View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5876_high_33 (Length: 344)
Name: NF5876_high_33
Description: NF5876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5876_high_33 |
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Alignment Details
Target: chr6 (Bit Score: 103; Significance: 3e-51; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 110 - 216
Target Start/End: Complemental strand, 32994850 - 32994744
Alignment:
| Q |
110 |
gtgaaacattgctcataatcagattcatgagagtatttaggaaccaagaggtaccttaatttgtcactctttgatctctcaaggataggagctgatcatg |
209 |
Q |
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| T |
32994850 |
gtgaaacattgctcataatcagattcatgagagtattgaggaaccaagaggtaccttaatttgtcactctttgatctctcaaggataggagctgatcatg |
32994751 |
T |
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| Q |
210 |
aaaaaca |
216 |
Q |
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||||||| |
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| T |
32994750 |
aaaaaca |
32994744 |
T |
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Target: chr6; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 239 - 328
Target Start/End: Complemental strand, 32994751 - 32994662
Alignment:
| Q |
239 |
gaaaaacagcattgaattagtaacattacattgcaattgatttgcnnnnnnntaaatgttgtatgcatcaaaataatcaaaggtgacatg |
328 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
32994751 |
gaaaaacagcattgaattagtaacattacattgcaattgatttgcaaaaaaataaatgttgtatgcatcaaaataatcaaaggtgacatg |
32994662 |
T |
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