View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5876_high_34 (Length: 342)
Name: NF5876_high_34
Description: NF5876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5876_high_34 |
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Alignment Details
Target: chr2 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 13 - 327
Target Start/End: Original strand, 36609963 - 36610277
Alignment:
| Q |
13 |
aatatgaagattgaaaaccctaaactcatcataactctgcttcggctcttctctccaaaaggtgttagcaattaggatgcatcaatagattcaatactaa |
112 |
Q |
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| T |
36609963 |
aatatgaagattgaaaaccctaaactcatcataactctgcttcggctcttctctccaaaaggtgttagcaattaggatgcatcaatagattcaatactaa |
36610062 |
T |
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| Q |
113 |
ggaaaattatcagaacaaatttagcttgaacccttggattcatagaagaagcaacaagcttatnnnnnnntataaaagaagaaagcaacaagttccttat |
212 |
Q |
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| T |
36610063 |
ggaaaattatcagaacaaatttagcttgaacccttggattcatagaagaagcaacaagcttataaaaaaatataaaagaagaaagcaacaagttccttat |
36610162 |
T |
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| Q |
213 |
ttcatacgtaccgaggaagtcaaatcatcagcttttagtgtcttagcaagcccaaaatcccctatataaatatcaggaaattacaaacaaattaaggatg |
312 |
Q |
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| T |
36610163 |
ttcatacgtaccgaggaagtcaaatcatcagcttttagtgtcttagcaagcccaaaatcccctatataaatatcaggaaattacaaacaaattaaggatg |
36610262 |
T |
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| Q |
313 |
aagaattaatcaatc |
327 |
Q |
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| T |
36610263 |
aagaattaatcaatc |
36610277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 187 - 279
Target Start/End: Complemental strand, 18642662 - 18642570
Alignment:
| Q |
187 |
aaagaagaaagcaacaagttccttatttcatacgtaccgaggaagtcaaatcatcagcttttagtgtcttagcaagcccaaaatcccctatat |
279 |
Q |
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||||||||||| ||||| || |||||||||| |||||| |||| ||||||||| |||||||||||||||||| |||||||| ||||||| |
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| T |
18642662 |
aaagaagaaagaaacaatttatgtatttcatacataccgaagaagccaaatcatcttgttttagtgtcttagcaagtccaaaatcacctatat |
18642570 |
T |
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