View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5876_high_40 (Length: 312)
Name: NF5876_high_40
Description: NF5876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5876_high_40 |
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Alignment Details
Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 13 - 294
Target Start/End: Complemental strand, 812286 - 812011
Alignment:
| Q |
13 |
tattctagatagaaaaatgtttgatcaccttcaaacaataagaaagagagagtgatcgacagatttatttatttaatatgttggtaatgaccaaatcata |
112 |
Q |
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| T |
812286 |
tattctagatagaaaaatgtttgatcaccttcaaacaataagaaagagagagtgatcgacatatttatttatttaatatgttggtaatgaccaaatcata |
812187 |
T |
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| Q |
113 |
catttgtgctttaatgaatggcttcttatattacag-ttttaataactaactttttggcatgaaattggatcctatcctatacttgctatgaaagacaac |
211 |
Q |
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| T |
812186 |
catttgtgctttaatgaatggcttcttatattacagtttttaataactaactttttggcatgaaattgg-----atcctatacttgctatgaaagacaac |
812092 |
T |
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| Q |
212 |
ttgaagtcctattttattttcttatacataagtgttcactcctcatcaactttgtatttctgtaaggctagtttgttatattc |
294 |
Q |
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| T |
812091 |
ttgaagtcctattttattttcttatacgtaagtgttcactcctcatcaactttgtatttc--taaggctagtttgctatattc |
812011 |
T |
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