcttcagctagaacagagtcttcgcgaatg |
275 |
Q |
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||||| |||||||||||| ||||||||||||||| |||||| |||||||||| || ||| | |||||||||||||||| | |||||||||| || |||| |
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| T |
9250829 |
ttctccaacaaatttcatccaaaaccaaaattcctattgaatatcaacgattgatctacaatggaaaacagcttcagcaacaacagagtctcagccaatg |
9250730 |
T |
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| Q |
276 |
tggcatcgaaaacgatgcagatctccaattggttggacgattgaggagtatagt |
329 |
Q |
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| T |
9250729 |
cggcatcgaaaacgacgccaatcttcaattggttggtcaattgaggagtatagt |
9250676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 176 - 328
Target Start/End: Complemental strand, 9238311 - 9238159
Alignment:
| Q |
176 |
ttctcgaacaaatttcattcaaaaccaaaattccgattgaacatcaacgattaatatacgaaggaaaacagcttcagctagaacagagtcttcgcgaatg |
275 |
Q |
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||||| |||||||||||| ||||||||||||||| |||||| |||||||||| || ||| | |||||||||||||||| | |||||||||| || |||| |
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| T |
9238311 |
ttctccaacaaatttcatccaaaaccaaaattcctattgaatatcaacgattgatctacaatggaaaacagcttcagcaacaacagagtctcagccaatg |
9238212 |
T |
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| Q |
276 |
tggcatcgaaaacgatgcagatctccaattggttggacgattgaggagtatag |
328 |
Q |
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| T |
9238211 |
cggcatcgaaaacgacgccaatcttcaattggttggtcaattgaggagtatag |
9238159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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